mRNA_H-elongata_contig123993.1804.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A6H5K275_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K275_9PHAE) HSP 1 Score: 129 bits (323), Expect = 9.190e-36 Identity = 53/86 (61.63%), Postives = 75/86 (87.21%), Query Frame = 1
Query: 1 QRVRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
Q + +N+D++ +A+H DK+VV+KFYD+FCRACDEIRPR+E+LS+S ++A+F+++EFSG+KDLCKQLGI RLPTVQ+Y G +GR
Sbjct: 80 QAIDSNDDYVSAMAQHEDKLVVIKFYDQFCRACDEIRPRYEDLSRSQPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGR 165
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.010e-19 Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 52 DKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADG 255
DKVV +KFY +CRAC I PRFE L++ G +EA FYEIEFS +KDLC++L IK+LP VQ + GA+G
Sbjct: 131 DKVVAIKFYAGWCRACKTIAPRFERLAKEFG-EEAAFYEIEFSANKDLCRRLDIKKLPCVQFFRGAEG 197
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN) HSP 1 Score: 83.6 bits (205), Expect = 3.940e-19 Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 49 NDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADG 255
+D++V VKFY +CRAC I PRFE L++ DE F+EIEF+ +K+LC++L IK+LP VQ + G+ G
Sbjct: 19 DDRLVAVKFYASWCRACKSIAPRFERLAKEFAGDEVQFFEIEFAANKELCRRLNIKKLPCVQYFRGSLG 87
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S1T5P7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T5P7_9RHOD) HSP 1 Score: 75.5 bits (184), Expect = 6.720e-15 Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 1 QRVRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
+R+ + EDF+E+L E + +VV+KF+ CRAC + P+F + +Q E +F EI+++ K+LC +LG+ LP VQ Y+G GR
Sbjct: 88 RRLNSTEDFLEMLEEGRNTLVVIKFFASSCRACKAVAPKFVKAAQEF--PEFLFCEIDYAELKELCWRLGVLHLPHVQFYSGERGR 171
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S2GHN9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GHN9_9EUKA) HSP 1 Score: 67.0 bits (162), Expect = 1.650e-11 Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 40 AEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
A ++ V +K Y +CRAC + P++E +++ FYEI F +K LCK LGIK LP +++ AG+ G+
Sbjct: 81 AAREERTVCIKIYATWCRACKAMGPKYERIAKDPEYSHVEFYEIAFDDNKALCKSLGIKVLPVIEVVAGSKGK 153
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A0K9NUL0_ZOSMR (Putative Thioredoxin n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NUL0_ZOSMR) HSP 1 Score: 66.6 bits (161), Expect = 1.940e-11 Identity = 30/84 (35.71%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 7 VRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
V + E+F++VL E NDK+VVV+FY +C +C + P+ ++++ + +F ++ F +K +CK+L ++ LP Y GADG+
Sbjct: 80 VHSIEEFLQVLNEANDKLVVVEFYGTWCGSCRALFPKLCKIAEE--HPDIVFAKVNFDENKPMCKRLNVRVLPFFHFYRGADGQ 161
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A8J5X1A3_DIALT (Thioredoxin domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X1A3_DIALT) HSP 1 Score: 64.7 bits (156), Expect = 3.240e-11 Identity = 27/66 (40.91%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 49 NDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAG 246
++++VVVK+Y +CRAC + P+ E+++++ + FYE+EF +K LCK+LGIK LP ++++ G
Sbjct: 26 DEQLVVVKYYASWCRACKALGPKVEKIARNHPN--VRFYELEFEANKALCKELGIKVLPWIEIFKG 89
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: UPI001CC81DA8 (thioredoxin-like 2, chloroplastic n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC81DA8) HSP 1 Score: 65.1 bits (157), Expect = 8.770e-11 Identity = 28/84 (33.33%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 7 VRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
+ + E+F+ VL+E DK+VVV+FY +C +C + P+ + ++ + +F ++ F +K +C+ L +K LP Y GADG+
Sbjct: 89 IHSTEEFLRVLSEAGDKLVVVEFYGTWCASCRALFPKLCKTAEE--HPDILFLKVNFDENKPMCRSLNVKVLPYFHFYRGADGQ 170
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA) HSP 1 Score: 63.2 bits (152), Expect = 2.650e-10 Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 40 AEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
A ++VVV+KF+ +CRAC + P+F ++ E F+EI F +K LCK LGIK LP +++ G+ G+
Sbjct: 71 ATRENRVVVIKFFASWCRACKAMSPKFTRIADDWPDVE--FHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGK 141
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S3X6W1_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3X6W1_9SPIT) HSP 1 Score: 63.9 bits (154), Expect = 3.190e-10 Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 1 QRVRTNEDFIEVLAEHNDK-VVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAG 246
Q +R ED L + DK +VVVKFY ++C++C I+PRFE ++ + S+ FYE++++ K C++ ++ +P V +Y G
Sbjct: 142 QPIRCVEDLEAALKKAGDKRLVVVKFYARWCKSCKAIKPRFERVATKL-SNSCDFYEVDYAAHKAFCERCHVRFMPCVHIYKG 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123993.1804.1 >prot_H-elongata_contig123993.1804.1 ID=prot_H-elongata_contig123993.1804.1|Name=mRNA_H-elongata_contig123993.1804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp QRVRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDback to top mRNA from alignment at H-elongata_contig123993:696..1940+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123993.1804.1 ID=mRNA_H-elongata_contig123993.1804.1|Name=mRNA_H-elongata_contig123993.1804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1245bp|location=Sequence derived from alignment at H-elongata_contig123993:696..1940+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123993:696..1940+ >mRNA_H-elongata_contig123993.1804.1 ID=mRNA_H-elongata_contig123993.1804.1|Name=mRNA_H-elongata_contig123993.1804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig123993:696..1940+ (Himanthalia elongata Himel1 dioecious)back to top |