mRNA_H-elongata_contig123820.1793.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123820.1793.1
Unique NamemRNA_H-elongata_contig123820.1793.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A6H5KJH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH4_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.180e-54
Identity = 97/131 (74.05%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 MSLERLSLRRNSFSSPEAVDMFLSPPP-APAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLCTG 390
            M++ RLSLRRNS SS  AV+ FL+PP  AP GSLPLS SIR+LDLSSN L  VP ++F+CRGLQTL L +N LSD+SGLPWA L +LENLDLS+NRLR LGDV+LMTWLRRLNLENN+I+PVPLELGLCTG
Sbjct:  379 MAIYRLSLRRNSLSSSAAVEAFLAPPAIAPPGSLPLSISIRELDLSSNDLGEVPPAIFACRGLQTLVLAYNPLSDVSGLPWAALGSLENLDLSNNRLRSLGDVVLMTWLRRLNLENNDISPVPLELGLCTG 509          
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: D8LFI7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI7_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 5.230e-45
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   64 FLSPPP-APAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLCTG 390
            FL+PP  AP GSLPLS SIR+LDLSSN L  VP ++F+CRGLQTL L +N LSD+SGLPWA L +LE LDLS+NRLR LGDV+LMTWLRRLNLENN+I+PVPLELGLCTG
Sbjct:  486 FLAPPAIAPPGSLPLSISIRELDLSSNDLGEVPPAIFACRGLQTLVLAYNPLSDVSGLPWAALGSLETLDLSNNRLRCLGDVVLMTWLRRLNLENNDISPVPLELGLCTG 595          
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: T0QQ18_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QQ18_SAPDV)

HSP 1 Score: 80.9 bits (198), Expect = 3.290e-15
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   88 AGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLC 384
            AG+      +++LD+ +N LS++P ++     L TL L FN LS L+G+PW  + AL  +  S N+L DLG +     L  L++ENN +  +P ELGLC
Sbjct:  488 AGAFHARMKLKELDVRNNALSMLPANLHQLSSLNTLLLSFNRLSTLAGMPWRLMKALSIVSASDNKLTDLGTIFEAPTLSSLSVENNSLQAIPAELGLC 586          
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A0N7L4J0_PLAHL (Leucine-rich repeat protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4J0_PLAHL)

HSP 1 Score: 80.9 bits (198), Expect = 3.310e-15
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    7 LERLSLRRNSFSSPEAVDMFLSPPPAPAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLC 384
            LE L LR+N + + +A+  FL        S  L  +++++DL SN LS++P      R L+ L L  N +  L   PW+ L  +  +DLS N+LR LG +     L+ L+ ENN I  VP+ELGLC
Sbjct:  478 LEVLRLRKN-YLTADAIADFLR------NSTTLGTTLKEIDLRSNKLSIIPVETGQLRSLENLLLSHNQIEALDQFPWSHLTKVSVIDLSDNKLRSLGRIYDAPLLQSLSFENNNITKVPVELGLC 596          
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A8J2X490_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X490_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.570e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  103 LSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLC 384
            L+R++ +LD+S N L  +PRS+F  + L+++ L  N LS   G  WA+L ALE L+L+ NRL  LGDV     LR L+L NN +  VP ELGLC
Sbjct:  506 LARNLSELDMSGNRLIRIPRSLFGLQALRSVTLARNELSGDLGRGWASLLALETLNLADNRLGALGDVHKAPVLRTLDLGNNCLRSVPPELGLC 599          
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A1W0A3H6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3H6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.120e-15
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    4 SLERLSLRRNSFSSPEAVDMFLSPPPAPAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLCT 387
            SL  + LR+NS +     D F S              +++LDL +N L  +P++++  + L TL L +N +S L  +PW  L+AL  + +S N+L  LG +     L  L++ENN +  +P ELGLC+
Sbjct:  462 SLIHVRLRKNSLTEAAFGDNFTS-----------RMKLKELDLRNNALCALPQNIYRLKALYTLLLSYNRISTLDNVPWIALSALSIVSISDNKLTSLGTIYEAPVLSSLSVENNNLQQIPAELGLCS 578          
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A1V9ZKS6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKS6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.630e-12
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 1
Query:    7 LERLSLRRNSFSSPEAVDMFLSPPPAPAGSLPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLC 384
            L  L LR+NS +     D F                +++LDL +N LS +P ++     L TL L FN L+ L+ + W+ +AAL  + ++ N+L D+G +     L  L++ENN +  +P ELGLC
Sbjct:  486 LINLRLRKNSLTERAFDDAFHG-----------RMKLKELDLRNNALSALPANLHQLSSLNTLLLSFNRLASLASVLWSKMAALSIVSIADNKLVDIGTIYEAPQLSSLSVENNNLQQIPPELGLC 600          
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Match: A0A0G2EFT8_9EURO (Putative leucine rich repeat domain-containing protein n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2EFT8_9EURO)

HSP 1 Score: 55.8 bits (133), Expect = 1.870e-6
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1
Query:   97 LPLSRSIRDLDLSSNGLSVVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLGDVILMTWLRRLNLENNEINPVPLELGLCTG 390
            LP+S ++R LDLSSN  + +P S+     L++L L    +  L  L  + L A+  L L SNRLR L  +  +  L RL+L +N+I   P E    TG
Sbjct:  429 LPVSATLRSLDLSSNLFAEIPESLACLTALRSLDLSNCMIESLHSLSRSPLPAVTVLKLRSNRLRSLAGIERLLSLERLDLSDNKITD-PEEAARLTG 525          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123820.1793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KJH4_9PHAE1.180e-5474.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFI7_ECTSI5.230e-4575.45Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
T0QQ18_SAPDV3.290e-1539.39Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A0N7L4J0_PLAHL3.310e-1538.10Leucine-rich repeat protein n=1 Tax=Plasmopara hal... [more]
A0A8J2X490_9STRA4.570e-1547.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1W0A3H6_9STRA6.120e-1533.59Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZKS6_9STRA1.630e-1233.33Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A0G2EFT8_9EURO1.870e-637.76Putative leucine rich repeat domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123820contigH-elongata_contig123820:78..869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue8.9e-39
Seed eggNOG ortholog2880.D8LFI7
EggNOG free text desc.Leucine-rich repeats, outliers
EggNOG OGsCOG4886@1,KOG0472@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.2108748-CDS-H-elongata_contig123820:77..2781622929729.2108748-CDS-H-elongata_contig123820:77..278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123820 78..278 -
1691679135.654768-CDS-H-elongata_contig123820:77..2781691679135.654768-CDS-H-elongata_contig123820:77..278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123820 78..278 -
1622929729.225663-CDS-H-elongata_contig123820:680..8691622929729.225663-CDS-H-elongata_contig123820:680..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123820 681..869 -
1691679135.6792774-CDS-H-elongata_contig123820:680..8691691679135.6792774-CDS-H-elongata_contig123820:680..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123820 681..869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123820.1793.1prot_H-elongata_contig123820.1793.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123820 78..869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123820.1793.1

>prot_H-elongata_contig123820.1793.1 ID=prot_H-elongata_contig123820.1793.1|Name=mRNA_H-elongata_contig123820.1793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MSLERLSLRRNSFSSPEAVDMFLSPPPAPAGSLPLSRSIRDLDLSSNGLS
VVPRSVFSCRGLQTLGLGFNTLSDLSGLPWATLAALENLDLSSNRLRDLG
DVILMTWLRRLNLENNEINPVPLELGLCTG
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mRNA from alignment at H-elongata_contig123820:78..869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123820.1793.1 ID=mRNA_H-elongata_contig123820.1793.1|Name=mRNA_H-elongata_contig123820.1793.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at H-elongata_contig123820:78..869- (Himanthalia elongata Himel1 dioecious)
ATGTCCCTCGAACGCCTCTCGCTGAGGCGGAACTCCTTTTCGTCTCCCGA GGCGGTGGACATGTTCTTGTCGCCGCCCCCCGCCCCCGCCGGATCGCTGC CCCTTTCCCGCTCGATTCGAGACCTGGACCTTTCCTCGAACGGGCTCAGC GTTGTTCCTCGGTCGGTATTTTCGTGTCGCGGTCTGCAGGTGTGATAATT CCTGAAGATGATGCTTTTATCGTTTCCTTCGTTTGACTGTCGGCATTTTT TTTTTTTGGCGTTACCCTCAAGAAAAAGTGTGTAGAGGAAATGACTTGGA TCTTGGTCTTAAGAAGATAATATATAATCACTTTTTTATGTTACCGTATC TAAAAGCGTATCCTGGTCTGATTAAGATCGTGTGTGTGTTTACTGAAATG CGTATTACCGCGCAATTCGGCCCTGTCATGCTAGTCCTTCTAGACTAGTC GCATTGGTTCTCCCATGGGGGGTCAATTATTTATGTGTGTGTGCGTTTAT ATGATCTCGGTGTATATATTTCTGTATTGTGGCAAAGTTACGCATTTCTG TTCCGGATGGAATGTCCCTGTCCGGCTCGTTCCGTGCATAGACCCTTGGG CTGGGGTTCAACACGCTTTCGGACCTGTCTGGCCTCCCTTGGGCGACCCT GGCGGCGCTGGAGAACCTGGATCTGTCTAGCAATCGGCTGCGCGACTTGG GTGACGTCATCCTCATGACTTGGCTGCGTCGCTTGAACCTGGAGAACAAC GAGATTAATCCTGTGCCGTTGGAGCTCGGTCTGTGCACAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig123820:78..869-

>mRNA_H-elongata_contig123820.1793.1 ID=mRNA_H-elongata_contig123820.1793.1|Name=mRNA_H-elongata_contig123820.1793.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig123820:78..869- (Himanthalia elongata Himel1 dioecious)
ATGTCCCTCGAACGCCTCTCGCTGAGGCGGAACTCCTTTTCGTCTCCCGA
GGCGGTGGACATGTTCTTGTCGCCGCCCCCCGCCCCCGCCGGATCGCTGC
CCCTTTCCCGCTCGATTCGAGACCTGGACCTTTCCTCGAACGGGCTCAGC
GTTGTTCCTCGGTCGGTATTTTCGTGTCGCGGTCTGCAGATGTCCCTCGA
ACGCCTCTCGCTGAGGCGGAACTCCTTTTCGTCTCCCGAGGCGGTGGACA
TGTTCTTGTCGCCGCCCCCCGCCCCCGCCGGATCGCTGCCCCTTTCCCGC
TCGATTCGAGACCTGGACCTTTCCTCGAACGGGCTCAGCGTTGTTCCTCG
GTCGGTATTTTCGTGTCGCGGTCTGCAGACCCTTGGGCTGGGGTTCAACA
CGCTTTCGGACCTGTCTGGCCTCCCTTGGGCGACCCTGGCGGCGCTGGAG
AACCTGGATCTGTCTAGCAATCGGCTGCGCGACTTGGGTGACGTCATCCT
CATGACTTGGCTGCGTCGCTTGAACCTGGAGAACAACGAGATTAATCCTG
TGCCGTTGGAGCTCGGTCTGTGCACAGGTACCCTTGGGCTGGGGTTCAAC
ACGCTTTCGGACCTGTCTGGCCTCCCTTGGGCGACCCTGGCGGCGCTGGA
GAACCTGGATCTGTCTAGCAATCGGCTGCGCGACTTGGGTGACGTCATCC
TCATGACTTGGCTGCGTCGCTTGAACCTGGAGAACAACGAGATTAATCCT
GTGCCGTTGGAGCTCGGTCTGTGCACAGGT
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