mRNA_H-elongata_contig124018.1805.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI) HSP 1 Score: 226 bits (577), Expect = 1.120e-69 Identity = 114/126 (90.48%), Postives = 117/126 (92.86%), Query Frame = 1
Query: 19 REILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
REILRTADPFLQMKKEEPDRYLRLEHWLQKGA IDPRDLYP GSSKEKRRAEIANMLIPE VVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKD+EE+PPRK+AGQIKFG
Sbjct: 94 REILRTADPFLQMKKEEPDRYLRLEHWLQKGAAIDPRDLYPAGSSKEKRRAEIANMLIPEV-----SVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFG 214
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: A0A835ZIM7_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIM7_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.620e-42 Identity = 81/136 (59.56%), Postives = 104/136 (76.47%), Query Frame = 1
Query: 13 LFREILRTADPFLQMKKEEPDRYLRLEHWLQK-----GATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLP---RGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
L RE+LRTA+PF ++K E P+R+L+LEHW+++ G ++DPRDLY G+S+EKRRAE+A+ ++ EA VV PSRLLAL+ QALKWQQ+QG LP G K+DLFRG RA ++D EERPPRKLAGQIKFG
Sbjct: 92 LARELLRTAEPFAKLKVENPERFLKLEHWVKRACSGGGTSLDPRDLYAAGNSREKRRAEVADAVLAEA-----SVVAPSRLLALLGQALKWQQLQGQLPPRGTGGKYDLFRGAQRARRRDEEERPPRKLAGQIKFG 222
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: K8YWD5_NANGC (WD40 repeat-containing protein SMU1 (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWD5_NANGC) HSP 1 Score: 127 bits (318), Expect = 1.340e-31 Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 1
Query: 13 LFREILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
L RE+LRT +P +K ++PDRY RLE +L + D ++LY G +KE+RR EIA+ L E VVPPSRLLAL+ QAL++QQ+QG LP+ +++DLFRG AR++ KD ERPP+K AGQIKFG
Sbjct: 151 LAREMLRTTEPLQLLKTQDPDRYFRLETFLNR-KIHDAQELYAYGLNKERRRQEIADSLAVEV-----SVVPPSRLLALLQQALRYQQLQGNLPKDRRYDLFRGSARSAGKDEAERPPKKQAGQIKFG 272
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: T1JMW6_STRMM (WD40 repeat-containing protein SMU1 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JMW6_STRMM) HSP 1 Score: 124 bits (310), Expect = 1.150e-30 Identity = 71/126 (56.35%), Postives = 87/126 (69.05%), Query Frame = 1
Query: 19 REILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
R +LR DP + MK++EP+RY+ LE+ L + + DPR+ YP GSSKE+RRA IA+ L E VVPPSRLLAL+ QALKWQQ QGLLP G DLFRG A A K+ EE+ P L+ QIKFG
Sbjct: 94 RSLLRQTDPMVMMKQQEPERYVHLENLLAR-SYFDPREAYPDGSSKERRRAAIAHALSGEV-----SVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKA-AMKEQEEEKYPTMLSRQIKFG 212
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: E9GJA5_DAPPU (WD40 repeat-containing protein SMU1 n=4 Tax=Daphnia TaxID=6668 RepID=E9GJA5_DAPPU) HSP 1 Score: 123 bits (309), Expect = 1.590e-30 Identity = 72/126 (57.14%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 19 REILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
R +LR DP MK++EPDRYL LE+ L + + D R+ YP GSSKEKRRA IA L E VVPPSRLLAL+ Q+LKWQQ QGLLP G DLFRG A A K+ EE+PP +L IKFG
Sbjct: 94 RSLLRQTDPMALMKQQEPDRYLNLENLLAR-SYFDTREAYPEGSSKEKRRAAIAQALSGEV-----SVVPPSRLLALLGQSLKWQQHQGLLPPGTSIDLFRGKA-AIKEQEEEQPPTQLTKHIKFG 212
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: A0A1V9XY74_9ACAR (WD40 repeat-containing protein SMU1 n=2 Tax=Dermanyssoidea TaxID=41438 RepID=A0A1V9XY74_9ACAR) HSP 1 Score: 123 bits (308), Expect = 2.170e-30 Identity = 74/126 (58.73%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 19 REILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
R +LR DP L+MK +EP+RYL LE L K + DP + YP GSSKEKRRA IA L E VVPPSRLLAL+ QALKWQQ QGLLP G + DLFRG A A K+ EE+ P LA IKFG
Sbjct: 94 RSLLRQTDPMLKMKADEPERYLGLESLLNK-SFFDPLEAYPAGSSKEKRRAAIAAALSGEV-----SVVPPSRLLALLGQALKWQQHQGLLPPGSQIDLFRGKA-AIKEQEEEKYPTMLAKTIKFG 212
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: A0A0K2SXN6_LEPSM (WD40 repeat-containing protein SMU1 (Fragment) n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2SXN6_LEPSM) HSP 1 Score: 120 bits (300), Expect = 3.040e-30 Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 19 REILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
R +LR DP + MK+ +PDRY+ LE+ L + + DPR+ YP GS+KE+RRA IA L E VVPPSRLLAL+ QALKWQQ QGLLP G + DLFRG A A ++ EE+ P ++ QIKFG
Sbjct: 94 RSLLRQTDPMIVMKQNDPDRYVHLENLLAR-SYFDPREAYPDGSTKERRRAAIAQSLSGEV-----SVVPPSRLLALLGQALKWQQHQGLLPPGTQIDLFRGKA-AMREQEEEKFPTMMSKQIKFG 212
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: UPI000C75B930 (WD40 repeat-containing protein SMU1-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75B930) HSP 1 Score: 122 bits (307), Expect = 3.050e-30 Identity = 70/126 (55.56%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 19 REILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
R +LR DP + MK+ EP+RYL LE+ L + + DPR+ YP G SKEKRRA IA L E VVPPSRLLAL+ QALKWQQ QGLLP G + DLFRG A A ++ +E+ P +L+ QIKFG
Sbjct: 94 RSLLRQTDPMIVMKQSEPERYLHLENLLAR-SYFDPREAYPEGGSKEKRRAAIAQSLAGEV-----SVVPPSRLLALLGQALKWQQHQGLLPPGTQIDLFRGKA-AMREQEDEKYPTQLSKQIKFG 212
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: UPI0003F0D5E3 (WD40 repeat-containing protein SMU1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D5E3) HSP 1 Score: 121 bits (304), Expect = 5.570e-30 Identity = 69/126 (54.76%), Postives = 87/126 (69.05%), Query Frame = 1
Query: 19 REILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
R +LR DP + +K+++PDRY+ LE+ L + + DPR+ YP GSSKE+RRA IA+ L E VVPPSRLLAL+ QALKWQQ QGLLP G DLFRG A A K + EE+ P +L+ IKFG
Sbjct: 94 RSLLRQTDPMIMLKQQQPDRYVHLENLLAR-SYFDPREAYPDGSSKERRRAAIAHALSGEV-----SVVPPSRLLALLGQALKWQQHQGLLPPGTNIDLFRGKA-AVKDEDEEKYPTQLSKTIKFG 212
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Match: A0A8D8LCD4_9HEMI (WD repeat-containing protein 55 homolog n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8LCD4_9HEMI) HSP 1 Score: 122 bits (305), Expect = 5.700e-30 Identity = 70/126 (55.56%), Postives = 85/126 (67.46%), Query Frame = 1
Query: 19 REILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSSKEKRRAEIANMLIPEARPKHTDVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDLEERPPRKLAGQIKFG 396
R +LR DP + MK+ EP+RY+ LE+ L + + DPR+ YP G SKEKRR IA+ L+ E VVPPSRLLAL+ QALKWQQ QGLLP G DLFRG A A K EE+ P +L+ QIKFG
Sbjct: 94 RSLLRQTDPMIFMKQHEPERYIHLENLLAR-SYFDPREAYPEGQSKEKRRNAIAHALVGEV-----SVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKA-AMKDQEEEKYPTQLSKQIKFG 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124018.1805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124018.1805.1 >prot_H-elongata_contig124018.1805.1 ID=prot_H-elongata_contig124018.1805.1|Name=mRNA_H-elongata_contig124018.1805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MFLFLFREILRTADPFLQMKKEEPDRYLRLEHWLQKGATIDPRDLYPTGSback to top mRNA from alignment at H-elongata_contig124018:543..1711- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124018.1805.1 ID=mRNA_H-elongata_contig124018.1805.1|Name=mRNA_H-elongata_contig124018.1805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-elongata_contig124018:543..1711- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124018:543..1711- >mRNA_H-elongata_contig124018.1805.1 ID=mRNA_H-elongata_contig124018.1805.1|Name=mRNA_H-elongata_contig124018.1805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig124018:543..1711- (Himanthalia elongata Himel1 dioecious)back to top |