mRNA_H-elongata_contig1245.1839.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A6H5KC33_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC33_9PHAE) HSP 1 Score: 129 bits (325), Expect = 4.940e-30 Identity = 67/148 (45.27%), Postives = 90/148 (60.81%), Query Frame = 3
Query: 6 LSTIGGVGTIETTATDFYDSSNAINFHREVWG-DTIHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFP---------KDGPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKIIIPGER 419
++T + I + A D+YDS NA NF+R+VWG + IH+G Y +G+D L+G R+ +A L TE LL + FP + PP SECTMMDMGS YG AR A K GC VVCI +A N +N + AGL +K+I+PGE+
Sbjct: 6 VATSDKIDEISSVAKDYYDSDNAFNFYRQVWGGEHIHVGLYTRFEGEDVELKGVDRISKASSLCTEELLSRCFPAVATVTSNGEAAPPASECTMMDMGSGYGGTARAAAKKLGCKVVCINVASRENEINTAITKDAGLQDKVIVPGEK 153
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A6H5KZ03_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ03_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.180e-27 Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 3
Query: 87 REVWGDTIHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFPKDGPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKIIIPGER 419
++ WG+ IHIGRYDLL + + + R+ RA L+T LL K FP + T+MDMGS++G+ AR A K +GC VVCI+++ N VNAK SAAAGLS+KIIIPGER
Sbjct: 3 QQAWGEDIHIGRYDLLSMDELKMGPRERIKRATALSTRGLLGKVFPPSPGGETTMTVMDMGSAHGSTARTAAKEHGCNVVCIDISRGFNTVNAKLSAAAGLSDKIIIPGER 113
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: D8LE22_ECTSI (Probable glycine-sarcosine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE22_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.480e-25 Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 3
Query: 90 EVWGDTIHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFPKD-GPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKIIIPGER 419
+ WG+ IHIGRYDLL + + + R+ RA L+T LL K FP G + T+MDMGS++G+ AR A K +GC VVCI+++ N VNAK SAAAGLS+KIIIPGER
Sbjct: 2 QAWGEDIHIGRYDLLSTDELKMGPRERIKRATALSTRGLLGKVFPPSPGGETTIMTVMDMGSAHGSTARTAAKEHGCNVVCIDISRGFNAVNAKLSAAAGLSDKIIIPGER 112
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A835YZA4_9STRA (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA4_9STRA) HSP 1 Score: 101 bits (251), Expect = 3.170e-21 Identity = 56/130 (43.08%), Postives = 81/130 (62.31%), Query Frame = 3
Query: 33 IETTATDFYDSSNAINFHREVWGDT-IHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFPKDGPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKIIIPGER 419
I A +YDS +A NF+++VWG + IH+G YD + D+ ++ R+ A EL+ + L A P D S +MDMGS+YG AR K+YGCTV CI+++ N VN +AA GL++K++IPGER
Sbjct: 13 INDVAQQYYDSEDAFNFYKQVWGGSFIHVGLYDDPQVTDS-MDPMERIKLASELSAKRLFATAEPLD----SSSKVMDMGSAYGGNARLCAKTYGCTVTCIDISCKENEVNRSTTAAEGLADKVLIPGER 137
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A6T8NTF3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NTF3_HEMAN) HSP 1 Score: 87.8 bits (216), Expect = 3.380e-16 Identity = 48/132 (36.36%), Postives = 76/132 (57.58%), Query Frame = 3
Query: 42 TATDFYDSSNAINFHREVWG-DTIHIGRYDLLKGKDANLEGKARMHRAQ-ELATEILLKKAFPKDGPPPSECT-----MMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKIIIPGE 416
TA ++YDS +A F++ VWG + IH+G YD+++ K +E +A L+TE L + PS+ + DMG++YG AR+ YGC V+C+E++ N N K++A AGL +K++IP E
Sbjct: 33 TAQNYYDSDDAFIFYKHVWGGEAIHVGLYDVVQRKGEGIEADIEWSKASARLSTEQLFTQV-------PSQTLKEGMMVCDMGAAYGEAARHCASKYGCKVLCVEVSKKENEFNRKKTAEAGLQDKVLIPKE 157
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A120GC23_9SPHN (Methyltransferase n=1 Tax=Erythrobacter sp. AP23 TaxID=499656 RepID=A0A120GC23_9SPHN) HSP 1 Score: 68.6 bits (166), Expect = 1.250e-9 Identity = 43/122 (35.25%), Postives = 63/122 (51.64%), Query Frame = 3
Query: 45 ATDFYDSSNAINFHREVWG-DTIHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFPKDGPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKIII 407
A D+YDS +A +F+R++WG + IH+G Y E + + A E + +K P DG ++D+GS YG AR YG V CI L+ N N + + AAGLS++I I
Sbjct: 13 ARDYYDSPDADDFYRQIWGGEDIHVGLY----------ETTSDIRTASRKTIERIAQKLGPLDGK-----HIVDLGSGYGGAARVIASEYGARVTCINLSTKENARNRELTEAAGLSDRISI 119
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A1Z9SRI7_9PROT (SAM-dependent methyltransferase n=2 Tax=Rhodospirillaceae bacterium TMED256 TaxID=1986865 RepID=A0A1Z9SRI7_9PROT) HSP 1 Score: 64.3 bits (155), Expect = 3.850e-8 Identity = 37/120 (30.83%), Postives = 65/120 (54.17%), Query Frame = 3
Query: 45 ATDFYDSSNAINFHREVWG-DTIHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFPKDGPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKI 401
A ++YDSS A+ F++ VWG + IHIG Y +D ++ G A +A +L P + ++D+G+ +G AR ++GC V C+ ++ A N +N + + +GL++KI
Sbjct: 11 AEEYYDSSPAVAFYKNVWGGEDIHIGLYH---SEDEDI-GAASRRTVVNMAQRLL---------PLGQDSNVIDLGAGFGGTARYLASNFGCNVTCVNVSEAQNTLNREMNXESGLADKI 117
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A2S6TBI5_9PROT (Sarcosine/dimethylglycine N-methyltransferase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin2 TaxID=2013075 RepID=A0A2S6TBI5_9PROT) HSP 1 Score: 60.5 bits (145), Expect = 7.660e-7 Identity = 38/124 (30.65%), Postives = 65/124 (52.42%), Query Frame = 3
Query: 33 IETTATDFYDSSNAINFHREVWG-DTIHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFPKDGPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKI 401
+ + A ++YDSS AI F+R VWG + IHIG Y + +D ++ G+A +A + P ++D+G+ +G AR ++ C V C+ ++ N +N + +A AGLS+ I
Sbjct: 7 VVSIAEEYYDSSPAIEFYRNVWGGEDIHIGLY---RTEDEDI-GEASRRTVATMAQRL---------SPLVPTSHVIDLGAGFGGSARYLASNFACRVTCVNVSDEQNALNRQMNADAGLSDLI 117
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A2E5PG11_9PROT (SAM-dependent methyltransferase (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PG11_9PROT) HSP 1 Score: 58.2 bits (139), Expect = 4.040e-6 Identity = 38/122 (31.15%), Postives = 64/122 (52.46%), Query Frame = 3
Query: 39 TTATDFYDSSNAINFHREVWG-DTIHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFPKDGPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKI 401
T A ++YDS+ A+ F+R VWG + IHIG Y + D ++ G+A T I + + GP + ++D+G+ +G AR ++GC V C+ ++ N +N K + A L+ I
Sbjct: 9 TKAEEYYDSTPAVEFYRNVWGGEDIHIGLY---RADDEDI-GEASKR------TIINMAQRLSPLGP---DTKVIDLGAGFGGTARFLASNFGCHVTCVNVSERQNSINRKLNKDANLTNCI 117
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Match: A0A352GNW4_9PROT (SAM-dependent methyltransferase (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A352GNW4_9PROT) HSP 1 Score: 55.8 bits (133), Expect = 1.050e-5 Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query: 45 ATDFYDSSNAINFHREVWG-DTIHIGRYDLLKGKDANLEGKARMHRAQELATEILLKKAFPKDGPPPSECTMMDMGSSYGTLARNAVKSYGCTVVCIELAPASNMVNAKRSAAAGLSEKI 401
A ++YDSS A F++ VWG + IHIG Y+ D ++ +A + +A +I P G + ++D+G+ YG AR+ +YGC V C+ L+ N +N ++A L I
Sbjct: 11 AEEYYDSSEADAFYKNVWGGEDIHIGIYN---APDEDI-AQASRRTVETMALQI------PGLG---RKTRILDLGAGYGGSARHLAGTYGCRVTCLNLSETQNDLNRDKNAETDLDALI 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1245.1839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1245.1839.1 >prot_H-elongata_contig1245.1839.1 ID=prot_H-elongata_contig1245.1839.1|Name=mRNA_H-elongata_contig1245.1839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp MHRAQELATEILLKKAFPKDGPPPSECTMMDMGSSYGTLARNAVKSYGCTback to top mRNA from alignment at H-elongata_contig1245:792..2619+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1245.1839.1 ID=mRNA_H-elongata_contig1245.1839.1|Name=mRNA_H-elongata_contig1245.1839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1828bp|location=Sequence derived from alignment at H-elongata_contig1245:792..2619+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1245:792..2619+ >mRNA_H-elongata_contig1245.1839.1 ID=mRNA_H-elongata_contig1245.1839.1|Name=mRNA_H-elongata_contig1245.1839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig1245:792..2619+ (Himanthalia elongata Himel1 dioecious)back to top |