mRNA_H-elongata_contig123873.1796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123873.1796.1
Unique NamemRNA_H-elongata_contig123873.1796.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.840e-35
Identity = 84/205 (40.98%), Postives = 117/205 (57.07%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPE-GLKIGVIRTDGGGKWHGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVALLRGVMEGKSDR-----LWVETIAYACDLWNRCTSSSLDSG-TSPYELWYGRRPTFDNIPPF 594
            C+ CS S+ +   + KST+ RA  +  RLF++L G     S+G N + ++  DD TR+ +V FL+HKSDA  A    + DY A     ++ V RTDGGG++ GQF  + R+ GIK E TPP  P YNG+ ERALGLL D+ +A      E   D      LW E I+ AC   N CT+++ + G  SP EL++G  P   +  PF
Sbjct:  169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 9.020e-34
Identity = 84/237 (35.44%), Postives = 126/237 (53.16%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 672
            C+ CS ++     +P  T  RA ++  R F++LSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G    +S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P    C  LG
Sbjct:  341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPTAQKCFYLG 570          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.280e-33
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 672
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  708 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 937          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.290e-33
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 672
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  543 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 772          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.290e-33
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 672
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  556 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 785          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.300e-33
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 672
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  699 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 928          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.230e-32
Identity = 81/229 (35.37%), Postives = 122/229 (53.28%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYL----RRSKPGHKLAPR 648
            C+ CS ++     +P  T  RA ++  R+F+DLSG     SLG   + ++  DD+TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P Y+G+ ERALGL+ D  +A       L  G     S  LW E IA++C+  N  +++S     SPYE+W+G  P     PP  T  +L     + K  HK  P+
Sbjct:    9 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLIPAVYKVKRTHKSEPK 230          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.320e-31
Identity = 84/237 (35.44%), Postives = 124/237 (52.32%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLK-IGVIRTDGGGKW-HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVA-------LLRGVMEGKSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLR----RSKPGHKLAPRGASCIILG 672
            C+ CS ++     +P  T  RA +R  R+F+DLSG     SL    + ++  D +TR+ +V FL+HKSDA  A    + +  A      + V+R+D GG++  G+F  + RK  IK E TP ++P YNG+ ERALGL++D  +A       L  G     S   W E IA+AC+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  LG
Sbjct:  569 CLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 798          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.490e-30
Identity = 82/227 (36.12%), Postives = 121/227 (53.30%), Query Frame = 1
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGL--KIGVIRTDGGGKWHGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVALLRGVMEGKS--------DRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVEYLRRSKPGHKLAPRG 651
            C+ CS S  +   V KST  RA ++  R+++DL G     S+G N + ++  DDF+R+ +V FL+HKSDA   L   + DY   +G+  ++ + RTDGGG++ GQF  + R+ GIK E TPP+ P YNG+ ERALG L   T A L   ++             LW E I+ AC   N   + S +   S YE+++   P   +  PF     L+ S+   K  P+G
Sbjct:  620 CLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAMLK-SRRKAKSQPKG 844          
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.720e-30
Identity = 82/223 (36.77%), Postives = 121/223 (54.26%), Query Frame = 1
Query:   40 VPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVMLCIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGL--KIGVIRTDGGGKWHGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVALLRGVMEGKSDR-----LWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFG-TVEYLR----RSKPGHKLAPRGASCIILG 672
            V KST  RA ++  R+++DL G     S+G N + ++  DDF+R+ +V FL+HKSDA       + DY   +G+  ++ + RTDGGG++ GQF  L R+ GIK E TPP+ P YNG+ ERALGL+ D  +A      +   D      LW E I+ AC   N   + S +   S YE+++      D+ PP G T  +L+    +S+   K  P+G     LG
Sbjct:    9 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFH------DSPPPVGSTYPFLKPAVFKSRRKAKSQPKGEKGWYLG 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123873.1796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE3.840e-3540.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE9.020e-3435.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTI6_9PHAE1.280e-3335.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.290e-3335.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.290e-3335.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.300e-3335.86Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5J7U9_9PHAE2.230e-3235.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXF7_9PHAE2.320e-3135.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE1.490e-3036.12Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAM7_9PHAE3.720e-3036.77Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123873contigH-elongata_contig123873:872..1552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.8
Seed ortholog evalue2e-22
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size681
Cds size681
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.415061-CDS-H-elongata_contig123873:871..15521622929729.415061-CDS-H-elongata_contig123873:871..1552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123873 872..1552 -
1691679135.7457628-CDS-H-elongata_contig123873:871..15521691679135.7457628-CDS-H-elongata_contig123873:871..1552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123873 872..1552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123873.1796.1prot_H-elongata_contig123873.1796.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123873 872..1552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123873.1796.1

>prot_H-elongata_contig123873.1796.1 ID=prot_H-elongata_contig123873.1796.1|Name=mRNA_H-elongata_contig123873.1796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
CVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGRNRFVML
CIDDFTRFKKVRFLEHKSDATNALRDKINDYFAPEGLKIGVIRTDGGGKW
HGQFPSLLRKLGIKGESTPPYNPLYNGIVERALGLLRDNTVALLRGVMEG
KSDRLWVETIAYACDLWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGT
VEYLRRSKPGHKLAPRGASCIILGLTP
back to top

mRNA from alignment at H-elongata_contig123873:872..1552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123873.1796.1 ID=mRNA_H-elongata_contig123873.1796.1|Name=mRNA_H-elongata_contig123873.1796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig123873:872..1552- (Himanthalia elongata Himel1 dioecious)
TGCGTACACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAAATC TACGGAGAATCGGGCTGACAGGCGCGCGGGACGGCTGTTTATTGATCTCT CAGGCCCTTTTCACGAGACGTCTCTCGGACGAAACAGATTCGTCATGCTG TGCATTGACGACTTCACCCGCTTCAAAAAGGTCCGTTTCCTCGAACACAA GAGCGACGCCACGAATGCGTTAAGGGACAAAATCAACGACTACTTCGCGC CCGAGGGCCTCAAGATCGGCGTCATCCGCACGGACGGTGGGGGAAAATGG CACGGCCAGTTCCCGTCTTTGCTGCGTAAGCTCGGAATCAAGGGCGAGTC CACACCCCCATATAACCCCCTATACAATGGCATCGTGGAGCGCGCTCTGG GGCTACTGCGCGACAATACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGT AAGAGCGACCGTTTATGGGTGGAAACTATAGCGTACGCATGCGATTTGTG GAACCGATGCACCTCCTCCTCCCTCGACAGCGGCACCTCACCATATGAGC TTTGGTACGGCCGACGACCGACATTCGACAACATCCCCCCATTCGGGACC GTGGAATATCTACGACGGTCGAAGCCGGGGCACAAACTAGCCCCTCGCGG GGCGAGCTGCATCATACTCGGGCTGACCCCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig123873:872..1552-

>mRNA_H-elongata_contig123873.1796.1 ID=mRNA_H-elongata_contig123873.1796.1|Name=mRNA_H-elongata_contig123873.1796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig123873:872..1552- (Himanthalia elongata Himel1 dioecious)
TGCGTACACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAAATC
TACGGAGAATCGGGCTGACAGGCGCGCGGGACGGCTGTTTATTGATCTCT
CAGGCCCTTTTCACGAGACGTCTCTCGGACGAAACAGATTCGTCATGCTG
TGCATTGACGACTTCACCCGCTTCAAAAAGGTCCGTTTCCTCGAACACAA
GAGCGACGCCACGAATGCGTTAAGGGACAAAATCAACGACTACTTCGCGC
CCGAGGGCCTCAAGATCGGCGTCATCCGCACGGACGGTGGGGGAAAATGG
CACGGCCAGTTCCCGTCTTTGCTGCGTAAGCTCGGAATCAAGGGCGAGTC
CACACCCCCATATAACCCCCTATACAATGGCATCGTGGAGCGCGCTCTGG
GGCTACTGCGCGACAATACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGT
AAGAGCGACCGTTTATGGGTGGAAACTATAGCGTACGCATGCGATTTGTG
GAACCGATGCACCTCCTCCTCCCTCGACAGCGGCACCTCACCATATGAGC
TTTGGTACGGCCGACGACCGACATTCGACAACATCCCCCCATTCGGGACC
GTGGAATATCTACGACGGTCGAAGCCGGGGCACAAACTAGCCCCTCGCGG
GGCGAGCTGCATCATACTCGGGCTGACCCCCTGCGTACACTGCTCCGAAT
CTAGGGTGCGGCGATACGCCGTGCCTAAATCTACGGAGAATCGGGCTGAC
AGGCGCGCGGGACGGCTGTTTATTGATCTCTCAGGCCCTTTTCACGAGAC
GTCTCTCGGACGAAACAGATTCGTCATGCTGTGCATTGACGACTTCACCC
GCTTCAAAAAGGTCCGTTTCCTCGAACACAAGAGCGACGCCACGAATGCG
TTAAGGGACAAAATCAACGACTACTTCGCGCCCGAGGGCCTCAAGATCGG
CGTCATCCGCACGGACGGTGGGGGAAAATGGCACGGCCAGTTCCCGTCTT
TGCTGCGTAAGCTCGGAATCAAGGGCGAGTCCACACCCCCATATAACCCC
CTATACAATGGCATCGTGGAGCGCGCTCTGGGGCTACTGCGCGACAATAC
CGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAGCGACCGTTTATGGG
TGGAAACTATAGCGTACGCATGCGATTTGTGGAACCGATGCACCTCCTCC
TCCCTCGACAGCGGCACCTCACCATATGAGCTTTGGTACGGCCGACGACC
GACATTCGACAACATCCCCCCATTCGGGACCGTGGAATATCTACGACGGT
CGAAGCCGGGGCACAAACTAGCCCCTCGCGGGGCGAGCTGCATCATACTC
GGGCTGACCCCC
back to top