mRNA_H-elongata_contig123577.1778.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI) HSP 1 Score: 124 bits (311), Expect = 2.740e-31 Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
REK+IMI SCVR+PE + +G GS G GIGF++DWRRLNVAITRAK++MWI+GHAGVL+QS +WRELINDSK+R AF+
Sbjct: 979 REKDIMIFSCVRAPELQRSGDSGSSSG-GGIGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRNAFI 1057
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE) HSP 1 Score: 123 bits (309), Expect = 5.110e-31 Identity = 55/80 (68.75%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
REK+IMI SCVR+PE + +G GS G G+GF++DWRRLNVAITRAK++MWI+GHAGVL+QS +WRELINDSK+R AF+
Sbjct: 1170 REKDIMIFSCVRAPELQRSGDSGSSSG-GGVGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRDAFI 1248
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A1G4KDX5_9SACH (LAMI_0H01640g1_1 n=1 Tax=Lachancea mirantina TaxID=1230905 RepID=A0A1G4KDX5_9SACH) HSP 1 Score: 84.7 bits (208), Expect = 2.290e-17 Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
+EKEI+I+SCVR+ + + +G+GF+ D+RR+NVA+TRAK SMWI+GH L +++ WR+LIND++ RG F
Sbjct: 1761 QEKEIIIISCVRADDSK-----------SGVGFLKDFRRMNVALTRAKASMWILGHYSSLSKNKMWRDLINDARDRGCF 1828
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A5C7HAQ7_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HAQ7_9ROSI) HSP 1 Score: 83.6 bits (205), Expect = 5.750e-17 Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
REK++ I SCVR+ E+E AGS K+G IGF+ D+RR+NVAITRAK S+ ++G A L++ E W LI ++ RG F
Sbjct: 878 REKDVAIFSCVRAKEKEKAGSKKEKKG---IGFVADYRRMNVAITRAKSSVLVVGSASTLRKDEHWNNLIESAENRGCF 953
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A7H9HU86_9SACH (Uncharacterized protein n=2 Tax=Torulaspora TaxID=4948 RepID=A0A7H9HU86_9SACH) HSP 1 Score: 81.3 bits (199), Expect = 3.780e-16 Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
+EKEI+++SCVR+ + + +G+GF+ D+RR+NVA+TRAK SMWI+GH L ++ WR+LIN++K RG
Sbjct: 1744 QEKEIIVISCVRADDSK-----------SGVGFLKDFRRMNVALTRAKTSMWILGHQSSLTKNRLWRDLINNAKERGCL 1811
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: UPI000D1C60C4 (helicase sen1-like isoform X1 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C60C4) HSP 1 Score: 80.5 bits (197), Expect = 6.980e-16 Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
+E++++I+SCVR+ +G+GF+ D RR+NVA+TRA+ S+W+IG+AG L+QSE+W +LI D+K R F+
Sbjct: 990 QERDVIIMSCVRASN-------------HGVGFVADIRRMNVALTRARRSLWVIGNAGTLEQSEDWAKLIEDAKSRNCFI 1056
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: F4R848_MELLP (Uncharacterized protein n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4R848_MELLP) HSP 1 Score: 79.0 bits (193), Expect = 1.480e-15 Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
+EK+I+ILSCVR G K NGIGF+ D RR+NVA+TRAK S+++IG+ L Q + W+ LI+D++ RG F
Sbjct: 262 QEKDIIILSCVR----------GGKDDDNGIGFLKDTRRMNVALTRAKSSLFVIGNQSALVQDKNWKALIDDARERGTF 330
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A1E3PFB1_9ASCO (p-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PFB1_9ASCO) HSP 1 Score: 79.3 bits (194), Expect = 1.780e-15 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
+EK+I+ILSCVRS + NG+GF+ND RR+NVAITRAK S+WI+G+ L +S+ W LI D+K R AF
Sbjct: 1211 QEKDIIILSCVRSGQS------------NGVGFLNDIRRMNVAITRAKSSLWILGNEPTLLKSKVWERLILDAKNRDAF 1277
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: UPI001EAF94A7 (serine-rich adhesin for platelets-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAF94A7) HSP 1 Score: 79.0 bits (193), Expect = 2.460e-15 Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
REK ++I+SCVR+ AGS IGF++D RR+NVA+TRAKY+++I+GH L++ ++WR LI+D+KRR V
Sbjct: 2685 REKHVIIMSCVRA--RRAAGS---------IGFLSDRRRMNVALTRAKYALYILGHLDTLKRGQDWRSLIDDAKRRDVVV 2753
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A482SHI2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHI2_9ARCH) HSP 1 Score: 78.6 bits (192), Expect = 3.070e-15 Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
REK+I+I SCVR+P + + G GIGF+ +W+RLNVAITRA++ +W++GH LQ+ EW LI + + A V
Sbjct: 296 REKDIIIFSCVRAPTGNSSKQLIDRSGA-GIGFLKEWQRLNVAITRARFGLWLVGHKATLQKDGEWDALIRFIEAKKAVV 374 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig123577.1778.1 >prot_H-elongata_contig123577.1778.1 ID=prot_H-elongata_contig123577.1778.1|Name=mRNA_H-elongata_contig123577.1778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp MILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGback to top mRNA from alignment at H-elongata_contig123577:351..590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig123577.1778.1 ID=mRNA_H-elongata_contig123577.1778.1|Name=mRNA_H-elongata_contig123577.1778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig123577:351..590+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig123577:351..590+ >mRNA_H-elongata_contig123577.1778.1 ID=mRNA_H-elongata_contig123577.1778.1|Name=mRNA_H-elongata_contig123577.1778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig123577:351..590+ (Himanthalia elongata Himel1 dioecious)back to top |