mRNA_H-elongata_contig123993.1804.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123993.1804.1
Unique NamemRNA_H-elongata_contig123993.1804.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A6H5K275_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K275_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 9.190e-36
Identity = 53/86 (61.63%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 QRVRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
            Q + +N+D++  +A+H DK+VV+KFYD+FCRACDEIRPR+E+LS+S   ++A+F+++EFSG+KDLCKQLGI RLPTVQ+Y G +GR
Sbjct:   80 QAIDSNDDYVSAMAQHEDKLVVIKFYDQFCRACDEIRPRYEDLSRSQPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGR 165          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.010e-19
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   52 DKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADG 255
            DKVV +KFY  +CRAC  I PRFE L++  G +EA FYEIEFS +KDLC++L IK+LP VQ + GA+G
Sbjct:  131 DKVVAIKFYAGWCRACKTIAPRFERLAKEFG-EEAAFYEIEFSANKDLCRRLDIKKLPCVQFFRGAEG 197          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN)

HSP 1 Score: 83.6 bits (205), Expect = 3.940e-19
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   49 NDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADG 255
            +D++V VKFY  +CRAC  I PRFE L++    DE  F+EIEF+ +K+LC++L IK+LP VQ + G+ G
Sbjct:   19 DDRLVAVKFYASWCRACKSIAPRFERLAKEFAGDEVQFFEIEFAANKELCRRLNIKKLPCVQYFRGSLG 87          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S1T5P7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T5P7_9RHOD)

HSP 1 Score: 75.5 bits (184), Expect = 6.720e-15
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 QRVRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
            +R+ + EDF+E+L E  + +VV+KF+   CRAC  + P+F + +Q     E +F EI+++  K+LC +LG+  LP VQ Y+G  GR
Sbjct:   88 RRLNSTEDFLEMLEEGRNTLVVIKFFASSCRACKAVAPKFVKAAQEF--PEFLFCEIDYAELKELCWRLGVLHLPHVQFYSGERGR 171          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S2GHN9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GHN9_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.650e-11
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   40 AEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
            A   ++ V +K Y  +CRAC  + P++E +++        FYEI F  +K LCK LGIK LP +++ AG+ G+
Sbjct:   81 AAREERTVCIKIYATWCRACKAMGPKYERIAKDPEYSHVEFYEIAFDDNKALCKSLGIKVLPVIEVVAGSKGK 153          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A0K9NUL0_ZOSMR (Putative Thioredoxin n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NUL0_ZOSMR)

HSP 1 Score: 66.6 bits (161), Expect = 1.940e-11
Identity = 30/84 (35.71%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    7 VRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
            V + E+F++VL E NDK+VVV+FY  +C +C  + P+  ++++     + +F ++ F  +K +CK+L ++ LP    Y GADG+
Sbjct:   80 VHSIEEFLQVLNEANDKLVVVEFYGTWCGSCRALFPKLCKIAEE--HPDIVFAKVNFDENKPMCKRLNVRVLPFFHFYRGADGQ 161          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A8J5X1A3_DIALT (Thioredoxin domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X1A3_DIALT)

HSP 1 Score: 64.7 bits (156), Expect = 3.240e-11
Identity = 27/66 (40.91%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   49 NDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAG 246
            ++++VVVK+Y  +CRAC  + P+ E+++++  +    FYE+EF  +K LCK+LGIK LP ++++ G
Sbjct:   26 DEQLVVVKYYASWCRACKALGPKVEKIARNHPN--VRFYELEFEANKALCKELGIKVLPWIEIFKG 89          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: UPI001CC81DA8 (thioredoxin-like 2, chloroplastic n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC81DA8)

HSP 1 Score: 65.1 bits (157), Expect = 8.770e-11
Identity = 28/84 (33.33%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 VRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
            + + E+F+ VL+E  DK+VVV+FY  +C +C  + P+  + ++     + +F ++ F  +K +C+ L +K LP    Y GADG+
Sbjct:   89 IHSTEEFLRVLSEAGDKLVVVEFYGTWCASCRALFPKLCKTAEE--HPDILFLKVNFDENKPMCRSLNVKVLPYFHFYRGADGQ 170          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 2.650e-10
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   40 AEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR 258
            A   ++VVV+KF+  +CRAC  + P+F  ++      E  F+EI F  +K LCK LGIK LP +++  G+ G+
Sbjct:   71 ATRENRVVVIKFFASWCRACKAMSPKFTRIADDWPDVE--FHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGK 141          
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Match: A0A7S3X6W1_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3X6W1_9SPIT)

HSP 1 Score: 63.9 bits (154), Expect = 3.190e-10
Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 QRVRTNEDFIEVLAEHNDK-VVVVKFYDKFCRACDEIRPRFEELSQSVGSDEAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAG 246
            Q +R  ED    L +  DK +VVVKFY ++C++C  I+PRFE ++  + S+   FYE++++  K  C++  ++ +P V +Y G
Sbjct:  142 QPIRCVEDLEAALKKAGDKRLVVVKFYARWCKSCKAIKPRFERVATKL-SNSCDFYEVDYAAHKAFCERCHVRFMPCVHIYKG 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123993.1804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K275_9PHAE9.190e-3661.63Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S4A7N2_9STRA1.010e-1960.29Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YB20_AURAN3.940e-1950.72Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7S1T5P7_9RHOD6.720e-1540.70Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2GHN9_9EUKA1.650e-1138.36Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0K9NUL0_ZOSMR1.940e-1135.71Putative Thioredoxin n=1 Tax=Zostera marina TaxID=... [more]
A0A8J5X1A3_DIALT3.240e-1140.91Thioredoxin domain-containing protein n=1 Tax=Diac... [more]
UPI001CC81DA88.770e-1133.33thioredoxin-like 2, chloroplastic n=1 Tax=Telopea ... [more]
A0A7S3ATR9_9EUKA2.650e-1039.73Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S3X6W1_9SPIT3.190e-1036.14Hypothetical protein (Fragment) n=2 Tax=Choreotric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123993contigH-elongata_contig123993:696..1940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D8LIL6
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009593,GO:0009941,GO:0010109,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019222,GO:0031090,GO:0031323,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051775,GO:0051776,GO:0055114,GO:0065007
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionthioredoxin-like protein
Ec32 orthologEc-11_004310.1
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.0483305-CDS-H-elongata_contig123993:695..8691622929730.0483305-CDS-H-elongata_contig123993:695..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123993 696..869 +
1691679136.031262-CDS-H-elongata_contig123993:695..8691691679136.031262-CDS-H-elongata_contig123993:695..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123993 696..869 +
1622929730.0631592-CDS-H-elongata_contig123993:1853..19401622929730.0631592-CDS-H-elongata_contig123993:1853..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123993 1854..1940 +
1691679136.0428042-CDS-H-elongata_contig123993:1853..19401691679136.0428042-CDS-H-elongata_contig123993:1853..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123993 1854..1940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123993.1804.1prot_H-elongata_contig123993.1804.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123993 696..1940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123993.1804.1

>prot_H-elongata_contig123993.1804.1 ID=prot_H-elongata_contig123993.1804.1|Name=mRNA_H-elongata_contig123993.1804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
QRVRTNEDFIEVLAEHNDKVVVVKFYDKFCRACDEIRPRFEELSQSVGSD
EAMFYEIEFSGSKDLCKQLGIKRLPTVQMYAGADGR*
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mRNA from alignment at H-elongata_contig123993:696..1940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123993.1804.1 ID=mRNA_H-elongata_contig123993.1804.1|Name=mRNA_H-elongata_contig123993.1804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1245bp|location=Sequence derived from alignment at H-elongata_contig123993:696..1940+ (Himanthalia elongata Himel1 dioecious)
CAGCGTGTGCGAACGAACGAAGACTTCATCGAGGTGCTGGCGGAGCACAA CGACAAGGTGGTAGTTGTTAAATTCTACGACAAGTTCTGCCGTGCGTGTG ACGAGATCAGGCCCCGATTTGAGGAACTCTCGCAATCGGTGGGGAGCGAC GAGGCCATGTTCTACGAGATCGAGGTTCGTTGATTTTTTACATATTTATT TTCGTAAAAAAAAAAACGTTTAAAATTAATACAACGGAATAACGGTTGCC TGAGAACAGTTGTGTTACTATCATAGTTAGTATCTTGTAGCTACGTAAAG AAGTGGAATGCAGAGTTTAGCTTAACGAGCTGGCGTTCGTAGATTGTTAC TAAGCGGGAGATGTGGAAGCGTTAATCCTGCTCGCCAAGCAACGATCGAA ATACTGGCGATCATAATTCGTCGTCGTGAGAATAGATATTTTAGATATGA CGTGCGTATGCACTACAAAGTGCTGTGACAAACATGAAACATGGGTGGAT ATGGGTGGGGGGATGCAGGCCGATGTTTCGGATCGGTCGAAAATTCCCTC ATCCTTCATCTTCTAATATTTTTAAGTATTGTTACCATTGTTTATGCTTA TCCCTATTGCTCCTGCCCATTCCTTATTGTTACCATTGTTTATGCTTACC CCTGCTTATTCATATTGCCCTTGCTCATTCCTGCTTTCTGATAGTTGGTT CCTTGGATTGCACCTATGGTGCATGAAGATGTGGATGTTCGGAGAGTTAG AATGAGCCTAAAGTCTTTTAAAATAATAATAACCAAAGCTGCCGAAGCGT TTCCCACCTCTGTGTTGCCACAGCAGGAAAACGTGTCGCACCCCCTGTAA TGTATAGTCCCCCTGCTCTTGGACATAAAAGTCCGTTGAGAGGAGAACCC CGAACATCAGTTCGAGGATTTAATCCTTTACCTTCAAGTTTTCATTAGCG CTTCAGTATTCATTATTAATAGCTTGGGTGAAGCGACTCGGGTTCCATGA TTTTTTGCGGGACAGGCGGTGGGGAAGGGAGCGTGCATTAGATTTTCATT AAATTATTAGATCTATTCTGAACGAGCCTTGTCTTCGACTGAGCTCAGGA GGGGGATAATGTCTCAACAACCCCCCCCCCTCCCATAACTTTCTCGTGAC CGTTGCAGTTTTCAGGCTCAAAGGACCTGTGCAAGCAGCTCGGCATCAAG CGGCTCCCGACCGTCCAGATGTACGCGGGCGCGGACGGGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig123993:696..1940+

>mRNA_H-elongata_contig123993.1804.1 ID=mRNA_H-elongata_contig123993.1804.1|Name=mRNA_H-elongata_contig123993.1804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig123993:696..1940+ (Himanthalia elongata Himel1 dioecious)
CAGCGTGTGCGAACGAACGAAGACTTCATCGAGGTGCTGGCGGAGCACAA
CGACAAGGTGGTAGTTGTTAAATTCTACGACAAGTTCTGCCGTGCGTGTG
ACGAGATCAGGCCCCGATTTGAGGAACTCTCGCAATCGGTGGGGAGCGAC
GAGGCCATGTTCTACGAGATCGAGCAGCGTGTGCGAACGAACGAAGACTT
CATCGAGGTGCTGGCGGAGCACAACGACAAGGTGGTAGTTGTTAAATTCT
ACGACAAGTTCTGCCGTGCGTGTGACGAGATCAGGCCCCGATTTGAGGAA
CTCTCGCAATCGGTGGGGAGCGACGAGGCCATGTTCTACGAGATCGAGTT
TTCAGGCTCAAAGGACCTGTGCAAGCAGCTCGGCATCAAGCGGCTCCCGA
CCGTCCAGATGTACGCGGGCGCGGACGGGAGGTAATTTTCAGGCTCAAAG
GACCTGTGCAAGCAGCTCGGCATCAAGCGGCTCCCGACCGTCCAGATGTA
CGCGGGCGCGGACGGGAGGTAA
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