mRNA_H-elongata_contig123577.1778.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123577.1778.1
Unique NamemRNA_H-elongata_contig123577.1778.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.740e-31
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
            REK+IMI SCVR+PE + +G  GS  G  GIGF++DWRRLNVAITRAK++MWI+GHAGVL+QS +WRELINDSK+R AF+
Sbjct:  979 REKDIMIFSCVRAPELQRSGDSGSSSG-GGIGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRNAFI 1057          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.110e-31
Identity = 55/80 (68.75%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
            REK+IMI SCVR+PE + +G  GS  G  G+GF++DWRRLNVAITRAK++MWI+GHAGVL+QS +WRELINDSK+R AF+
Sbjct: 1170 REKDIMIFSCVRAPELQRSGDSGSSSG-GGVGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRDAFI 1248          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A1G4KDX5_9SACH (LAMI_0H01640g1_1 n=1 Tax=Lachancea mirantina TaxID=1230905 RepID=A0A1G4KDX5_9SACH)

HSP 1 Score: 84.7 bits (208), Expect = 2.290e-17
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
            +EKEI+I+SCVR+ + +           +G+GF+ D+RR+NVA+TRAK SMWI+GH   L +++ WR+LIND++ RG F
Sbjct: 1761 QEKEIIIISCVRADDSK-----------SGVGFLKDFRRMNVALTRAKASMWILGHYSSLSKNKMWRDLINDARDRGCF 1828          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A5C7HAQ7_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HAQ7_9ROSI)

HSP 1 Score: 83.6 bits (205), Expect = 5.750e-17
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
            REK++ I SCVR+ E+E AGS   K+G   IGF+ D+RR+NVAITRAK S+ ++G A  L++ E W  LI  ++ RG F
Sbjct:  878 REKDVAIFSCVRAKEKEKAGSKKEKKG---IGFVADYRRMNVAITRAKSSVLVVGSASTLRKDEHWNNLIESAENRGCF 953          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A7H9HU86_9SACH (Uncharacterized protein n=2 Tax=Torulaspora TaxID=4948 RepID=A0A7H9HU86_9SACH)

HSP 1 Score: 81.3 bits (199), Expect = 3.780e-16
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
            +EKEI+++SCVR+ + +           +G+GF+ D+RR+NVA+TRAK SMWI+GH   L ++  WR+LIN++K RG  
Sbjct: 1744 QEKEIIVISCVRADDSK-----------SGVGFLKDFRRMNVALTRAKTSMWILGHQSSLTKNRLWRDLINNAKERGCL 1811          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: UPI000D1C60C4 (helicase sen1-like isoform X1 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C60C4)

HSP 1 Score: 80.5 bits (197), Expect = 6.980e-16
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
            +E++++I+SCVR+               +G+GF+ D RR+NVA+TRA+ S+W+IG+AG L+QSE+W +LI D+K R  F+
Sbjct:  990 QERDVIIMSCVRASN-------------HGVGFVADIRRMNVALTRARRSLWVIGNAGTLEQSEDWAKLIEDAKSRNCFI 1056          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: F4R848_MELLP (Uncharacterized protein n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4R848_MELLP)

HSP 1 Score: 79.0 bits (193), Expect = 1.480e-15
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
            +EK+I+ILSCVR          G K   NGIGF+ D RR+NVA+TRAK S+++IG+   L Q + W+ LI+D++ RG F
Sbjct:  262 QEKDIIILSCVR----------GGKDDDNGIGFLKDTRRMNVALTRAKSSLFVIGNQSALVQDKNWKALIDDARERGTF 330          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A1E3PFB1_9ASCO (p-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PFB1_9ASCO)

HSP 1 Score: 79.3 bits (194), Expect = 1.780e-15
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAF 237
            +EK+I+ILSCVRS +             NG+GF+ND RR+NVAITRAK S+WI+G+   L +S+ W  LI D+K R AF
Sbjct: 1211 QEKDIIILSCVRSGQS------------NGVGFLNDIRRMNVAITRAKSSLWILGNEPTLLKSKVWERLILDAKNRDAF 1277          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: UPI001EAF94A7 (serine-rich adhesin for platelets-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAF94A7)

HSP 1 Score: 79.0 bits (193), Expect = 2.460e-15
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
            REK ++I+SCVR+     AGS         IGF++D RR+NVA+TRAKY+++I+GH   L++ ++WR LI+D+KRR   V
Sbjct: 2685 REKHVIIMSCVRA--RRAAGS---------IGFLSDRRRMNVALTRAKYALYILGHLDTLKRGQDWRSLIDDAKRRDVVV 2753          
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Match: A0A482SHI2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHI2_9ARCH)

HSP 1 Score: 78.6 bits (192), Expect = 3.070e-15
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 REKEIMILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIGHAGVLQQSEEWRELINDSKRRGAFV 240
            REK+I+I SCVR+P    +     + G  GIGF+ +W+RLNVAITRA++ +W++GH   LQ+  EW  LI   + + A V
Sbjct:  296 REKDIIIFSCVRAPTGNSSKQLIDRSGA-GIGFLKEWQRLNVAITRARFGLWLVGHKATLQKDGEWDALIRFIEAKKAVV 374          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123577.1778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE51_ECTSI2.740e-3170.00SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JS06_9PHAE5.110e-3168.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1G4KDX5_9SACH2.290e-1748.10LAMI_0H01640g1_1 n=1 Tax=Lachancea mirantina TaxID... [more]
A0A5C7HAQ7_9ROSI5.750e-1750.63Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A7H9HU86_9SACH3.780e-1645.57Uncharacterized protein n=2 Tax=Torulaspora TaxID=... [more]
UPI000D1C60C46.980e-1643.75helicase sen1-like isoform X1 n=4 Tax=Selaginella ... [more]
F4R848_MELLP1.480e-1548.10Uncharacterized protein n=1 Tax=Melampsora larici-... [more]
A0A1E3PFB1_9ASCO1.780e-1550.63p-loop containing nucleoside triphosphate hydrolas... [more]
UPI001EAF94A72.460e-1547.50serine-rich adhesin for platelets-like n=2 Tax=Hal... [more]
A0A482SHI2_9ARCH3.070e-1545.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123577contigH-elongata_contig123577:351..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1e-23
Seed eggNOG ortholog2880.D8LE51
KEGG koko:K10706
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size225
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.5163047-UTR-H-elongata_contig123577:350..3651622929727.5163047-UTR-H-elongata_contig123577:350..365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123577 351..365 +
1691679134.875682-UTR-H-elongata_contig123577:350..3651691679134.875682-UTR-H-elongata_contig123577:350..365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig123577 351..365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.5330448-CDS-H-elongata_contig123577:365..5901622929727.5330448-CDS-H-elongata_contig123577:365..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123577 366..590 +
1691679134.8890252-CDS-H-elongata_contig123577:365..5901691679134.8890252-CDS-H-elongata_contig123577:365..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123577 366..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123577.1778.1prot_H-elongata_contig123577.1778.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123577 366..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123577.1778.1

>prot_H-elongata_contig123577.1778.1 ID=prot_H-elongata_contig123577.1778.1|Name=mRNA_H-elongata_contig123577.1778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MILSCVRSPEEELAGSYGSKQGYNGIGFMNDWRRLNVAITRAKYSMWIIG
HAGVLQQSEEWRELINDSKRRGAFV
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mRNA from alignment at H-elongata_contig123577:351..590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123577.1778.1 ID=mRNA_H-elongata_contig123577.1778.1|Name=mRNA_H-elongata_contig123577.1778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig123577:351..590+ (Himanthalia elongata Himel1 dioecious)
AGGGAAAAGGAGATTATGATATTATCCTGTGTGCGTTCTCCTGAAGAAGA GTTGGCAGGAAGCTACGGTTCGAAGCAAGGGTACAACGGCATCGGTTTCA TGAATGACTGGCGACGGCTTAACGTTGCCATCACGAGGGCCAAGTATTCC ATGTGGATCATAGGGCACGCAGGGGTGTTGCAACAGAGCGAAGAGTGGCG AGAACTCATCAACGACTCCAAGCGAAGGGGTGCCTTCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig123577:351..590+

>mRNA_H-elongata_contig123577.1778.1 ID=mRNA_H-elongata_contig123577.1778.1|Name=mRNA_H-elongata_contig123577.1778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig123577:351..590+ (Himanthalia elongata Himel1 dioecious)
ATGATATTATCCTGTGTGCGTTCTCCTGAAGAAGAGTTGGCAGGAAGCTA
CGGTTCGAAGCAAGGGTACAACGGCATCGGTTTCATGAATGACTGGCGAC
GGCTTAACGTTGCCATCACGAGGGCCAAGTATTCCATGTGGATCATAGGG
CACGCAGGGGTGTTGCAACAGAGCGAAGAGTGGCGAGAACTCATCAACGA
CTCCAAGCGAAGGGGTGCCTTCGTGATGATATTATCCTGTGTGCGTTCTC
CTGAAGAAGAGTTGGCAGGAAGCTACGGTTCGAAGCAAGGGTACAACGGC
ATCGGTTTCATGAATGACTGGCGACGGCTTAACGTTGCCATCACGAGGGC
CAAGTATTCCATGTGGATCATAGGGCACGCAGGGGTGTTGCAACAGAGCG
AAGAGTGGCGAGAACTCATCAACGACTCCAAGCGAAGGGGTGCCTTCGTG
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