mRNA_H-elongata_contig124475.1837.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S2AR06_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AR06_9STRA) HSP 1 Score: 177 bits (449), Expect = 1.390e-50 Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 1
Query: 1 SGLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
SG ++ C+NGGIC+ KDDC C+ SVLW+ Y ++ R +TGWTGTDCS+P+C+QGFFDPFCTDL QAPGGE GC+RC+NGG C+APD C CAEGW GYDC+TP+CE+
Sbjct: 223 SGAITGCENGGICTWKDDCFCIQTLSVLWRAYPESPRGITGWTGTDCSLPMCIQGFFDPFCTDLDQAPGGE-----------GCYRCANGGYCTAPDTCTCAEGWTGYDCKTPVCEM 328
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: D8LSI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI8_ECTSI) HSP 1 Score: 179 bits (453), Expect = 1.890e-49 Identity = 83/151 (54.97%), Postives = 91/151 (60.26%), Query Frame = 1
Query: 19 CQNGGICSAKDDCTC----------------------------------------VTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
C NGG C A D C+C VTADS+LWQVYE+ANRD+TGWTGTDCSMP+C QGFFDPFCTDLPQAPGGE GCFRC NGGVC+APDHC CA+GW GYDCRTP+CEV
Sbjct: 1845 CHNGGSCLAPDTCSCPDGWDGYDCNTPLCRHLQPSGXXXXXXXXXXXXXXXXXXXVTADSILWQVYEEANRDITGWTGTDCSMPMCAQGFFDPFCTDLPQAPGGE-----------GCFRCPNGGVCTAPDHCSCADGWTGYDCRTPVCEV 1984
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S3UTA0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA0_HETAK) HSP 1 Score: 173 bits (439), Expect = 3.030e-48 Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query: 4 GLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEVGWCVLERSD 378
G V+SCQNGG C AKD+C CV +S+LW+V+EDA R TGW GTDCS P+C QG++DPFC DLP+AP GE GC+RC+NGG C+APD C CAEGW GYDCR P+CEV +L R +
Sbjct: 389 GAVTSCQNGGQCVAKDNCQCVLTESLLWEVHEDAPRGWTGWAGTDCSTPVCAQGYYDPFCHDLPEAPAGE-----------GCYRCANGGNCTAPDLCTCAEGWTGYDCREPVCEVVADILTREN 502
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7R9U1K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1K2_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.780e-45 Identity = 70/116 (60.34%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 4 GLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
G V C NG IC+ +DDC C T DS+L+ Y +A R TGW GTDCSMPICVQG++DPFCTDL QAP GE GCFRC+N G C+APD C CA GW GYDCRTP+CE
Sbjct: 120 GSVHGCING-ICANRDDCACTTTDSLLYLEYPEAERGDTGWAGTDCSMPICVQGYYDPFCTDLAQAPSGE-----------GCFRCANDGYCTAPDVCSCAPGWTGYDCRTPVCEA 223
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A8J2X4X9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4X9_9STRA) HSP 1 Score: 157 bits (396), Expect = 9.060e-42 Identity = 71/125 (56.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query: 10 VSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTD----LPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEVGWCVLER 372
V++C+NGG+C KD C CVTA SVL + + +A TGW GTDC+MPICVQG+FDPFC+ +PQAPGGE GC+RC NGG C+APD C C EGW GYDCRTP+CE LER
Sbjct: 2525 VAACENGGVCKEKDTCECVTALSVLHEKFPNAPGGATGWQGTDCTMPICVQGYFDPFCSGPIKGIPQAPGGE-----------GCYRCPNGGYCTAPDTCTCTEGWTGYDCRTPVCERVATPLER 2638
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S2FA90_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA90_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.910e-40 Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1
Query: 64 VTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICE 348
+T+ S LW+VYEDANR TGW GTDCSMPIC QGF+DPFCTDL +APGGE GC+RCSNGG C+APD C CA+GW GYDCRTPICE
Sbjct: 711 ITSPSKLWEVYEDANRGTTGWMGTDCSMPICTQGFYDPFCTDLAEAPGGE-----------GCYRCSNGGNCTAPDTCTCADGWGGYDCRTPICE 794
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S3JQX4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQX4_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.280e-39 Identity = 73/159 (45.91%), Postives = 86/159 (54.09%), Query Frame = 1
Query: 19 CQNGGICSAKDDCTC-----------------------------------------VTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEVGWCVLER 372
C NGG C A D CTC + S+L + Y+DA +TGWTGTDC+MP+CVQGF+DPFCTDLPQAPGGE GC+RC+NGG C+APD C CAEGW GYDCRTP+CEV L+R
Sbjct: 1626 CNNGGTCIAPDVCTCKDGWDGFDCSTPLCRHLQTATGVVSGXXXXXXXXXXXXXXXIQVPSILKETYDDAPGGVTGWTGTDCTMPMCVQGFYDPFCTDLPQAPGGE-----------GCYRCANGGNCTAPDTCTCAEGWTGYDCRTPVCEVVATPLQR 1773
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A835Z190_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z190_9STRA) HSP 1 Score: 144 bits (363), Expect = 2.500e-37 Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1
Query: 70 ADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEVGWCVLER 372
A+SVLW+VY DA R TGW GTDCSMP+CVQG FDPFC LPQAPGGE GCFRC+NGG C+APD C CA GW GYDCRTP+CE L R
Sbjct: 1870 AESVLWKVYPDAVRGRTGWGGTDCSMPMCVQGHFDPFCGGLPQAPGGE-----------GCFRCANGGNCTAPDVCACAPGWAGYDCRTPVCEAVADALTR 1959
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A7S2SSM4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSM4_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.670e-37 Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 1 SGLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
SG ++ C G VT +S+LW ++ A R TG+ G+DCSMP+C QGF+DPFCTDLP+APGGE GC+RC+NGG C+APD C C GW GYDCRTP+CE
Sbjct: 86 SGAITGCLYGXXXXXXXXXXXVTTESILWTKHQGAPRGTTGFAGSDCSMPMCTQGFYDPFCTDLPEAPGGE-----------GCYRCANGGNCTAPDTCTCPSGWTGYDCRTPVCEA 191
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Match: A0A482T1I0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1I0_9ARCH) HSP 1 Score: 141 bits (356), Expect = 2.190e-36 Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 64 VTADSVLWQVYEDANRDLTGWTGTDCSMPICVQGFFDPFCTDLPQAPGGEVNLSSALRRGDGCFRCSNGGVCSAPDHCDCAEGWKGYDCRTPICEV 351
V SVL++V+E+ + TGWTG+DCSMPICV G++DPFCTDLPQAPGGE GC+RC+NGG C+APD C CA GW GYDCRTP+CEV
Sbjct: 1743 VQTPSVLYKVHENTLKGKTGWTGSDCSMPICVHGYYDPFCTDLPQAPGGE-----------GCYRCANGGNCTAPDVCTCAPGWTGYDCRTPVCEV 1827 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124475.1837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124475.1837.1 >prot_H-elongata_contig124475.1837.1 ID=prot_H-elongata_contig124475.1837.1|Name=mRNA_H-elongata_contig124475.1837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp SGLVSSCQNGGICSAKDDCTCVTADSVLWQVYEDANRDLTGWTGTDCSMPback to top mRNA from alignment at H-elongata_contig124475:110..981- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124475.1837.1 ID=mRNA_H-elongata_contig124475.1837.1|Name=mRNA_H-elongata_contig124475.1837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=872bp|location=Sequence derived from alignment at H-elongata_contig124475:110..981- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124475:110..981- >mRNA_H-elongata_contig124475.1837.1 ID=mRNA_H-elongata_contig124475.1837.1|Name=mRNA_H-elongata_contig124475.1837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig124475:110..981- (Himanthalia elongata Himel1 dioecious)back to top |