mRNA_H-elongata_contig124336.1825.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124336.1825.1
Unique NamemRNA_H-elongata_contig124336.1825.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.760e-28
Identity = 62/139 (44.60%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTGGR 420
            CD I +QETRR+G+ +I    DGYV+  SG   G   K G+ GVG A++E++  ++G +G   + IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + + EV   DHL++ MDANARTG R
Sbjct:   12 CDVIGLQETRREGQGSIAH--DGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.500e-27
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTGGR 420
            CD I +QETRR+G+ +I    DGYV+  SG   G   K G+ GVG+A++E++  ++G +G   + IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + + EV   DHL++ MDANARTG R
Sbjct:   12 CDVIGLQETRREGQGSIAH--DGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.880e-27
Identity = 63/139 (45.32%), Postives = 85/139 (61.15%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTGGR 420
            CD I +QETRR+G+ +I    DGYV   SG   G  GK G+ GVG+A++E++ +++G +G   + IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + + EV   DHL++ MDANARTG R
Sbjct:   12 CDVIGLQETRREGQGSIAH--DGYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.660e-27
Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:   10 AKYECDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTGGR 420
            A  +CD I +QETRR G+  I    DGYV+  SG   G   K G+ GVG+A++E++  ++G  G   + IS RL+KVR+        TF+VGYAPTETA          K  FW  L + + EV   DHL++ MDANARTG R
Sbjct:    8 AATDCDVIGLQETRRAGQGAITH--DGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRR 148          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.010e-26
Identity = 61/137 (44.53%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTG 414
            CD + +QE RRDG+ +I  P DGYV+  SG   G   K G+ GVG+A++E++  ++G +G   + IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + + EV   DHL++ MDANARTG
Sbjct:   59 CDVVGLQENRRDGQGSI--PHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTG 193          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.230e-26
Identity = 62/141 (43.97%), Postives = 84/141 (59.57%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTGGRGE 426
            CD I +QETRR+G+ +I    DGYV+  SG   G   K G+ GVG+A++E++  ++G +G   + IS RL+K R+        TF+VGYAPTET  T        K  FW  L + + EV   DHL++ MDANARTG R E
Sbjct:   12 CDVIELQETRREGQGSIAH--DGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGRRRE 150          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.600e-26
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTGGR 420
            CD I +QETRR+G+ +I    DGYV+  SG   G   K G+ GVG+A++E++  ++G +G   + IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + + EV   DHL++ MDANARTG R
Sbjct:   12 CDVIGLQETRREGQGSIAH--DGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5KL89_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL89_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.010e-26
Identity = 61/141 (43.26%), Postives = 83/141 (58.87%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTGGRGE 426
            CD I +Q+TRR G+ +     DGYV+  SG   G   K G+ GVG+A++E++  ++G +G   + IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + + EV   DHL++ MDANARTG R E
Sbjct:  141 CDVIGLQQTRRVGQGSTAH--DGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRE 279          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.510e-26
Identity = 62/139 (44.60%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAATCH------KSKFWKELRSTVAEVPDSDHLILAMDANARTGGR 420
            CD I +QETRR G+ +I    DGYV+  SG   G   K G+ GVG+A++E++  ++G +G   + IS RL+KVR+        TF+VGYAPTET  T        K  FW  L + + EV   DHL++ MDANARTG R
Sbjct:  209 CDVIGLQETRRAGQGSIAH--DGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 345          
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Match: A0A6H5KTK0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 7.330e-26
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   22 CDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTETAAT-----CH-KSKFWKELRSTVAEVPDSDHLILAMDANARTG 414
            CD I +QETRR+G+ +I    DGYV+  SG   G   K G+ GVG+A++E++  ++G +G   + IS RL+KVR+        TF+VGYAPTET  T      H K  FW  L + + EV   DHL++ MDANARTG
Sbjct:   12 CDVIGLQETRREGQGSIAH--DGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTNAGGDVHAKESFWTALDAVMREVHSHDHLVVPMDANARTG 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124336.1825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMM5_9PHAE7.760e-2844.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE2.500e-2744.60Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KQ63_9PHAE2.880e-2745.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP87_9PHAE4.660e-2744.06Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K6P8_9PHAE1.010e-2644.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT2_9PHAE1.230e-2643.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7A7_9PHAE2.600e-2644.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL89_9PHAE3.010e-2643.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3Q1_9PHAE5.510e-2644.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTK0_9PHAE7.330e-2645.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124336contigH-elongata_contig124336:52..480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score76.3
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog13616.ENSMODP00000016161
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BPUP@33208,3D6HY@33213,3JJKA@40674,48CXU@7711,4992I@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.2177064-CDS-H-elongata_contig124336:51..4801622929732.2177064-CDS-H-elongata_contig124336:51..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124336 52..480 +
1691679136.6159172-CDS-H-elongata_contig124336:51..4801691679136.6159172-CDS-H-elongata_contig124336:51..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124336 52..480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124336.1825.1prot_H-elongata_contig124336.1825.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124336 52..480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124336.1825.1

>prot_H-elongata_contig124336.1825.1 ID=prot_H-elongata_contig124336.1825.1|Name=mRNA_H-elongata_contig124336.1825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MFAAKYECDFIAIQETRRDGRATIQEPVDGYVVHCSGHCDGDGGKPGILG
VGLAVRESIARALGPDGIVPKQISARLLKVRVIFKHKAVTTFIVGYAPTE
TAATCHKSKFWKELRSTVAEVPDSDHLILAMDANARTGGRGE*
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mRNA from alignment at H-elongata_contig124336:52..480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124336.1825.1 ID=mRNA_H-elongata_contig124336.1825.1|Name=mRNA_H-elongata_contig124336.1825.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig124336:52..480+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCG CCGCGATGGAAGGGCAACCATCCAAGAACCAGTCGATGGTTATGTCGTGC ACTGCAGCGGTCATTGCGATGGTGATGGAGGTAAGCCCGGGATACTCGGA GTTGGTCTGGCTGTCAGGGAGTCTATCGCTCGCGCACTCGGCCCAGATGG CATTGTGCCGAAACAGATCAGTGCGCGGCTGCTGAAGGTGAGGGTGATTT TCAAACATAAAGCCGTCACAACCTTCATCGTGGGATACGCTCCCACTGAA ACAGCAGCCACCTGTCACAAGTCTAAGTTCTGGAAGGAACTTCGCAGCAC TGTTGCTGAGGTACCTGACAGCGACCACCTGATTTTGGCGATGGATGCTA ACGCCCGTACGGGAGGAAGGGGAGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig124336:52..480+

>mRNA_H-elongata_contig124336.1825.1 ID=mRNA_H-elongata_contig124336.1825.1|Name=mRNA_H-elongata_contig124336.1825.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig124336:52..480+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCG
CCGCGATGGAAGGGCAACCATCCAAGAACCAGTCGATGGTTATGTCGTGC
ACTGCAGCGGTCATTGCGATGGTGATGGAGGTAAGCCCGGGATACTCGGA
GTTGGTCTGGCTGTCAGGGAGTCTATCGCTCGCGCACTCGGCCCAGATGG
CATTGTGCCGAAACAGATCAGTGCGCGGCTGCTGAAGGTGAGGGTGATTT
TCAAACATAAAGCCGTCACAACCTTCATCGTGGGATACGCTCCCACTGAA
ACAGCAGCCACCTGTCACAAGTCTAAGTTCTGGAAGGAACTTCGCAGCAC
TGTTGCTGAGGTACCTGACAGCGACCACCTGATTTTGGCGATGGATGCTA
ACGCCCGTACGGGAGGAAGGGGAGAGTGAATGTTCGCTGCGAAGTACGAG
TGCGACTTCATCGCCATACAGGAGACTCGCCGCGATGGAAGGGCAACCAT
CCAAGAACCAGTCGATGGTTATGTCGTGCACTGCAGCGGTCATTGCGATG
GTGATGGAGGTAAGCCCGGGATACTCGGAGTTGGTCTGGCTGTCAGGGAG
TCTATCGCTCGCGCACTCGGCCCAGATGGCATTGTGCCGAAACAGATCAG
TGCGCGGCTGCTGAAGGTGAGGGTGATTTTCAAACATAAAGCCGTCACAA
CCTTCATCGTGGGATACGCTCCCACTGAAACAGCAGCCACCTGTCACAAG
TCTAAGTTCTGGAAGGAACTTCGCAGCACTGTTGCTGAGGTACCTGACAG
CGACCACCTGATTTTGGCGATGGATGCTAACGCCCGTACGGGAGGAAGGG
GAGAGTGA
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