mRNA_H-elongata_contig124471.1836.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE) HSP 1 Score: 261 bits (666), Expect = 3.060e-78 Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVPKSIALNLTVPELVTAFNVEEMA+LVA GP+EHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVT+PYNADFDGDEMNLHVPQ
Sbjct: 404 VGVPKSIALNLTVPELVTAFNVEEMAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQ 533
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI) HSP 1 Score: 261 bits (666), Expect = 3.210e-78 Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVPKSIALNLTVPELVTAFNVEEMA+LVA GP+EHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVT+PYNADFDGDEMNLHVPQ
Sbjct: 400 VGVPKSIALNLTVPELVTAFNVEEMAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQ 529
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA) HSP 1 Score: 217 bits (553), Expect = 5.230e-63 Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVP+SIALNLTVPE+VT FN E + L+ GP EHPGA++I+R DGVRVDLR+VRNK L L G+ VERHL DDD IIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVT+PYNADFDGDEMNLHVPQ
Sbjct: 395 VGVPRSIALNLTVPEMVTTFNQERLLALINKGPYEHPGAKFIIRQDGVRVDLRYVRNKADLALVPGWTVERHLADDDYIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQ 524
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A396ZZC1_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A396ZZC1_9STRA) HSP 1 Score: 211 bits (538), Expect = 2.280e-62 Identity = 95/130 (73.08%), Postives = 116/130 (89.23%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVP+SIA+NLTVPE VT FN+ M +L++ GP+EHPGA+YI+R DG R+DLR++++K+ L L+ G+ VERHLRDDD ++FNRQPSLHKMSIM HRVKVLDWSTFR+N+SVTTPYNADFDGDEMNLHVPQ
Sbjct: 401 VGVPRSIAMNLTVPERVTPFNMVLMHQLISRGPLEHPGAKYIIREDGNRIDLRYIKSKSELALKCGWIVERHLRDDDYVLFNRQPSLHKMSIMAHRVKVLDWSTFRLNISVTTPYNADFDGDEMNLHVPQ 530
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A7S0T970_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0T970_9STRA) HSP 1 Score: 215 bits (548), Expect = 2.470e-62 Identity = 97/130 (74.62%), Postives = 117/130 (90.00%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVP+S+A+NLTVPE VTAFN+ E+++LVA GP HPGA++I+R DG R+DLR+V+NK+ L L +G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKVLDWSTFR+NLS T+PYNADFDGDEMNLHVPQ
Sbjct: 361 VGVPRSVAMNLTVPERVTAFNIHELSQLVANGPTTHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERQLRDDDVILFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQ 490
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: H3GA78_PHYRM (DNA-directed RNA polymerase subunit n=30 Tax=Oomycota TaxID=4762 RepID=H3GA78_PHYRM) HSP 1 Score: 214 bits (545), Expect = 6.260e-62 Identity = 96/130 (73.85%), Postives = 116/130 (89.23%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVP+SIA+NLTVPE VT FN+ M +L+A GP+EHPGA+YI+R DG R+DLR+++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV DWSTFR+NLSVT+PYNADFDGDEMNLHVPQ
Sbjct: 401 VGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQ 530
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A0W8DAF9_PHYNI (DNA-directed RNA polymerase subunit n=3 Tax=Oomycota TaxID=4762 RepID=A0A0W8DAF9_PHYNI) HSP 1 Score: 214 bits (545), Expect = 6.270e-62 Identity = 96/130 (73.85%), Postives = 116/130 (89.23%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVP+SIA+NLTVPE VT FN+ M +L+A GP+EHPGA+YI+R DG R+DLR+++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV DWSTFR+NLSVT+PYNADFDGDEMNLHVPQ
Sbjct: 401 VGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQ 530
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A7S3MJY2_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MJY2_9STRA) HSP 1 Score: 213 bits (541), Expect = 1.500e-61 Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVP+S+AL LTVP VT FN+ E+ +LVA GP+E PGA YI+R D R+DLR+VR+KN + L+YG+ VERHLRDDDI++FNRQPSLHKMSIMGHR K+LDWSTFR+NLSVTTPYNADFDGDEMNLHVPQ
Sbjct: 432 VGVPRSVALILTVPVTVTPFNIHELRQLVANGPLEWPGAMYIIRGDQSRIDLRYVRSKNDIVLEYGWTVERHLRDDDIVLFNRQPSLHKMSIMGHRAKILDWSTFRLNLSVTTPYNADFDGDEMNLHVPQ 561
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A1E7FK73_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK73_9STRA) HSP 1 Score: 213 bits (542), Expect = 1.580e-61 Identity = 95/130 (73.08%), Postives = 118/130 (90.77%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VGVP+S+A+NLTVP+ VTAFN++E+++LV+ GP HPGA++I+R DG R+DLR+V+NK+ L L +G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKVLDWSTFR+NLS T+PYNADFDGDEMNLHVPQ
Sbjct: 363 VGVPRSVAMNLTVPDRVTAFNMQELSQLVSNGPTMHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWVVERQLRDDDVILFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQ 492
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Match: A0A6G3MHI6_HENSL (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MHI6_HENSL) HSP 1 Score: 199 bits (506), Expect = 2.010e-61 Identity = 88/130 (67.69%), Postives = 110/130 (84.62%), Query Frame = 1
Query: 1 VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTTPYNADFDGDEMNLHVPQ 390
VG P+SIA+NL++PE+VT FN+ + +LV GP ++PGA+YI+R G R+DLRF + L LQYGY VERHLRD DII+FNRQP+LHKMS+MGHR++VL WSTFR+NLSVTTPYNADFDGDEMN+H+PQ
Sbjct: 85 VGTPRSIAMNLSIPEIVTPFNISALQELVHNGPTQYPGAKYIIRDTGERIDLRFHPRTSDLHLQYGYVVERHLRDGDIIVFNRQPTLHKMSMMGHRIRVLPWSTFRLNLSVTTPYNADFDGDEMNMHIPQ 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124471.1836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124471.1836.1 >prot_H-elongata_contig124471.1836.1 ID=prot_H-elongata_contig124471.1836.1|Name=mRNA_H-elongata_contig124471.1836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp VGVPKSIALNLTVPELVTAFNVEEMAKLVAAGPMEHPGARYIVRHDGVRVback to top mRNA from alignment at H-elongata_contig124471:460..1686+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124471.1836.1 ID=mRNA_H-elongata_contig124471.1836.1|Name=mRNA_H-elongata_contig124471.1836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1227bp|location=Sequence derived from alignment at H-elongata_contig124471:460..1686+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124471:460..1686+ >mRNA_H-elongata_contig124471.1836.1 ID=mRNA_H-elongata_contig124471.1836.1|Name=mRNA_H-elongata_contig124471.1836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig124471:460..1686+ (Himanthalia elongata Himel1 dioecious)back to top |