mRNA_H-elongata_contig124420.1830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124420.1830.1
Unique NamemRNA_H-elongata_contig124420.1830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: D7FL75_ECTSI (DNA-damage repair protein drt111, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL75_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.450e-47
Identity = 83/101 (82.18%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEMK 303
            GLGAS+QGISQPLQSM+AGGGMGVIDMH +DKKRMGG  D     A P RKKRGLFSNPTRVLLLKNMVGPGEVD ELEGET GECERFGPVRRC+I+E+K
Sbjct:  308 GLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTP---AAPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 405
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A6H5KK36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK36_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.480e-47
Identity = 83/101 (82.18%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEMK 303
            GLGAS+QGISQPLQSM+AGGGMGVIDMH +DKKRMGG  D     AP  RKKRGLFSNPTRVLLLKNMVGPGEVD ELEGET GECERFGPVRRC+I+E+K
Sbjct:  323 GLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTP---APAARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 420
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A6U3SBK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SBK6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.330e-26
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEMK 303
            GLG   QGIS+PL++   GGG G +        +   T    PP  P  +KKR LF NPT VLLLKNMVGPGEVD+ELE E Q EC +FGPVR C+++E+K
Sbjct:   45 GLGREGQGISRPLEARPTGGGQGAVANPGARGNQKLST-SMLPPPGPAAKKKRALFRNPTTVLLLKNMVGPGEVDSELEKEVQEECSKFGPVRTCVVYELK 144
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A835ZCV1_9STRA (Putative DNA-damage repair protein drt111 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCV1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.780e-23
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFE 297
            GLG S QGISQP+ + + G GMG + MH  D+KR                 KRGLFSNPT VLLLKNMVG GEVD++LEGE + EC ++GPVR+C++ E
Sbjct:  260 GLGKSGQGISQPIVAQSTGVGMGTVAMHPADRKRPAQAAXXXXXXXX-XSAKRGLFSNPTCVLLLKNMVGAGEVDSDLEGEVKEECMKYGPVRQCLVRE 357
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: W7TGN1_9STRA (RNA binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGN1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.480e-22
Identity = 50/104 (48.08%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTG----DPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM 300
            GLG  +QGI++ +++ A GGG GVI          GG G    D           KRGLFSNPT+++LLKNMVGPGEVD +L+GET  EC + GPV  C++FE+
Sbjct:   11 GLGRDRQGITEAIKARALGGGKGVIS-----GPAQGGKGAQDVDRQQXXXXXXXXKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEV 109
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A7S2W0J2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0J2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.400e-18
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:  127 PPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEMK 303
            PP  PP +KKR LF NP+ VLLLKNMVGPGEVD +L+ E   EC +FGPVR+C+++E K
Sbjct:   65 PPQGPP-KKKRALFRNPSSVLLLKNMVGPGEVDEDLQNEVAEECSKFGPVRQCVVYEHK 122
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A7I8VH22_9ANNE (Splicing factor 45 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VH22_9ANNE)

HSP 1 Score: 77.8 bits (190), Expect = 8.870e-15
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:  139 PPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM 300
            PP+     L  NP++V++L+NMVGPGEVD ELE ET+GEC+++GPV RC+IFE+
Sbjct:  241 PPIENIGELLKNPSKVVVLRNMVGPGEVDDELEPETKGECQKYGPVVRCVIFEL 294
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A433TQH0_ELYCH (Splicing factor 45 n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TQH0_ELYCH)

HSP 1 Score: 72.0 bits (175), Expect = 9.420e-14
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM 300
            GLG S+QG+S  L         G I +H+ D            P A        L  NP++VLLL+NMVGPGEVD +LE ET  EC ++G V +C+IFEM
Sbjct:   11 GLGKSEQGMSTALYVEKTSKRGGKI-IHEKDI-----------PKAEQAITNTNLLKNPSKVLLLQNMVGPGEVDEDLEPETAEECSKYGKVNKCVIFEM 98
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A0S7IEE7_9TELE (SPF45 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IEE7_9TELE)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-13
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:    1 GLGASKQGISQPL---QSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRG-------LFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM 300
            GLG  +QG+S  L   ++   GG + + D  +       G  DP+   +     K+        +  NPT+V+LL+NMVG GEVD +LEGET+ ECE++G V +C+IFE+
Sbjct:   39 GLGKHEQGLSTALSVEKTSKRGGKIIIGDAAEKPGSSQSGAADPSSGGSAADSSKKSEANPLTEILKNPTKVVLLRNMVGRGEVDEDLEGETKEECEKYGKVVKCVIFEI 148
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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: UPI00081135BE (splicing factor 45-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI00081135BE)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-13
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFE 297
            GLG  +QGIS+ LQ        G I +    KK       P  PL P            T V+LL+NMVGPGEVD ELE ET+ EC ++GPV RC+IFE
Sbjct:  153 GLGKEEQGISKALQVEKTSKTHGKIVIESDAKK-------PEDPLTP------------TTVVLLRNMVGPGEVDEELEPETKEECSKYGPVSRCVIFE 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL75_ECTSI1.450e-4782.18DNA-damage repair protein drt111, putative n=1 Tax... [more]
A0A6H5KK36_9PHAE1.480e-4782.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U3SBK6_9STRA1.330e-2653.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZCV1_9STRA1.780e-2353.54Putative DNA-damage repair protein drt111 n=1 Tax=... [more]
W7TGN1_9STRA7.480e-2248.08RNA binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A7S2W0J2_9STRA8.400e-1862.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7I8VH22_9ANNE8.870e-1559.26Splicing factor 45 n=1 Tax=Dimorphilus gyrociliatu... [more]
A0A433TQH0_ELYCH9.420e-1443.00Splicing factor 45 n=1 Tax=Elysia chlorotica TaxID... [more]
A0A0S7IEE7_9TELE1.240e-1338.18SPF45 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
UPI00081135BE1.390e-1345.45splicing factor 45-like n=1 Tax=Rhagoletis zephyri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124420contigH-elongata_contig124420:91..1654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3.1e-39
Seed eggNOG ortholog2880.D7FL75
Preferred nameRBM17
KEGG koko:K12840
KEGG Pathwayko03040,map03040
GOsGO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001654,GO:0001745,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009507,GO:0009536,GO:0009653,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048024,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090596,GO:1901360,GO:1903311
EggNOG free text desc.regulation of RNA splicing
EggNOG OGsKOG1996@1,KOG1996@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size303
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124420.1830.1prot_H-elongata_contig124420.1830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124420 91..1654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.6235557-CDS-H-elongata_contig124420:90..1911622929732.6235557-CDS-H-elongata_contig124420:90..191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124420 91..191 +
1691679136.759075-CDS-H-elongata_contig124420:90..1911691679136.759075-CDS-H-elongata_contig124420:90..191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124420 91..191 +
1622929732.6383972-CDS-H-elongata_contig124420:842..9391622929732.6383972-CDS-H-elongata_contig124420:842..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124420 843..939 +
1691679136.769282-CDS-H-elongata_contig124420:842..9391691679136.769282-CDS-H-elongata_contig124420:842..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124420 843..939 +
1622929732.652024-CDS-H-elongata_contig124420:1549..16541622929732.652024-CDS-H-elongata_contig124420:1549..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124420 1550..1654 +
1691679136.7781122-CDS-H-elongata_contig124420:1549..16541691679136.7781122-CDS-H-elongata_contig124420:1549..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124420 1550..1654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124420.1830.1

>prot_H-elongata_contig124420.1830.1 ID=prot_H-elongata_contig124420.1830.1|Name=mRNA_H-elongata_contig124420.1830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVR
KKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM
K
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mRNA from alignment at H-elongata_contig124420:91..1654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124420.1830.1 ID=mRNA_H-elongata_contig124420.1830.1|Name=mRNA_H-elongata_contig124420.1830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1564bp|location=Sequence derived from alignment at H-elongata_contig124420:91..1654+ (Himanthalia elongata Himel1 dioecious)
GGTCTGGGGGCTTCAAAGCAAGGCATCAGCCAGCCGCTGCAGTCCATGGC
TGCGGGCGGTGGGATGGGAGTGATCGATATGCACCAGACCGATAAGAAGC
GGTAAGCTCTGGGCTTTTGACAGTCCCGAAGAGTCGGAAGGGGCTGTCAA
TCAACAAGAGTGTGCAATTTTATCTCATATCAGTTGGTGTGGCGACAAGA
TCGAAACGATCACACGCAAGGACGGCGCACTGACTTGTGTGGTGTGTGTT
GTGCTGTGTTGTGGTGTGGTGTGCGGTATGGGATATACGGGCATTCGAGT
CGCTGGTGAGGTTGGGGAAGGCGGTGGTATTTTGGAGCTAGACATGCCTT
AGGTATTGTCCGTTTAGGTATATGTCTGTGTGTGTCTTTGATTTCTCAAG
GGATACAAAAATATAGGGTTAGGGTAAAATATACTGGTATCAGTTTATCA
AGTGTGGGGACAAATGGCTCCCAATAGTCCCAACACGATGTGGATGTTCG
GAGGGTTGGAATGAGTTCAAGTTTTTTTTATTAGTACAGTAATAATACGA
TAATACTATACACTATACGGTATTAAAACGCCCTTTGCCTTTGCAGGCGG
AAATATTAAATACTGTAATAATACGATAATACGATAATACATTACCCTAG
TAATAGAATCTACCGTAATGTCCGCTGTCCGCTGATCGTCTGCGCCTACT
GTCTGACAATGCTGCCGATGTTGCCCCACCCCCCCCATCCACTTTATTTT
AGAATGGGAGGGACAGGAGACCCCGCTCCACCTCTGGCGCCACCCGTTCG
GAAAAAGCGCGGATTATTTTCCAATCCTACCCGAGTTCTTCTCCTTAAGG
TACAGCTTAATTTTCTCATTAAGGTACATGGAGAGGGGGTTGAAAGATGA
AAATCCCCCCCTTGGGTAAGATGAGATGAGATGCGATGAGATGAGATGAG
ATGCGGTGAGGTGCGGTTTCCATTACATCAGTACCACAGTAGCATCTCTG
CCGCAATCAAGTACATCAACGAATGCCCTGTCATGGCATGACACCTTGTT
CAAGCAGATCTTGGCAAGAGTCCTCGAAATCCACAGTGCTAGACTAGTTT
TTTTCCAAAATTGTTCCTCTTGTCGAGCTGGTCGAGCGGGCCCTCGGGCA
CGTTCATCAAACATCCCCGGGGTGGGGAAGGATGGAGGCGGGAGGGTAGA
CATCTTCGCCCACTGCAGACGTAACATGTTACTAGATGTTACTAGATGTT
ACCACCTTCATGTTACTATTAAACCACTTAGTTAATGCGTCAAGTAATTG
CTCTGTACAGTACAGCGGTATGTGTTCGATTGCTGCCTCAGCCCCCCCCA
TCCCCCCCCATCCCCTCCCCTACAAACCTCTTATACTACCAAAGCCGTGA
CTCAGCCTTCACCCAACGATTGGCGCCACGCGTCGTGCTTCCGAATGTGA
AATGGACAGAACATGGTGGGACCGGGAGAGGTGGATGCTGAGCTCGAGGG
GGAGACACAGGGGGAGTGCGAGCGATTCGGTCCCGTCCGTCGTTGCATCA
TCTTCGAGATGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig124420:91..1654+

>mRNA_H-elongata_contig124420.1830.1 ID=mRNA_H-elongata_contig124420.1830.1|Name=mRNA_H-elongata_contig124420.1830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig124420:91..1654+ (Himanthalia elongata Himel1 dioecious)
GGTCTGGGGGCTTCAAAGCAAGGCATCAGCCAGCCGCTGCAGTCCATGGC
TGCGGGCGGTGGGATGGGAGTGATCGATATGCACCAGACCGATAAGAAGC
GGGTCTGGGGGCTTCAAAGCAAGGCATCAGCCAGCCGCTGCAGTCCATGG
CTGCGGGCGGTGGGATGGGAGTGATCGATATGCACCAGACCGATAAGAAG
CGAATGGGAGGGACAGGAGACCCCGCTCCACCTCTGGCGCCACCCGTTCG
GAAAAAGCGCGGATTATTTTCCAATCCTACCCGAGTTCTTCTCCTTAAGA
ATGGGAGGGACAGGAGACCCCGCTCCACCTCTGGCGCCACCCGTTCGGAA
AAAGCGCGGATTATTTTCCAATCCTACCCGAGTTCTTCTCCTTAAGAACA
TGGTGGGACCGGGAGAGGTGGATGCTGAGCTCGAGGGGGAGACACAGGGG
GAGTGCGAGCGATTCGGTCCCGTCCGTCGTTGCATCATCTTCGAGATGAA
GAACATGGTGGGACCGGGAGAGGTGGATGCTGAGCTCGAGGGGGAGACAC
AGGGGGAGTGCGAGCGATTCGGTCCCGTCCGTCGTTGCATCATCTTCGAG
ATGAAG
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