mRNA_H-elongata_contig123873.1795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123873.1795.1
Unique NamemRNA_H-elongata_contig123873.1795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 75.1 bits (183), Expect = 1.750e-15
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            +WK A+E E++       W +V RP+G+ V+  + VFKRK++KDG++E+YK RLVA+G+ QV+GI Y+E+
Sbjct:   45 KWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKET 114          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: T1IMU7_STRMM (Integrase catalytic domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IMU7_STRMM)

HSP 1 Score: 77.4 bits (189), Expect = 5.730e-15
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    7 WKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            WK+A++ E+   I RG W+++ +P    V+G + ++KRK D  G I KYK RLVAQGF+Q+KGI YEES
Sbjct:  472 WKKAMDDEIQLHIKRGTWELISKPPMARVIGCKWIYKRKTDPAGHIIKYKARLVAQGFKQIKGIDYEES 540          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: T1IUK0_STRMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IUK0_STRMM)

HSP 1 Score: 74.3 bits (181), Expect = 2.720e-14
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            +WK+A++ EM+ +  RG WQ+V R     V+G+R +FK+KID  G   K+K RLVAQGFR  KG  +EES
Sbjct:   40 KWKKAMKAEMEAQKQRGTWQLVSRSTNHKVIGSRWIFKQKIDLTGSSPKFKVRLVAQGFRITKGADFEES 109          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 75.5 bits (184), Expect = 2.730e-14
Identity = 30/70 (42.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            +W++A++ E +  ++ G W++++ P  +  +G++ VFK K ++ G +EKYK RLVAQGF+QVKG+ YEE+
Sbjct:  113 EWRKAMQAEYNALMSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEET 182          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 72.4 bits (176), Expect = 3.340e-14
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            +WK A+E EM+   A  V+ +V+ PK K V+G++ +F+RKI+ DG +E+YK RLVAQ F Q  G+ Y+E+
Sbjct:   20 KWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDET 89          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI)

HSP 1 Score: 71.2 bits (173), Expect = 5.100e-14
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    7 WKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            W+RAIE E++     G W+ V +P+G + + TR VF +K D DG++EKYK RLV +GFRQ  G+++ ES
Sbjct:   24 WRRAIERELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFES 92          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-13
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            +WK A+E EM+   A  VW +V+ PKG+  +G++ VFK K+D DG  E++K RLVAQGF Q  G  Y+E+
Sbjct:  251 KWKEAMEKEMESLYANNVWNLVELPKGRKAVGSKWVFKVKVDADGTFERHKARLVAQGFSQKFGSDYDET 320          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR)

HSP 1 Score: 73.2 bits (178), Expect = 1.790e-13
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 PQWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHY 204
            PQWK AI+ E+D  +    W++V  P G   LG R +FKRK++ DG I+KYK RLV +GFRQ +G+ Y
Sbjct:  284 PQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMEADGSIDKYKARLVIKGFRQKEGVDY 351          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A8J6HVS3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HVS3_TENMO)

HSP 1 Score: 72.8 bits (177), Expect = 2.450e-13
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            +W+RAI  EM   I    W +V RP+G  ++G+R+V + K   DG +E+ K RLVAQGF Q  GIH++E+
Sbjct:  749 EWRRAIAAEMKSVIRNDTWTLVDRPRGCKIVGSRIVLRNKFKPDGTLERRKARLVAQGFSQQPGIHFQET 818          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 72.4 bits (176), Expect = 3.370e-13
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 QWKRAIECEMDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 213
            +W++A E E++     GV++ V RP+ + ++G++ VFK K   DG++EKYK RLVAQGF QV+GI Y E+
Sbjct: 1009 EWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNET 1078          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015A81C6A1.750e-1547.14uncharacterized mitochondrial protein AtMg00820-li... [more]
T1IMU7_STRMM5.730e-1550.72Integrase catalytic domain-containing protein n=1 ... [more]
T1IUK0_STRMM2.720e-1450.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B0V5_ROZAC2.730e-1442.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1X7VXK3_AMPQE3.340e-1447.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2C5X5E6_9PEZI5.100e-1447.83Copia protein n=1 Tax=Ceratocystis fimbriata CBS 1... [more]
A0A498M2F0_LABRO1.310e-1348.57Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5N6LDN8_9ASTR1.790e-1350.00Integrase catalytic domain-containing protein n=5 ... [more]
A0A8J6HVS3_TENMO2.450e-1345.71Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A0C2WN23_AMAMK3.370e-1347.14Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123873contigH-elongata_contig123873:2..214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.6
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog126957.SMAR002312-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.359632-CDS-H-elongata_contig123873:1..1841622929729.359632-CDS-H-elongata_contig123873:1..184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123873 2..184 -
1691679135.72664-CDS-H-elongata_contig123873:1..1841691679135.72664-CDS-H-elongata_contig123873:1..184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123873 2..184 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.3755507-UTR-H-elongata_contig123873:184..2141622929729.3755507-UTR-H-elongata_contig123873:184..214Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123873 185..214 -
1691679135.735772-UTR-H-elongata_contig123873:184..2141691679135.735772-UTR-H-elongata_contig123873:184..214Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123873 185..214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123873.1795.1prot_H-elongata_contig123873.1795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123873 2..184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123873.1795.1

>prot_H-elongata_contig123873.1795.1 ID=prot_H-elongata_contig123873.1795.1|Name=mRNA_H-elongata_contig123873.1795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGF
RQVKGIHYEES
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mRNA from alignment at H-elongata_contig123873:2..214-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123873.1795.1 ID=mRNA_H-elongata_contig123873.1795.1|Name=mRNA_H-elongata_contig123873.1795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig123873:2..214- (Himanthalia elongata Himel1 dioecious)
CCGCAATGGAAAAGGGCGATCGAGTGTGAGATGGATGGGAAAATTGCTCG AGGCGTGTGGCAGGTGGTGAAGCGCCCAAAAGGGAAGATGGTGTTGGGCA CGAGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAAG TATAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACA CTACGAGGAATCC
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Coding sequence (CDS) from alignment at H-elongata_contig123873:2..214-

>mRNA_H-elongata_contig123873.1795.1 ID=mRNA_H-elongata_contig123873.1795.1|Name=mRNA_H-elongata_contig123873.1795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig123873:2..214- (Himanthalia elongata Himel1 dioecious)
ATGGATGGGAAAATTGCTCGAGGCGTGTGGCAGGTGGTGAAGCGCCCAAA
AGGGAAGATGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAAATCGACA
AGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGGCGCAGGGTTTC
AGGCAGGTCAAAGGCATACACTACGAGGAATCCATGGATGGGAAAATTGC
TCGAGGCGTGTGGCAGGTGGTGAAGCGCCCAAAAGGGAAGATGGTGTTGG
GCACGAGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAG
AAGTATAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCAT
ACACTACGAGGAATCC
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