mRNA_H-elongata_contig124434.1832.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124434.1832.1
Unique NamemRNA_H-elongata_contig124434.1832.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: D7G6C9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6C9_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 6.780e-56
Identity = 87/107 (81.31%), Postives = 100/107 (93.46%), Query Frame = 1
Query:    4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRAIEFDV 324
            +CIAVIAN E LGLP F+TKYNGKPVLINRSG WV+G+NYIENTINVHRFSFIAKKSLH+LK +FKDMVLHLGFT+EGR+ DELPES+LACSTL+YP ++RA+EFDV
Sbjct:  478 KCIAVIANSESLGLPSFITKYNGKPVLINRSGHWVKGENYIENTINVHRFSFIAKKSLHSLKGLFKDMVLHLGFTVEGRAADELPESLLACSTLHYPMMERAVEFDV 584          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A835YTM0_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.670e-24
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGD-------NYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRAIE 315
            + + V+ N+   GL   +  +NGKPVLI ++G+   G          +E  INVHRF F AKK+LHTL   F+ M+LH+GFTIEGR+PDELPE +LAC+ L YP  D A E
Sbjct:  527 KAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLNYPCPDEAEE 637          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A7S2MX10_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX10_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.820e-23
Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVL 270
            + I ++   EK+G+PGF+T+YNGKP LI +SG + R + YIE  INVH ++++A+K + TL   F  +++++GFTIEGRS  ELPE +L
Sbjct:  168 KAIGLVEEMEKMGIPGFITQYNGKPTLITKSGNFTRHEKYIEMAINVHLWAYVARKGMLTLLPSFAKLLINVGFTIEGRSDMELPEVLL 256          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A482RWA7_9ARCH (DUF1336 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWA7_9ARCH)

HSP 1 Score: 94.0 bits (232), Expect = 1.990e-22
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 IQCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVR--GDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRA 309
            +Q I +  N+E+LG P  +T+YNGKPVLI R+G   +   + Y+E  I+VH+F+ +AK+S++ L +    M +++GF IEGR   ELPE++ AC ++  P+ ++A
Sbjct:   24 LQVICLCTNFEELGFPSMITQYNGKPVLIRRTGTIFKDPANRYLEMNIHVHKFATMAKQSIYMLTSRANSMNMNIGFVIEGREDKELPETLFACCSVSRPQEEQA 128          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: K0RLE4_THAOC (EDR2_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RLE4_THAOC)

HSP 1 Score: 94.0 bits (232), Expect = 4.800e-22
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVR-GDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRAIEFD 321
            +C+ +I + E  G+P F+  YNGKP L+ +SG + R G  YIE TINV R+ ++A+K L  L   F + VL++GFTIEGR  DELPE++L    +     DRA   D
Sbjct:   62 KCMGMIEDVESSGVPQFIAGYNGKPALVTKSGTFTRHGGRYIEFTINVDRWGYLARKGLCALTPSFPNFVLNIGFTIEGRGDDELPEALLGGVRVANLDPDRAYVLD 168          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A7S2U9P4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9P4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.890e-21
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLA 273
            +C+ V+ + EK  +P F+  YNGKP L+ +SGK+ R  NY E  +N+H +SF  KK L  L+  F D +L+ GFTIE R  +ELPE +LA
Sbjct:  101 KCMGVVEDIEKTKIPSFIQGYNGKPALVQKSGKYRRYGNYAEAWVNIHGWSFACKKGLAALRPKFPDFILNTGFTIEARDDEELPEVLLA 190          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A6T8K6G2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8K6G2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.600e-20
Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 IQCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVL 270
            ++ + +I + E   LPGF++++NGKPVLI +S  + R  NYIE  +N+H+++++ KK L +L+  F  +  ++GFTIEGR  DELPE +L
Sbjct:  128 MKAMCLIDDVENSSLPGFISRFNGKPVLITKSSTFTRFPNYIELQVNIHKWAYMPKKGLFSLQPKFPSLAFNVGFTIEGREDDELPEVLL 217          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: A0A7S2M600_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M600_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.250e-20
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    4 QCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVL 270
            +C+  I + E   +P F+  YNGKP L+ +SG + R +NYIE TINV+ ++F+A+K LH+L   F+D + ++GFTIE R  +E+PE +L
Sbjct:  491 KCMGQIEDIESTSIPKFIHGYNGKPALVTKSGTFTRHENYIEFTINVNYWAFLARKGLHSLMPYFQDFIFNVGFTIEARHDEEMPEVLL 579          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: F2UGX6_SALR5 (EDR2_C domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UGX6_SALR5)

HSP 1 Score: 87.4 bits (215), Expect = 6.990e-20
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   25 NYEKLGLPGFVTKYNGKPVLINRSGKWVRG-DN-YIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTL 285
            N+ +LGLP  +  YNGKP LI  +G   RG DN ++E  INVH F  + +KS+H+L+   K MV+HLG TIEG + DELPE +  C  L
Sbjct:    6 NFRELGLPTLLEGYNGKPALIKATGTVCRGKDNAFLEMCINVHSFPVLTRKSIHSLRGKMKQMVVHLGTTIEGHADDELPERIAFCCRL 94          
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Match: W7U5D7_9STRA (EDR2_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5D7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.170e-19
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 IQCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDN--------YIENTINVHRFSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRLDRAIEFD 321
            ++ IA  AN + L LP F++ YNGKPVLI +SG+  +G +        YIE  I VHRF+++A+K    L+  F  M+L + F +EGR  DELPE +L  + L     + A+E D
Sbjct:  282 LKVIASCANMDALHLPSFISNYNGKPVLITKSGRLHQGISSSNGEDLLYIEMDICVHRFAYVARKGFRYLQKRFSKMILDIAFLVEGREEDELPEQILGAARLNNVDYEAAVEGD 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124434.1832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6C9_ECTSI6.780e-5681.31PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835YTM0_9STRA4.670e-2448.65EDR2_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2MX10_9STRA9.820e-2348.31Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A482RWA7_9ARCH1.990e-2240.95DUF1336 domain-containing protein n=1 Tax=archaeon... [more]
K0RLE4_THAOC4.800e-2244.86EDR2_C domain-containing protein n=1 Tax=Thalassio... [more]
A0A7S2U9P4_9STRA1.890e-2146.67Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6T8K6G2_9STRA3.600e-2043.33Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2M600_9STRA5.250e-2044.94Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
F2UGX6_SALR56.990e-2049.44EDR2_C domain-containing protein n=1 Tax=Salpingoe... [more]
W7U5D7_9STRA3.170e-1940.87EDR2_C domain-containing protein n=2 Tax=Monodopsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124434contigH-elongata_contig124434:467..1339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue9.7e-47
Seed eggNOG ortholog2880.D7G6C9
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28II8@1,2QQV7@2759
Ec32 ortholog descriptionDomain of unknown function DUF1336
Ec32 orthologEc-10_001400.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124434.1832.1prot_H-elongata_contig124434.1832.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124434 467..1339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.7793438-CDS-H-elongata_contig124434:466..5691622929732.7793438-CDS-H-elongata_contig124434:466..569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124434 467..569 +
1691679136.8186655-CDS-H-elongata_contig124434:466..5691691679136.8186655-CDS-H-elongata_contig124434:466..569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124434 467..569 +
1622929732.7960541-CDS-H-elongata_contig124434:781..8671622929732.7960541-CDS-H-elongata_contig124434:781..867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124434 782..867 +
1691679136.830385-CDS-H-elongata_contig124434:781..8671691679136.830385-CDS-H-elongata_contig124434:781..867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124434 782..867 +
1622929732.8134556-CDS-H-elongata_contig124434:1201..13391622929732.8134556-CDS-H-elongata_contig124434:1201..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124434 1202..1339 +
1691679136.8402998-CDS-H-elongata_contig124434:1201..13391691679136.8402998-CDS-H-elongata_contig124434:1201..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124434 1202..1339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124434.1832.1

>prot_H-elongata_contig124434.1832.1 ID=prot_H-elongata_contig124434.1832.1|Name=mRNA_H-elongata_contig124434.1832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
IQCIAVIANYEKLGLPGFVTKYNGKPVLINRSGKWVRGDNYIENTINVHR
FSFIAKKSLHTLKTIFKDMVLHLGFTIEGRSPDELPESVLACSTLYYPRL
DRAIEFDV*
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mRNA from alignment at H-elongata_contig124434:467..1339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124434.1832.1 ID=mRNA_H-elongata_contig124434.1832.1|Name=mRNA_H-elongata_contig124434.1832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig124434:467..1339+ (Himanthalia elongata Himel1 dioecious)
ATTCAGTGCATCGCGGTGATCGCCAACTACGAGAAACTGGGTCTCCCTGG ATTCGTCACCAAGTACAACGGAAAGCCCGTGCTCATCAACCGGAGTGGGA AATGTGAGGGTTGTTCTCATGCGACGTTGATTTGTTGTGAACCGGTACTC TTATTAAATGTCGCTCGCTGGGAAACCAACCCAACATGTACCCTTTTCTC ATGAACGATCAATCATATATATGTGCTGATGCGGTAGTCAAGTATTCTTT ATTATACGGCATTAATTTACTCACGCCGTTTTGTACACCGCCATCACGCG ATAACGCCATCACAGGGGTTAGGGGGGACAACTACATCGAAAACACCATC AATGTGCACAGATTCAGCTTCATCGCAAAGAAAAGCTTGCACACGCTCAA GGTGAGGTCAAGTCGCGTCACGTCGAGGCGGCGACCGCAGCTTCGTGTCA ATGGTCGCTCCTCCAATATCTTGCGACAGTGTTCGAAGTTCAATATTTGC CGCCCGTGAATCATACTCTTCGTTCAGTGTATCCCTGCCCAAGTATCCAA CCGCCTGTGCCCTTGAAGGCTTGGGCGCAGCTCAATGGTATTTGAGTGAT ATTTGAGTGACAACGAAGCCTCTCGCTATTATTACTACATAATATATTTA AAAATGAGTGCTCAGTCAAAACTCAATAACGAAGCCTATCGTTTACACCC CCGCGTGTTCTATTTTCAACCCATTTTTATCCCAGACAATTTTCAAGGAC ATGGTTCTGCACTTGGGCTTCACGATCGAGGGTCGCTCGCCGGACGAACT ACCAGAGTCTGTGCTGGCGTGTTCAACCTTGTACTACCCTAGGCTAGATA GAGCCATCGAGTTTGACGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig124434:467..1339+

>mRNA_H-elongata_contig124434.1832.1 ID=mRNA_H-elongata_contig124434.1832.1|Name=mRNA_H-elongata_contig124434.1832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig124434:467..1339+ (Himanthalia elongata Himel1 dioecious)
ATTCAGTGCATCGCGGTGATCGCCAACTACGAGAAACTGGGTCTCCCTGG
ATTCGTCACCAAGTACAACGGAAAGCCCGTGCTCATCAACCGGAGTGGGA
AATATTCAGTGCATCGCGGTGATCGCCAACTACGAGAAACTGGGTCTCCC
TGGATTCGTCACCAAGTACAACGGAAAGCCCGTGCTCATCAACCGGAGTG
GGAAATGGGTTAGGGGGGACAACTACATCGAAAACACCATCAATGTGCAC
AGATTCAGCTTCATCGCAAAGAAAAGCTTGCACACGCTCAAGGGGTTAGG
GGGGACAACTACATCGAAAACACCATCAATGTGCACAGATTCAGCTTCAT
CGCAAAGAAAAGCTTGCACACGCTCAAGACAATTTTCAAGGACATGGTTC
TGCACTTGGGCTTCACGATCGAGGGTCGCTCGCCGGACGAACTACCAGAG
TCTGTGCTGGCGTGTTCAACCTTGTACTACCCTAGGCTAGATAGAGCCAT
CGAGTTTGACGTTTGAACAATTTTCAAGGACATGGTTCTGCACTTGGGCT
TCACGATCGAGGGTCGCTCGCCGGACGAACTACCAGAGTCTGTGCTGGCG
TGTTCAACCTTGTACTACCCTAGGCTAGATAGAGCCATCGAGTTTGACGT
TTGA
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