mRNA_H-elongata_contig124529.1844.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124529.1844.1
Unique NamemRNA_H-elongata_contig124529.1844.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124529.1844.1 vs. uniprot
Match: A0A6H5K9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.840e-19
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 MTPFSFPFILKASHLVQMRKDIAHNMGKDTFEEAFYSICSGPPQSYSQFDIMFNYLWYNKRDEYFWNI 204
            MTP  FP I+K+ H   MR+DI  N+G  TF EAF+ ICS    SYSQF+IM  YLWYNK DEY W+I
Sbjct:   61 MTPMIFPVIVKSDHFDDMRRDITRNLGAATFAEAFHMICSEGANSYSQFEIMVTYLWYNKHDEYSWHI 128
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BLAST of mRNA_H-elongata_contig124529.1844.1 vs. uniprot
Match: D7FRJ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ7_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.010e-18
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 MTPFSFPFILKASHLVQMRKDIAHNMGKDTFEEAFYSICSGPPQSYSQFDIMFNYLWYNKRDEYFWNI 204
            MT  +FP I+K+ H  QMR+ IA N+G +TFEEAF  ICS   +SYSQF+IM NYLWY   DEY W+I
Sbjct:  216 MTRIAFPIIIKSEHFSQMRQVIAENLGAETFEEAFKVICSAGKESYSQFEIMINYLWYYHHDEYSWHI 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124529.1844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9S0_9PHAE1.840e-1958.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRJ7_ECTSI2.010e-1858.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124529contigH-elongata_contig124529:1374..1577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.3478308-CDS-H-elongata_contig124529:1373..15771622929734.3478308-CDS-H-elongata_contig124529:1373..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124529 1374..1577 -
1691679137.345285-CDS-H-elongata_contig124529:1373..15771691679137.345285-CDS-H-elongata_contig124529:1373..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124529 1374..1577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124529.1844.1prot_H-elongata_contig124529.1844.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124529 1374..1577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124529.1844.1

>prot_H-elongata_contig124529.1844.1 ID=prot_H-elongata_contig124529.1844.1|Name=mRNA_H-elongata_contig124529.1844.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MTPFSFPFILKASHLVQMRKDIAHNMGKDTFEEAFYSICSGPPQSYSQFD
IMFNYLWYNKRDEYFWNI
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mRNA from alignment at H-elongata_contig124529:1374..1577-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124529.1844.1 ID=mRNA_H-elongata_contig124529.1844.1|Name=mRNA_H-elongata_contig124529.1844.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig124529:1374..1577- (Himanthalia elongata Himel1 dioecious)
ATGACTCCCTTCTCGTTTCCCTTCATATTAAAAGCGTCGCATTTGGTTCA
AATGCGCAAAGATATCGCTCACAACATGGGTAAAGATACATTTGAAGAGG
CGTTCTACAGCATCTGTAGTGGCCCACCACAGAGTTATTCTCAGTTCGAC
ATAATGTTCAACTACCTGTGGTATAATAAGCGCGATGAATACTTCTGGAA
TATC
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Coding sequence (CDS) from alignment at H-elongata_contig124529:1374..1577-

>mRNA_H-elongata_contig124529.1844.1 ID=mRNA_H-elongata_contig124529.1844.1|Name=mRNA_H-elongata_contig124529.1844.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig124529:1374..1577- (Himanthalia elongata Himel1 dioecious)
ATGACTCCCTTCTCGTTTCCCTTCATATTAAAAGCGTCGCATTTGGTTCA
AATGCGCAAAGATATCGCTCACAACATGGGTAAAGATACATTTGAAGAGG
CGTTCTACAGCATCTGTAGTGGCCCACCACAGAGTTATTCTCAGTTCGAC
ATAATGTTCAACTACCTGTGGTATAATAAGCGCGATGAATACTTCTGGAA
TATCATGACTCCCTTCTCGTTTCCCTTCATATTAAAAGCGTCGCATTTGG
TTCAAATGCGCAAAGATATCGCTCACAACATGGGTAAAGATACATTTGAA
GAGGCGTTCTACAGCATCTGTAGTGGCCCACCACAGAGTTATTCTCAGTT
CGACATAATGTTCAACTACCTGTGGTATAATAAGCGCGATGAATACTTCT
GGAATATC
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