mRNA_H-elongata_contig124780.1867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124780.1867.1
Unique NamemRNA_H-elongata_contig124780.1867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig124780.1867.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 5.610e-8
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:  184 YQRTLVRLMGAREKGGQAWVGSMGLGPEDTMEPALFRESLARCLGSHDNAESLG 345
            YQR  +R  GAR KG  AW    G+ P + + PALFRE LAR LGSHD   + G
Sbjct: 1765 YQRAYMRFAGARGKGAMAWATCQGIEPWERVAPALFREILARNLGSHDRDVAFG 1818
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124780.1867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN5.610e-851.85Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124780contigH-elongata_contig124780:48..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.7473695-CDS-H-elongata_contig124780:47..3951622929736.7473695-CDS-H-elongata_contig124780:47..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124780 48..395 +
1691679138.2696738-CDS-H-elongata_contig124780:47..3951691679138.2696738-CDS-H-elongata_contig124780:47..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124780 48..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124780.1867.1prot_H-elongata_contig124780.1867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124780 48..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124780.1867.1

>prot_H-elongata_contig124780.1867.1 ID=prot_H-elongata_contig124780.1867.1|Name=mRNA_H-elongata_contig124780.1867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
VNGEVGTAHTLGTVQKAQSALTRVQAKVAGERLMARAHKMAKSRRSFGAA
DGDATRAEVAPYQRTLVRLMGAREKGGQAWVGSMGLGPEDTMEPALFRES
LARCLGSHDNAESLGG
back to top

mRNA from alignment at H-elongata_contig124780:48..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124780.1867.1 ID=mRNA_H-elongata_contig124780.1867.1|Name=mRNA_H-elongata_contig124780.1867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig124780:48..395+ (Himanthalia elongata Himel1 dioecious)
GTTAATGGCGAGGTGGGAACGGCGCACACTCTTGGTACAGTGCAAAAGGC
CCAGTCTGCGCTTACACGCGTGCAAGCGAAGGTGGCGGGTGAGCGCCTCA
TGGCCCGGGCGCACAAGATGGCCAAAAGCCGCCGCAGCTTCGGTGCTGCC
GACGGCGATGCCACCCGGGCTGAGGTTGCCCCCTACCAGCGGACCTTGGT
CCGACTGATGGGGGCCCGCGAGAAAGGGGGGCAAGCTTGGGTTGGCAGCA
TGGGCCTAGGACCAGAGGACACGATGGAGCCCGCCCTCTTCCGGGAGAGT
CTTGCCCGGTGCCTGGGCTCGCACGACAACGCGGAATCGCTAGGTGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig124780:48..395+

>mRNA_H-elongata_contig124780.1867.1 ID=mRNA_H-elongata_contig124780.1867.1|Name=mRNA_H-elongata_contig124780.1867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig124780:48..395+ (Himanthalia elongata Himel1 dioecious)
GTTAATGGCGAGGTGGGAACGGCGCACACTCTTGGTACAGTGCAAAAGGC
CCAGTCTGCGCTTACACGCGTGCAAGCGAAGGTGGCGGGTGAGCGCCTCA
TGGCCCGGGCGCACAAGATGGCCAAAAGCCGCCGCAGCTTCGGTGCTGCC
GACGGCGATGCCACCCGGGCTGAGGTTGCCCCCTACCAGCGGACCTTGGT
CCGACTGATGGGGGCCCGCGAGAAAGGGGGGCAAGCTTGGGTTGGCAGCA
TGGGCCTAGGACCAGAGGACACGATGGAGCCCGCCCTCTTCCGGGAGAGT
CTTGCCCGGTGCCTGGGCTCGCACGACAACGCGGAATCGCTAGGTGGGGT
TAATGGCGAGGTGGGAACGGCGCACACTCTTGGTACAGTGCAAAAGGCCC
AGTCTGCGCTTACACGCGTGCAAGCGAAGGTGGCGGGTGAGCGCCTCATG
GCCCGGGCGCACAAGATGGCCAAAAGCCGCCGCAGCTTCGGTGCTGCCGA
CGGCGATGCCACCCGGGCTGAGGTTGCCCCCTACCAGCGGACCTTGGTCC
GACTGATGGGGGCCCGCGAGAAAGGGGGGCAAGCTTGGGTTGGCAGCATG
GGCCTAGGACCAGAGGACACGATGGAGCCCGCCCTCTTCCGGGAGAGTCT
TGCCCGGTGCCTGGGCTCGCACGACAACGCGGAATCGCTAGGTGGG
back to top