mRNA_H-elongata_contig124662.1860.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124662.1860.1
Unique NamemRNA_H-elongata_contig124662.1860.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124662.1860.1 vs. uniprot
Match: D8LQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ14_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.590e-51
Identity = 78/108 (72.22%), Postives = 98/108 (90.74%), Query Frame = 1 
Query:    1 QVFSSVAYSTGGHDFPLLGVSAMAMGRVRIVAIDLQPLFTGEAYAVKYAEASSKMKAIRERYPQIGQELQKDYYKGSPFFSDNMLYARWGLEDEASGFMENVVMPAFQ 324
            QV+S+VAYS  GHDFPLLG+SAMAMG VR++A+DLQPLF GE YA KYA+A++K+KAIR +YPQ+G+EL+KDYYKGSPFFSD+M+YARWG ++EA GFM+ VVMPAF+
Sbjct:  188 QVYSTVAYSAPGHDFPLLGLSAMAMGSVRVLALDLQPLFPGEDYAAKYADANAKLKAIRNKYPQLGEELRKDYYKGSPFFSDSMMYARWGPKEEADGFMDKVVMPAFR 295
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BLAST of mRNA_H-elongata_contig124662.1860.1 vs. uniprot
Match: K9PVB2_9CYAN (15,16-dihydrobiliverdin:ferredoxin oxidoreductase n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=K9PVB2_9CYAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.220e-15
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    1 QVFSSVAYSTGGHDFPLLGVSAMAMGRVRI-VAIDLQPLFTGEAYAVKYAEASSKMKAIRERYPQIGQELQKDYYKGSPFFSDNMLYARWGLEDEASGFMENVVMPAFQ 324
            Q+F+SV Y + G+D PLLG+  +A G+ +I V +D QPLF  E Y  KY E    +KAIR+RY ++ Q+L   +Y  + +FS  +L+A+   +      + N ++PAF+
Sbjct:   67 QIFNSVLYPSYGYDMPLLGIDFLAFGQKKILVVLDFQPLFRDEGYMEKYIEP---VKAIRDRYDELAQDLPMRFYDAAQYFSPYLLFAKTDADT-----VVNSLLPAFK 167
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BLAST of mRNA_H-elongata_contig124662.1860.1 vs. uniprot
Match: A0A845XVK2_9CYAN (15,16-dihydrobiliverdin:ferredoxin oxidoreductase (Fragment) n=1 Tax=Moorena sp. SIO3B2 TaxID=2607827 RepID=A0A845XVK2_9CYAN)

HSP 1 Score: 76.6 bits (187), Expect = 4.320e-15
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 QVFSSVAYSTGGHDFPLLGVSAMAMGRVRI-VAIDLQPLFTGEAYAVKYAEASSKMKAIRERYPQIGQELQKDYYKGSPFFSDNMLYAR 264
            QVF+SV Y +  +D PLLG+  +A G+ +I V +D QPLF  EAY  KY E    M+AIR+RY  + Q L+  +Y  + +FS  +L+A+
Sbjct:   67 QVFNSVIYPSHCYDLPLLGIDFLAFGKKKILVVLDFQPLFRDEAYQEKYIEP---MRAIRDRYQDLAQNLEMKFYDANQYFSKYLLFAK 152
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BLAST of mRNA_H-elongata_contig124662.1860.1 vs. uniprot
Match: I4IE70_9CHRO (15,16-dihydrobiliverdin:ferredoxin oxidoreductase n=8 Tax=Microcystaceae TaxID=1890449 RepID=I4IE70_9CHRO)

HSP 1 Score: 77.0 bits (188), Expect = 8.140e-15
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 QVFSSVAYSTGGHDFPLLGVSAMAMGRVRI-VAIDLQPLFTGEAYAVKYAEASSKMKAIRERYPQIGQELQKDYYKGSPFFSDNMLYARWGLE 276
            Q+F+SV Y +  +D PLLG+  +A G+ +I V +D QPLF  + Y  KY E    M++IR++YP + Q+L   YY  + +FS  +L+A+   E
Sbjct:   78 QIFNSVIYPSYNYDLPLLGIDFLAFGKKKILVVLDFQPLFRDQDYLTKYIEP---MRSIRDKYPDLAQDLPMKYYDANQYFSPYLLFAKTDAE 167
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BLAST of mRNA_H-elongata_contig124662.1860.1 vs. uniprot
Match: A0A6P0SIH7_9CYAN (15,16-dihydrobiliverdin:ferredoxin oxidoreductase n=27 Tax=Moorena TaxID=1155738 RepID=A0A6P0SIH7_9CYAN)

HSP 1 Score: 75.5 bits (184), Expect = 2.810e-14
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 QVFSSVAYSTGGHDFPLLGVSAMAMGRVRI-VAIDLQPLFTGEAYAVKYAEASSKMKAIRERYPQIGQELQKDYYKGSPFFSDNMLYAR 264
            QVF+SV Y +  +D PLLG+  ++ G+ +I V +D QPLF  EAY  KY E    M+AIR+RY  + Q L+  +Y  + +FS  +L+A+
Sbjct:   67 QVFNSVIYPSHCYDLPLLGIDFLSFGKKKILVVLDFQPLFRDEAYQEKYIEP---MRAIRDRYQDLAQNLEMKFYDANQYFSKYLLFAK 152
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BLAST of mRNA_H-elongata_contig124662.1860.1 vs. uniprot
Match: A0A8K2A7H3_9CYAN (15,16-dihydrobiliverdin:ferredoxin oxidoreductase n=1 Tax=Petrachloros mirabilis ULC683 TaxID=2781853 RepID=A0A8K2A7H3_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 4.190e-11
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 QVFSSVAYSTGGHDFPLLGVSAMAMGRVR-IVAIDLQPLFTGEAYAVKYAEASSKMKAIRERYPQIGQELQKDYYKGSPFFSDNMLYAR 264
            Q+ +SV Y    ++ PLLG+  ++ G+V+ ++ +D QPLF  E Y  KY      +K +R+RYP + Q L+  +Y  + +FS  +L+A+
Sbjct:   67 QILNSVIYPHPAYELPLLGIDFLSFGQVKNLIVMDFQPLFQDEDYLRKYIYP---LKQLRDRYPDLAQNLEMKFYDANQYFSQYLLFAK 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124662.1860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQ14_ECTSI2.590e-5172.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K9PVB2_9CYAN1.220e-1538.5315,16-dihydrobiliverdin:ferredoxin oxidoreductase ... [more]
A0A845XVK2_9CYAN4.320e-1543.8215,16-dihydrobiliverdin:ferredoxin oxidoreductase ... [more]
I4IE70_9CHRO8.140e-1539.7815,16-dihydrobiliverdin:ferredoxin oxidoreductase ... [more]
A0A6P0SIH7_9CYAN2.810e-1442.7015,16-dihydrobiliverdin:ferredoxin oxidoreductase ... [more]
A0A8K2A7H3_9CYAN4.190e-1134.8315,16-dihydrobiliverdin:ferredoxin oxidoreductase ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124662contigH-elongata_contig124662:360..908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.5
Seed ortholog evalue5.3e-13
Seed eggNOG ortholog111781.Lepto7376_0653
Preferred namepebA
KEGG rclassRC01474
KEGG koko:K05369
KEGG ReactionR05818
KEGG Pathwayko00860,ko01110,map00860,map01110
EggNOG free text desc.Belongs to the HY2 family
EggNOG OGs1G1W0@1117,1H7ZC@1150,28II3@1,2Z8J9@2
EC1.3.7.2
COG Functional cat.C
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFerredoxin-dependent bilin reductase
Ec32 orthologEc-15_001330.1
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.9584656-CDS-H-elongata_contig124662:359..4821622929735.9584656-CDS-H-elongata_contig124662:359..482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124662 360..482 -
1691679137.9269013-CDS-H-elongata_contig124662:359..4821691679137.9269013-CDS-H-elongata_contig124662:359..482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124662 360..482 -
1622929735.9912484-CDS-H-elongata_contig124662:707..9081622929735.9912484-CDS-H-elongata_contig124662:707..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124662 708..908 -
1691679137.9366868-CDS-H-elongata_contig124662:707..9081691679137.9366868-CDS-H-elongata_contig124662:707..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124662 708..908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124662.1860.1prot_H-elongata_contig124662.1860.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124662 360..908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124662.1860.1

>prot_H-elongata_contig124662.1860.1 ID=prot_H-elongata_contig124662.1860.1|Name=mRNA_H-elongata_contig124662.1860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
QVFSSVAYSTGGHDFPLLGVSAMAMGRVRIVAIDLQPLFTGEAYAVKYAE
ASSKMKAIRERYPQIGQELQKDYYKGSPFFSDNMLYARWGLEDEASGFME
NVVMPAFQ
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mRNA from alignment at H-elongata_contig124662:360..908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124662.1860.1 ID=mRNA_H-elongata_contig124662.1860.1|Name=mRNA_H-elongata_contig124662.1860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at H-elongata_contig124662:360..908- (Himanthalia elongata Himel1 dioecious)
CAGGTGTTCAGCTCGGTAGCATACAGCACGGGGGGCCACGACTTCCCACT
GCTTGGCGTCTCCGCGATGGCGATGGGGCGCGTGAGGATAGTCGCTATTG
ATCTCCAGCCGCTGTTTACCGGGGAAGCCTACGCCGTCAAGTATGCCGAG
GCGTCCTCGAAGATGAAAGCGATCCGCGAAAGATACCCGCAGATAGGCCA
GGTGCGTCTTCTCGTGTGTGCGTGTTGTTTTTTTTAAGGTCATTGAACTC
GACCCCTTTTGTTGCCAACGACACGATTCAGCTGCTGCTGTGCTTCGCGG
CCGTGGCTAGATTTTACTTGCAGTAGTTAAAAAGCAGCGTTTTGGTGAAA
CCGATGACACCTCACTATTGTTGATCCCACCACACACACACGTACATCAG
TCGCTTTTTCCCTCGCGAACCCTCAGGAGCTGCAAAAAGACTACTACAAA
GGGTCACCGTTTTTCTCGGACAACATGCTCTACGCGCGATGGGGACTCGA
GGACGAGGCATCGGGGTTCATGGAAAACGTCGTAATGCCTGCCTTCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig124662:360..908-

>mRNA_H-elongata_contig124662.1860.1 ID=mRNA_H-elongata_contig124662.1860.1|Name=mRNA_H-elongata_contig124662.1860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig124662:360..908- (Himanthalia elongata Himel1 dioecious)
CAGGTGTTCAGCTCGGTAGCATACAGCACGGGGGGCCACGACTTCCCACT
GCTTGGCGTCTCCGCGATGGCGATGGGGCGCGTGAGGATAGTCGCTATTG
ATCTCCAGCCGCTGTTTACCGGGGAAGCCTACGCCGTCAAGTATGCCGAG
GCGTCCTCGAAGATGAAAGCGATCCGCGAAAGATACCCGCAGATAGGCCA
GCAGGTGTTCAGCTCGGTAGCATACAGCACGGGGGGCCACGACTTCCCAC
TGCTTGGCGTCTCCGCGATGGCGATGGGGCGCGTGAGGATAGTCGCTATT
GATCTCCAGCCGCTGTTTACCGGGGAAGCCTACGCCGTCAAGTATGCCGA
GGCGTCCTCGAAGATGAAAGCGATCCGCGAAAGATACCCGCAGATAGGCC
AGGAGCTGCAAAAAGACTACTACAAAGGGTCACCGTTTTTCTCGGACAAC
ATGCTCTACGCGCGATGGGGACTCGAGGACGAGGCATCGGGGTTCATGGA
AAACGTCGTAATGCCTGCCTTCCAAGAGCTGCAAAAAGACTACTACAAAG
GGTCACCGTTTTTCTCGGACAACATGCTCTACGCGCGATGGGGACTCGAG
GACGAGGCATCGGGGTTCATGGAAAACGTCGTAATGCCTGCCTTCCAA
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