mRNA_H-elongata_contig12440.1828.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: D7FJM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM0_ECTSI) HSP 1 Score: 248 bits (633), Expect = 2.090e-75 Identity = 155/303 (51.16%), Postives = 191/303 (63.04%), Query Frame = 1
Query: 1 RGVLESLAEELAAFCQHLPDHERTVYLFQDNCKILTGERKGDQYTSPWCFRQLCRVAGAA-------------------DSVSSLASRLLSSLDGDDLALLAGYLVRTKRAVREERILKVTSAGSTGRRWTSANTASSGISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSALADAGTSF-KDPSERAELE 849
R VLE LAE++ +CQHLP ERTVYL R Q+ SPW F QLCR A + + SS R+L+ + DD+AL A YLVRTKRAV E +LKV S G R +A T +SET+KD+LRLRCTV SL+ +A+DL RI ++DAL E R+G+KQAALVH+RRMKQ QAARDKRLSSLL LE ALDQ VK L++DKQVLEAHEAAT+AL++CRE+ GLT+ERVE TLDA+AEEM + + + +AL G +D E AELE
Sbjct: 147 RNVLEDLAEQVVGYCQHLPPDERTVYLLAAVHSETAASRPVAQHASPWNFEQLCRAAASEAAATTTATRVASGRAPPTPEKCSSAVPRMLARISSDDVALFAKYLVRTKRAVTEGGLLKVLSRGGGSRVAAAAAT----VSETEKDLLRLRCTVASLEASASDLGLRIQRVQQDALMENRRGQKQAALVHLRRMKQYQAARDKRLSSLLTLETALDQ------------VKQLRLDKQVLEAHEAATSALKACRETQGLTVERVENTLDALAEEMAEAEAVGTALGQDGALLGQDEGETAELE 433
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: A0A6H5L709_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L709_9PHAE) HSP 1 Score: 246 bits (628), Expect = 8.840e-75 Identity = 155/308 (50.32%), Postives = 192/308 (62.34%), Query Frame = 1
Query: 1 RGVLESLAEELAAFCQHLPDHERTVYLFQDNCKILTGERKGDQYTSPWCFRQLCRVAGAA---------------------DSVSSLASRLLSSLDGDDLALLAGYLVRTKRAVREERILKVTSAGSTGRRWTSANTASSGISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSALADAGTSF-KDPSERAELEAEL 858
R VLE LAE++ +CQHLP +E TVYL + Q+ SPW F QLCR A AA + S A R+L+ + DD+AL A YLVRTKRAV E +LKV G R A + +SET+KD+LRLRCTV SL+ +A+DL RI ++DAL E R+G+K+AALVH+RRMKQ QAARDKRLSSLL LE ALDQ VK L++DKQVLEAHEAATNAL++CRE+ GLT+ERVE TLDA+A EM + + + +AL G +D E AELEAEL
Sbjct: 140 RNVLEDLAEQVVGYCQHLPPNESTVYLLAAGHSEASASCPVAQHASPWNFEQLCRTAAAAAEDAATATATRVASGRGPPTPEKCSVAAPRMLAHMSSDDVALFAKYLVRTKRAVTEGGLLKVLFRGGGNR----VAAAGATVSETEKDLLRLRCTVASLEASASDLGLRIQRVQQDALMENRRGQKRAALVHLRRMKQYQAARDKRLSSLLTLETALDQ------------VKQLRLDKQVLEAHEAATNALKACRETQGLTVERVEDTLDALAGEMAEAEAVGAALGQEGALLGQDEGETAELEAEL 431
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: A0A7S2Y185_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y185_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.420e-8 Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 1
Query: 358 GISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHW-QVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSALADAGTSFKDPSERAELEA 852
G+ E D+ L L CT+ + L R++ R +A +++G+K+AAL +R + + +K LS +A+ A LDQA W V + +++AH+AAT ALRS +E GL+++ V+ LD+M EE+ + Q+I+ LA +P + EL A
Sbjct: 323 GVEEADRARLMLACTIHKTRSEVNRLHGRVEKERSEAKDWLKKGQKEAALARLRVCRLV----EKGLSQQVAVLANLDQA---------WLAVGQALSTRDIVDAHKAATQALRSSKE--GLSLDDVDDILDSMQEEIDEHQEINERLASMVDLNSNPEDDEELAA 473
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: A0A165KX28_EXIGL (Uncharacterized protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165KX28_EXIGL) HSP 1 Score: 63.5 bits (153), Expect = 9.840e-8 Identity = 52/195 (26.67%), Postives = 95/195 (48.72%), Query Frame = 1
Query: 217 SLDGDDLALLAGYLVRTKRA-VREERILKVTSAGSTGRRWTSANTASSGISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSAL 798
+L D+ +L YL R KR V ++ ++K ST + I+E D+ +L ++ V L+ D+R++I + +R +K A+ ++R KQL+ KRL +L L++ L ++ D ++++A+E + LR+ ++ L ERV+ TLD MAE + Q++I A+
Sbjct: 215 TLSDTDIKVLIRYLSRDKRCIVADKEVVKFVEVDSTA----------TSITEVDRGVLEMQMAVERLETQVEDIRKQIAQRTERIATALRAAQKTLAMSYLRSRKQLEDLLSKRLGALDTLQSQLSA------------IERAVGDAEIMQAYETSARTLRTALQNPLLQRERVDATLDDMAEALADQREIDDAI 387
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: UPI00044082B8 (Snf7-domain-containing protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI00044082B8) HSP 1 Score: 58.9 bits (141), Expect = 3.370e-6 Identity = 47/166 (28.31%), Postives = 83/166 (50.00%), Query Frame = 1
Query: 361 ISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSALADAGTSFKDPSERAELEAEL 858
IS DK IL L+ V ++++ L +RI + + + K+ A+ H++ KQ + KRL SL L+A L Q V+ D ++++ +E++T LR+ L ER++ T+DAMAE +Q+++ A+ + + + EL+AEL
Sbjct: 259 ISSIDKGILELKTAVENMELQIEALNKRITEKIQKIKECLGANRKEVAMTHLKSRKQYEDLLRKRLGSLEVLQATLIQ------------VEAAAQDVEIMKQYESSTATLRAILSHPSLQRERIDATMDAMAEASAEQREVDEAIRTGMSGITEDVDEDELQAEL 412 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12440.1828.1 >prot_H-elongata_contig12440.1828.1 ID=prot_H-elongata_contig12440.1828.1|Name=mRNA_H-elongata_contig12440.1828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp RGVLESLAEELAAFCQHLPDHERTVYLFQDNCKILTGERKGDQYTSPWCFback to top mRNA from alignment at H-elongata_contig12440:6070..8482+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12440.1828.1 ID=mRNA_H-elongata_contig12440.1828.1|Name=mRNA_H-elongata_contig12440.1828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2413bp|location=Sequence derived from alignment at H-elongata_contig12440:6070..8482+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12440:6070..8482+ >mRNA_H-elongata_contig12440.1828.1 ID=mRNA_H-elongata_contig12440.1828.1|Name=mRNA_H-elongata_contig12440.1828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig12440:6070..8482+ (Himanthalia elongata Himel1 dioecious)back to top |