mRNA_H-elongata_contig124422.1831.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124422.1831.1
Unique NamemRNA_H-elongata_contig124422.1831.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124422.1831.1 vs. uniprot
Match: D8LKD9_ECTSI (MABP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD9_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 3.580e-58
Identity = 107/155 (69.03%), Postives = 119/155 (76.77%), Query Frame = 1 
Query:    1 QAMCDSLDHVAEERFPLALSFFETLVRTSEGRLGPLALQRTFLGLSFLCSYACSSRGWVQAGSGDQGPLRDDDPALRSLKDLLRLVCRQVEIAEETRAALRRTRVAGTGVGVGTNRQLAAATPAAMAIPTWDSYTPMVHVRSGGD--ASWAATPD 459
            + MCDSLDHV E+RFP+AL FFE LVRTSEGRLGPLALQRTF GLSFLC+Y CSSR WVQA  G +GPL DD+PA  +LKDLLRLVC QVEIAEE R A RR+R+ GTG     +  L A TP  MAIPTWD+YTPMV V+ GG   A WA TPD
Sbjct:  672 EVMCDSLDHVTEDRFPIALEFFEALVRTSEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNPAFSALKDLLRLVCGQVEIAEEAREAFRRSRMTGTGP----HGPLLATTPGIMAIPTWDTYTPMV-VKGGGREAAPWARTPD 821
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BLAST of mRNA_H-elongata_contig124422.1831.1 vs. uniprot
Match: A0A6H5KWN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN7_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.130e-37
Identity = 65/89 (73.03%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 QAMCDSLDHVAEERFPLALSFFETLVRTSEGRLGPLALQRTFLGLSFLCSYACSSRGWVQAGSGDQGPLRDDDPALRSLKDLLRLVCRQ 267
            + +CDSLDHVAE+RFP+AL FFE LVR SEGRLGPLALQRTF GLSFLC+Y CSSR WVQA  G +GPL DD+ A  +LK LLRLVC Q
Sbjct:   44 EVICDSLDHVAEDRFPIALEFFEALVRISEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNRAFSALKYLLRLVCGQ 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124422.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKD9_ECTSI3.580e-5869.03MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWN7_9PHAE2.130e-3773.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124422contigH-elongata_contig124422:245..1467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001120.1
Hectar predicted targeting categoryother localisation
Exons2
Model size462
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124422.1831.1prot_H-elongata_contig124422.1831.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124422 251..1467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.692713-UTR-H-elongata_contig124422:244..2501622929732.692713-UTR-H-elongata_contig124422:244..250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124422 245..250 +
1691679136.7883623-UTR-H-elongata_contig124422:244..2501691679136.7883623-UTR-H-elongata_contig124422:244..250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124422 245..250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.7268753-CDS-H-elongata_contig124422:250..5111622929732.7268753-CDS-H-elongata_contig124422:250..511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124422 251..511 +
1691679136.799497-CDS-H-elongata_contig124422:250..5111691679136.799497-CDS-H-elongata_contig124422:250..511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124422 251..511 +
1622929732.7391014-CDS-H-elongata_contig124422:1272..14671622929732.7391014-CDS-H-elongata_contig124422:1272..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124422 1273..1467 +
1691679136.8085613-CDS-H-elongata_contig124422:1272..14671691679136.8085613-CDS-H-elongata_contig124422:1272..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124422 1273..1467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124422.1831.1

>prot_H-elongata_contig124422.1831.1 ID=prot_H-elongata_contig124422.1831.1|Name=mRNA_H-elongata_contig124422.1831.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MCDSLDHVAEERFPLALSFFETLVRTSEGRLGPLALQRTFLGLSFLCSYA
CSSRGWVQAGSGDQGPLRDDDPALRSLKDLLRLVCRQVEIAEETRAALRR
TRVAGTGVGVGTNRQLAAATPAAMAIPTWDSYTPMVHVRSGGDASWAATP
DQ
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mRNA from alignment at H-elongata_contig124422:245..1467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124422.1831.1 ID=mRNA_H-elongata_contig124422.1831.1|Name=mRNA_H-elongata_contig124422.1831.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1223bp|location=Sequence derived from alignment at H-elongata_contig124422:245..1467+ (Himanthalia elongata Himel1 dioecious)
CAGGCCATGTGCGATTCGCTGGACCACGTCGCCGAAGAGCGCTTCCCGCT
TGCCCTTTCTTTCTTCGAGACCCTCGTGAGGACGTCGGAGGGCCGCCTGG
GACCGCTCGCCCTCCAGCGAACGTTTCTTGGGCTATCATTCTTGTGTTCT
TACGCGTGCTCGTCGAGGGGATGGGTGCAGGCAGGGTCCGGAGATCAGGG
CCCCCTGAGGGACGACGACCCTGCACTGCGCTCCCTTAAGGACTTGCTCC
GGCTCGTTTGCCGCCAGGTTCGTTCTTAGTGACAGGGGGGACAGGAGGTA
GATACAGTAGTCGGTGGTGTTTAGCGCTTGTTTTTCTCCCCGGTTGGTTC
ACGCCTTCCTACGAATTTTCTAGTCGCGATGCAATACACCGGCACTCACC
GTTGCCGTCTTGCCTGTTCAAGTGGTTGTGTAGATTAAAGGGTCTTTTTT
TCATCTCTTACTAATAGTTAAAACACATAGGCTGATACGAGGAGGTAAAA
TAACTGTTTTTACGTGGTGGGGAAGGCGCGGAGGCGTTTTCGATCCGGGA
AGGGAATTGTCTTGTGGGTGAAGTGGTTTATCGCACTTTATCCGTGTACA
ACAGCTGATATCATTTGGAGCCAATCGGAGGGATGACGTGCGTGGAGACT
TTTTCTTTAGCCTCTTTCGAAACGGCACACAAGTTATGTCCGAATGTACT
TGACGCTTTTGCGTAGACTCAAAACTTTCGTGAGTACGAACGGTTCCACG
GTAGCGTCAAGTAGTTTGGGGGTTTGGGGGATTCTTTCTCTTTCAGGCGC
TTTTTTCGTCTTTCGTCCTTTTTTCCGTCTTTTTTTCTTCTTCTCCTTCG
AATTTTGTAACAATTTTCACAAAAATTTCATTATTGTTTTTTGTTTTGTT
TTTTCCTTTTGCCCCTCCCCCCCCACGTACAGCTAAATACATAGCAGAGC
AGCATTTAAATCCCTTTCAAATGTTATTACTTTTAATAGTGTAGTGCGGT
GACAGTTCTGTGGTGACCACGATACCAGGTTGAAATTGCTGAGGAAACAC
GCGCGGCGTTACGGCGAACTCGGGTCGCGGGGACTGGGGTAGGGGTCGGG
ACAAATAGACAGCTCGCCGCGGCTACTCCTGCGGCGATGGCGATCCCAAC
GTGGGACAGTTATACGCCAATGGTGCACGTGAGGAGCGGAGGCGACGCCT
CTTGGGCTGCAACTCCCGATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig124422:245..1467+

>mRNA_H-elongata_contig124422.1831.1 ID=mRNA_H-elongata_contig124422.1831.1|Name=mRNA_H-elongata_contig124422.1831.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig124422:245..1467+ (Himanthalia elongata Himel1 dioecious)
ATGTGCGATTCGCTGGACCACGTCGCCGAAGAGCGCTTCCCGCTTGCCCT
TTCTTTCTTCGAGACCCTCGTGAGGACGTCGGAGGGCCGCCTGGGACCGC
TCGCCCTCCAGCGAACGTTTCTTGGGCTATCATTCTTGTGTTCTTACGCG
TGCTCGTCGAGGGGATGGGTGCAGGCAGGGTCCGGAGATCAGGGCCCCCT
GAGGGACGACGACCCTGCACTGCGCTCCCTTAAGGACTTGCTCCGGCTCG
TTTGCCGCCAGATGTGCGATTCGCTGGACCACGTCGCCGAAGAGCGCTTC
CCGCTTGCCCTTTCTTTCTTCGAGACCCTCGTGAGGACGTCGGAGGGCCG
CCTGGGACCGCTCGCCCTCCAGCGAACGTTTCTTGGGCTATCATTCTTGT
GTTCTTACGCGTGCTCGTCGAGGGGATGGGTGCAGGCAGGGTCCGGAGAT
CAGGGCCCCCTGAGGGACGACGACCCTGCACTGCGCTCCCTTAAGGACTT
GCTCCGGCTCGTTTGCCGCCAGGTTGAAATTGCTGAGGAAACACGCGCGG
CGTTACGGCGAACTCGGGTCGCGGGGACTGGGGTAGGGGTCGGGACAAAT
AGACAGCTCGCCGCGGCTACTCCTGCGGCGATGGCGATCCCAACGTGGGA
CAGTTATACGCCAATGGTGCACGTGAGGAGCGGAGGCGACGCCTCTTGGG
CTGCAACTCCCGATCAGGTTGAAATTGCTGAGGAAACACGCGCGGCGTTA
CGGCGAACTCGGGTCGCGGGGACTGGGGTAGGGGTCGGGACAAATAGACA
GCTCGCCGCGGCTACTCCTGCGGCGATGGCGATCCCAACGTGGGACAGTT
ATACGCCAATGGTGCACGTGAGGAGCGGAGGCGACGCCTCTTGGGCTGCA
ACTCCCGATCAG
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