mRNA_H-elongata_contig124019.1806.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124019.1806.1
Unique NamemRNA_H-elongata_contig124019.1806.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: A0A6H5JAW2_9PHAE (RCK N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW2_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.100e-39
Identity = 77/95 (81.05%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    4 DELTVLGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            D LT LGR AL+FLAATVA+VPACKK+NISPVLGFL  G +LGPSG SVIK++NELD  GELGI FLLFEQGLELSLDRLKALSK+AFGLGT QV
Sbjct:  168 DVLTTLGRDALMFLAATVAVVPACKKLNISPVLGFLATGAILGPSGISVIKNLNELDTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTAQV 262
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BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: A0A835ZEK7_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 8.540e-33
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    1 MDELTVLGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            +  L  LG  +LIFLAATV +VP  KK+N+SPVLGFLGAGL LGP GF +I+++ +L+  GELGI FLLFEQGLELSLDRLKAL K+AFGLGTLQV
Sbjct:    8 VTSLAALGADSLIFLAATVFLVPLSKKLNVSPVLGFLGAGLALGPHGFKLIRELRDLNALGELGITFLLFEQGLELSLDRLKALGKYAFGLGTLQV 103
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BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: A0A835ZF36_9STRA (K(+) efflux antiporter 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF36_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.490e-31
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:   19 LGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            LG  AL FLAATVAIVP  K+ N+SPVLGFL AGL+LGP G   IKD+ +L+  GELGI FLLFEQGLELSLDRLKAL K+AFGLGTLQV
Sbjct:  113 LGTDALKFLAATVAIVPIAKRFNLSPVLGFLAAGLILGPKGVGAIKDLRDLNALGELGITFLLFEQGLELSLDRLKALGKYAFGLGTLQV 202
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BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: A0A7S1UH40_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH40_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.230e-27
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 MDELTVLGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            +D L +LG   L+FLA TV ++P  K + IS VLGFL  G +LGP GF + +D+ +LD  GE+GI+FLLFEQGLEL+L+RL++L+KFAFGLG LQV
Sbjct:   91 VDGLRILGNDGLVFLATTVLVIPLTKYLRISNVLGFLAMGFVLGPRGFGIFRDLQDLDVLGEIGILFLLFEQGLELTLERLRSLAKFAFGLGLLQV 186
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BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: A0A7S2UWU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWU9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.350e-27
Identity = 54/93 (58.06%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   10 LTVLGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            L+ +G   L+F+A  VA+VP    ++ISP+LGFLGAGL LGP G +VI D+++L+   ++GI+FLLFEQGLEL++ RLK+L+KFAFGLG LQV
Sbjct:  155 LSAMGFDGLVFMATAVAVVPIFTALDISPILGFLGAGLALGPVGLNVIADIHDLEELADVGILFLLFEQGLELTIPRLKSLAKFAFGLGLLQV 247
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BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: A0A7R9U8T7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8T7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.240e-27
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:   19 LGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            LG   LIFLAATV +VP  K V +S VLGFL AG LLGP+G  V KD+N+L++  E+GI+FLLFEQGLEL+LDRL+ L+K+AFGLG LQ+
Sbjct:   73 LGSDGLIFLAATVIVVPLTKSVKVSSVLGFLFAGFLLGPAGIGVFKDLNDLESLSEIGILFLLFEQGLELTLDRLRNLAKYAFGLGFLQM 162
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BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: A0A383WCY8_TETOB (RCK N-terminal domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WCY8_TETOB)

HSP 1 Score: 107 bits (266), Expect = 6.230e-25
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 MDELTVLGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            M  +  LG   L FLA TVA+VP CK + +SPVLGFL AG+ L  +G  ++KD+ +++   ELG++FLL+EQGLELSLDRLKALSK+AFG+G+LQV
Sbjct:  120 MTGIIPLGYDFLTFLATTVAVVPTCKFLKVSPVLGFLAAGVALEQAG--MLKDLKDMETLSELGVLFLLYEQGLELSLDRLKALSKYAFGMGSLQV 213
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BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: M2VZM4_GALSU (Monovalent cation:H+ antiporter-2, CPA2 family isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZM4_GALSU)

HSP 1 Score: 107 bits (266), Expect = 6.360e-25
Identity = 50/82 (60.98%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:   43 LAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            LAATVAIVP  K++N+SPVLGFL +G++LGP GF ++KDV ++ +  + G++FLLFE GLELS+DRL+ L K+AFGLG+LQ+
Sbjct:  102 LAATVAIVPVFKRINLSPVLGFLLSGVILGPHGFRLVKDVEDIKHLADFGVLFLLFEMGLELSIDRLRKLRKYAFGLGSLQM 183
[Close]
BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: A0A250WTP1_9CHLO (RCK N-terminal domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WTP1_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 1.150e-24
Identity = 55/95 (57.89%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    4 DELTVLGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            + LT+LG+  L FL +TVA++P  K + ISPVLGFL +G++L   G +  KDV +L+   E+G++FLLFE GLELS+DRLKAL+K+AFGLGTLQV
Sbjct:   64 EGLTLLGQDVLYFLGSTVAVIPLFKYLKISPVLGFLASGIILHQLGLT--KDVEDLERLSEMGVLFLLFEMGLELSIDRLKALAKYAFGLGTLQV 156
[Close]
BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Match: D8LEI4_ECTSI (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI4_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.580e-24
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   94 PVLGFLGAGLLLGPSGFSVIKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV 288
            PVLGFL  G +LGPSG SVIKD+NELD  GELGI FLLFEQGLELSLDRLKALSK+AFGLGT QV
Sbjct:  409 PVLGFLATGAILGPSGISVIKDLNELDTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTAQV 473
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124019.1806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAW2_9PHAE4.100e-3981.05RCK N-terminal domain-containing protein n=1 Tax=E... [more]
A0A835ZEK7_9STRA8.540e-3369.79Sodium/hydrogen exchanger family-domain-containing... [more]
A0A835ZF36_9STRA1.490e-3174.44K(+) efflux antiporter 3 n=1 Tax=Tribonema minus T... [more]
A0A7S1UH40_9STRA2.230e-2758.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2UWU9_9STRA2.350e-2758.06Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7R9U8T7_9STRA4.240e-2764.44Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A383WCY8_TETOB6.230e-2558.33RCK N-terminal domain-containing protein n=2 Tax=T... [more]
M2VZM4_GALSU6.360e-2560.98Monovalent cation:H+ antiporter-2, CPA2 family iso... [more]
A0A250WTP1_9CHLO1.150e-2457.89RCK N-terminal domain-containing protein n=1 Tax=C... [more]
D8LEI4_ECTSI1.580e-2483.08Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124019contigH-elongata_contig124019:684..971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue4.7e-21
Seed eggNOG ortholog130081.XP_005705316.1
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009643,GO:0009657,GO:0009658,GO:0009893,GO:0009987,GO:0010109,GO:0015075,GO:0015318,GO:0016020,GO:0016043,GO:0019222,GO:0022857,GO:0022890,GO:0031323,GO:0031325,GO:0031976,GO:0031984,GO:0034220,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0055035,GO:0055085,GO:0065007,GO:0071840,GO:0098655,GO:1905157
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.139259-CDS-H-elongata_contig124019:683..9711622929730.139259-CDS-H-elongata_contig124019:683..971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124019 684..971 -
1691679136.079366-CDS-H-elongata_contig124019:683..9711691679136.079366-CDS-H-elongata_contig124019:683..971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124019 684..971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124019.1806.1prot_H-elongata_contig124019.1806.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124019 684..971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124019.1806.1

>prot_H-elongata_contig124019.1806.1 ID=prot_H-elongata_contig124019.1806.1|Name=mRNA_H-elongata_contig124019.1806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MDELTVLGRYALIFLAATVAIVPACKKVNISPVLGFLGAGLLLGPSGFSV
IKDVNELDNFGELGIIFLLFEQGLELSLDRLKALSKFAFGLGTLQV
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mRNA from alignment at H-elongata_contig124019:684..971-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124019.1806.1 ID=mRNA_H-elongata_contig124019.1806.1|Name=mRNA_H-elongata_contig124019.1806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig124019:684..971- (Himanthalia elongata Himel1 dioecious)
ATGGACGAGCTAACAGTCCTTGGGAGGTACGCTCTCATATTCTTAGCCGC
CACCGTTGCGATTGTTCCAGCATGCAAGAAGGTGAACATTAGTCCGGTCT
TGGGCTTCCTAGGCGCAGGTTTACTGTTGGGGCCTTCGGGCTTCAGCGTC
ATCAAGGACGTGAACGAGCTCGACAATTTCGGAGAGCTCGGCATCATCTT
CTTGCTGTTCGAGCAGGGGCTAGAGCTGAGCCTGGATAGATTAAAAGCGC
TGAGCAAGTTCGCCTTTGGGCTTGGAACACTGCAGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig124019:684..971-

>mRNA_H-elongata_contig124019.1806.1 ID=mRNA_H-elongata_contig124019.1806.1|Name=mRNA_H-elongata_contig124019.1806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig124019:684..971- (Himanthalia elongata Himel1 dioecious)
ATGGACGAGCTAACAGTCCTTGGGAGGTACGCTCTCATATTCTTAGCCGC
CACCGTTGCGATTGTTCCAGCATGCAAGAAGGTGAACATTAGTCCGGTCT
TGGGCTTCCTAGGCGCAGGTTTACTGTTGGGGCCTTCGGGCTTCAGCGTC
ATCAAGGACGTGAACGAGCTCGACAATTTCGGAGAGCTCGGCATCATCTT
CTTGCTGTTCGAGCAGGGGCTAGAGCTGAGCCTGGATAGATTAAAAGCGC
TGAGCAAGTTCGCCTTTGGGCTTGGAACACTGCAGGTCATGGACGAGCTA
ACAGTCCTTGGGAGGTACGCTCTCATATTCTTAGCCGCCACCGTTGCGAT
TGTTCCAGCATGCAAGAAGGTGAACATTAGTCCGGTCTTGGGCTTCCTAG
GCGCAGGTTTACTGTTGGGGCCTTCGGGCTTCAGCGTCATCAAGGACGTG
AACGAGCTCGACAATTTCGGAGAGCTCGGCATCATCTTCTTGCTGTTCGA
GCAGGGGCTAGAGCTGAGCCTGGATAGATTAAAAGCGCTGAGCAAGTTCG
CCTTTGGGCTTGGAACACTGCAGGTC
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