mRNA_H-elongata_contig124100.1812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124100.1812.1
Unique NamemRNA_H-elongata_contig124100.1812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.490e-26
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 MYELDKEDTKAYLDLLDWWRVRCTDFPHLANVARRVLAIPATQAESERLFSCAGN 165
            MYE DKE  K YLD LDWWRVRC DFPHLAN+ARRVLAIPATQAESERLFSCAGN
Sbjct:  209 MYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGN 263          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.400e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1
Query:   70 TDFPHLANVARRVLAIPATQAESERLFSCAGN 165
            TDFPHLAN+ARRVLAIPATQA+SERLFSCAGN
Sbjct:  152 TDFPHLANLARRVLAIPATQAKSERLFSCAGN 183          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.700e-9
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   28 KAYLDLLDWWRVRCTDFPHLANVARRVLAIPATQAESERL 147
            K Y D LDWWR R  +FPHLA +ARRVLAIP++QA SER+
Sbjct:  510 KVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: A0A015I940_RHIIW (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015I940_RHIIW)

HSP 1 Score: 60.5 bits (145), Expect = 2.710e-9
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   46 LDWWRVRCTDFPHLANVARRVLAIPATQAESERLFSCAGN 165
            LDWWR+R  +FP LA +AR+ LAIPAT   SERLFS AGN
Sbjct:  662 LDWWRIRSQNFPKLAKLARKYLAIPATSVSSERLFSDAGN 701          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: U9UP26_RHIID (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9UP26_RHIID)

HSP 1 Score: 55.5 bits (132), Expect = 1.020e-8
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   46 LDWWRVRCTDFPHLANVARRVLAIPATQAESERLFSCAGN 165
            LDWW++   +FP LA +AR+ LAIPAT   SERLFS AGN
Sbjct:   16 LDWWQICFQNFPKLAKLARKYLAIPATSVSSERLFSNAGN 55          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.300e-8
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   46 LDWWRVRCTDFPHLANVARRVLAIPATQAESERLFSCAG 162
            L+WWRV+  ++P LA++ARRVL IPA QA+SER+FS AG
Sbjct:  481 LEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAG 519          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: UPI0011C102C8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C102C8)

HSP 1 Score: 56.6 bits (135), Expect = 5.230e-8
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   10 LDKEDTKAYLDLLDWWRVRCTDFPHLANVARRVLAIPATQAESERLFSCAGN 165
            L   +  A  + L+WWR+  T+FP LAN+A++ + IPAT A SER FS  GN
Sbjct:  210 LQSVEVDAEANPLEWWRLHQTNFPRLANLAKKYICIPATSAPSERAFSTGGN 261          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 55.1 bits (131), Expect = 7.050e-8
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   40 DLLDWWRVRCTDFPHLANVARRVLAIPATQAESERLFSCAGN 165
            +++ WW+     FP LA VAR +LAIPATQ  SERLFS AGN
Sbjct:  102 NVISWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGN 143          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 53.9 bits (128), Expect = 1.130e-7
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   40 DLLDWWRVRCTDFPHLANVARRVLAIPATQAESERLFSCAG 162
            D+ +WWR     FPHL+++AR++L IPAT   SER+FS AG
Sbjct:   67 DVFEWWRKNQEMFPHLSDIARKLLCIPATSVPSERIFSVAG 107          
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Match: A0A3B3T1Z0_9TELE (Uncharacterized protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3T1Z0_9TELE)

HSP 1 Score: 55.8 bits (133), Expect = 1.150e-7
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1
Query:   40 DLLDWWRVRCTDFPHLANVARRVLAIPATQAESERLFSCAG 162
            DLL WW+   +  P L+ +ARR+LAIPAT A SER FS AG
Sbjct:  371 DLLSWWKEHASTLPRLSQIARRILAIPATSAPSERAFSAAG 411          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124100.1812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE6.490e-2687.27Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE2.400e-1193.75Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KUY5_9PHAE2.700e-967.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A015I940_RHIIW2.710e-967.50Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rh... [more]
U9UP26_RHIID1.020e-862.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
A0A6H5JHP9_9PHAE1.300e-864.10Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI0011C102C85.230e-848.08zinc finger BED domain-containing protein 1-like n... [more]
UPI000EAB1B8F7.050e-859.52zinc finger BED domain-containing protein 1-like n... [more]
A0A1X7SR93_AMPQE1.130e-753.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A3B3T1Z0_9TELE1.150e-758.54Uncharacterized protein n=1 Tax=Paramormyrops king... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124100contigH-elongata_contig124100:1315..1479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.858444-CDS-H-elongata_contig124100:1314..14791622929730.858444-CDS-H-elongata_contig124100:1314..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124100 1315..1479 -
1691679136.1985116-CDS-H-elongata_contig124100:1314..14791691679136.1985116-CDS-H-elongata_contig124100:1314..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124100 1315..1479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124100.1812.1prot_H-elongata_contig124100.1812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124100 1315..1479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124100.1812.1

>prot_H-elongata_contig124100.1812.1 ID=prot_H-elongata_contig124100.1812.1|Name=mRNA_H-elongata_contig124100.1812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MYELDKEDTKAYLDLLDWWRVRCTDFPHLANVARRVLAIPATQAESERLF
SCAGN
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mRNA from alignment at H-elongata_contig124100:1315..1479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124100.1812.1 ID=mRNA_H-elongata_contig124100.1812.1|Name=mRNA_H-elongata_contig124100.1812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig124100:1315..1479- (Himanthalia elongata Himel1 dioecious)
ATGTACGAGTTAGACAAAGAAGACACAAAGGCGTACCTTGACCTCTTGGA CTGGTGGCGGGTGCGGTGCACAGACTTCCCGCACTTGGCCAACGTCGCCC GCCGTGTGCTGGCAATCCCCGCCACTCAGGCAGAGTCCGAGCGTCTGTTC TCCTGCGCTGGAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig124100:1315..1479-

>mRNA_H-elongata_contig124100.1812.1 ID=mRNA_H-elongata_contig124100.1812.1|Name=mRNA_H-elongata_contig124100.1812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig124100:1315..1479- (Himanthalia elongata Himel1 dioecious)
ATGTACGAGTTAGACAAAGAAGACACAAAGGCGTACCTTGACCTCTTGGA
CTGGTGGCGGGTGCGGTGCACAGACTTCCCGCACTTGGCCAACGTCGCCC
GCCGTGTGCTGGCAATCCCCGCCACTCAGGCAGAGTCCGAGCGTCTGTTC
TCCTGCGCTGGAAACATGTACGAGTTAGACAAAGAAGACACAAAGGCGTA
CCTTGACCTCTTGGACTGGTGGCGGGTGCGGTGCACAGACTTCCCGCACT
TGGCCAACGTCGCCCGCCGTGTGCTGGCAATCCCCGCCACTCAGGCAGAG
TCCGAGCGTCTGTTCTCCTGCGCTGGAAAC
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