mRNA_H-elongata_contig123511.1776.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123511.1776.1
Unique NamemRNA_H-elongata_contig123511.1776.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: A0A0A6YYV8_DICDH (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=A0A0A6YYV8_DICDH)

HSP 1 Score: 202 bits (515), Expect = 8.380e-63
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = 1
Query:    1 EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            +GGAKKVVISAPS DAPM VMGVNEEKYTPDM +VSNASCTTNCLAP+AKVIND FGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGR AG+NIIPSSTGAAKAVGKV
Sbjct:  110 KGGAKKVVISAPSADAPMFVMGVNEEKYTPDMHVVSNASCTTNCLAPIAKVINDSFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRAAGYNIIPSSTGAAKAVGKV 217          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: Q9FVP0_ASCNO (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=Q9FVP0_ASCNO)

HSP 1 Score: 202 bits (515), Expect = 8.620e-63
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1
Query:    1 EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            +GGAKKVVISAPS DAPM VMGVN++KYTPDMD+VSNASCTTNCLAP+AKVIND FGL EGLMTTVHAVTATQKTVDGPSKKDWRGGR AGFNIIPSSTGAAKAVGKV
Sbjct:  111 KGGAKKVVISAPSQDAPMFVMGVNQDKYTPDMDVVSNASCTTNCLAPIAKVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRAAGFNIIPSSTGAAKAVGKV 218          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: D7FZL5_ECTSI (Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL5_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.170e-61
Identity = 97/108 (89.81%), Postives = 101/108 (93.52%), Query Frame = 1
Query:    1 EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            +GGAKKVVISAPS DAPM VMGVN +KYTPDMD+VSNASCTTNCLAP+AKVIND FGL EGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPS TGAAKAVG V
Sbjct:  112 KGGAKKVVISAPSGDAPMFVMGVNHDKYTPDMDVVSNASCTTNCLAPMAKVINDTFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSGTGAAKAVGVV 219          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: A0A2L0CXU9_9COLE (Glyceraldehyde 3 phosphate dehydrogenase (Fragment) n=1 Tax=Oocyclus sp. INB014 TaxID=2055475 RepID=A0A2L0CXU9_9COLE)

HSP 1 Score: 194 bits (493), Expect = 3.580e-61
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 1
Query:    1 EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            +GGAKKVVISAPS DAPM VMGVN++KYT DM++VSNASCTTNCLAP+AKVIND FG+ EGLMTTVHA TATQKTVDGPSKKDWRGGRGA FNIIPSSTGAAKAVGKV
Sbjct:   13 KGGAKKVVISAPSADAPMFVMGVNQDKYTKDMNVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHATTATQKTVDGPSKKDWRGGRGAAFNIIPSSTGAAKAVGKV 120          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: Q1EMT2_9BRYO (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) n=8 Tax=Sphagnum TaxID=13804 RepID=Q1EMT2_9BRYO)

HSP 1 Score: 191 bits (484), Expect = 1.580e-60
Identity = 93/107 (86.92%), Postives = 98/107 (91.59%), Query Frame = 1
Query:    4 GGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            GGAKKVVISAPS D PM VMGVNE+KYT D+DIVSNASCTTNCLAP+AKVINDKFG+ EGLMTTVH+ TATQKTVDGPS KDWRGGR AG NIIPSSTGAAKAVGKV
Sbjct:    1 GGAKKVVISAPSKDVPMFVMGVNEDKYTADLDIVSNASCTTNCLAPLAKVINDKFGIIEGLMTTVHSTTATQKTVDGPSHKDWRGGRAAGVNIIPSSTGAAKAVGKV 107          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: A0A7X8GAT5_9CLOT (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X8GAT5_9CLOT)

HSP 1 Score: 196 bits (499), Expect = 2.430e-60
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 1
Query:    1 EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            +GGAKKVVI+APS+DAPM VMGVN++KYT DM +VSNASCTTNCLAP+AKV+NDKFG+ EGLMTTVHAVTATQKTVDGPSKKDWRGGRGA FNIIPSSTGAAKAVGKV
Sbjct:  112 KGGAKKVVITAPSSDAPMFVMGVNQDKYTKDMKVVSNASCTTNCLAPIAKVLNDKFGIIEGLMTTVHAVTATQKTVDGPSKKDWRGGRGASFNIIPSSTGAAKAVGKV 219          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: F8UC97_9LILI (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) n=9 Tax=Halodule beaudettei TaxID=55314 RepID=F8UC97_9LILI)

HSP 1 Score: 192 bits (487), Expect = 2.580e-60
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 1
Query:    1 EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            +GGAKKVVISAPS DAPM VMGVNE++Y  D+DIVSNASCTTNCLAP+AKVI+DKFG+ EGLMTTVHAVTATQKTVDGPS KDWRGGR AGFNIIPSSTGAAKAVGKV
Sbjct:   15 KGGAKKVVISAPSKDAPMFVMGVNEDQYKSDIDIVSNASCTTNCLAPLAKVIHDKFGILEGLMTTVHAVTATQKTVDGPSMKDWRGGRAAGFNIIPSSTGAAKAVGKV 122          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: D7FP79_ECTSI (Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP79_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 4.180e-60
Identity = 100/107 (93.46%), Postives = 101/107 (94.39%), Query Frame = 1
Query:    4 GGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            GGAKKVVISAPS DAPM VMGVN EKYTPDM +VSNASCTTNCLAPVAKVIND FGL EGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV
Sbjct:  365 GGAKKVVISAPSGDAPMFVMGVNHEKYTPDMTVVSNASCTTNCLAPVAKVINDTFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 471          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: Q703F2_LINUS (Glyceraldehyde 3-phosphate dehydrogenase (Fragment) n=2 Tax=rosids TaxID=71275 RepID=Q703F2_LINUS)

HSP 1 Score: 191 bits (484), Expect = 5.200e-60
Identity = 91/108 (84.26%), Postives = 101/108 (93.52%), Query Frame = 1
Query:    1 EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            +GGAKKVVISAPS DAPM V+GVNE++Y P++DIVSNASCTTNCLAP+AKVIND+FG+ EGLMTTVHA+TATQKTVDGPS KDWRGGR A FNIIPSSTGAAKAVGKV
Sbjct:    1 KGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKV 108          
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Match: Q8VXM5_CHAVU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) n=2 Tax=Chara TaxID=13778 RepID=Q8VXM5_CHAVU)

HSP 1 Score: 194 bits (494), Expect = 6.690e-60
Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = 1
Query:    1 EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAKVINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKV 324
            +GGAKKV+ISAPS DAPM V+GVNE+KYTPD+ IVSNASCTTNCLAP+AKVIND FG+ EGLMTTVH++TATQKTVDGPS KDWRGGRGAGFNIIPSSTGAAKAVGKV
Sbjct:  105 KGGAKKVIISAPSKDAPMFVVGVNEDKYTPDLTIVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHSLTATQKTVDGPSGKDWRGGRGAGFNIIPSSTGAAKAVGKV 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123511.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A6YYV8_DICDH8.380e-6391.67Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=D... [more]
Q9FVP0_ASCNO8.620e-6390.74Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=A... [more]
D7FZL5_ECTSI2.170e-6189.81Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=E... [more]
A0A2L0CXU9_9COLE3.580e-6187.04Glyceraldehyde 3 phosphate dehydrogenase (Fragment... [more]
Q1EMT2_9BRYO1.580e-6086.92Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
A0A7X8GAT5_9CLOT2.430e-6087.04Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=C... [more]
F8UC97_9LILI2.580e-6087.04Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
D7FP79_ECTSI4.180e-6093.46Triosephosphate isomerase/glyceraldehyde-3-phospha... [more]
Q703F2_LINUS5.200e-6084.26Glyceraldehyde 3-phosphate dehydrogenase (Fragment... [more]
Q8VXM5_CHAVU6.690e-6086.11Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123511contigH-elongata_contig123511:142..1237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue1.2e-49
Seed eggNOG ortholog2880.D7FP79
KEGG rclassRC00149,RC00423
KEGG koko:K00134,ko:K01803
KEGG ReactionR01015,R01061
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
EggNOG free text desc.triosephosphate isomerase
EggNOG OGsCOG0057@1,COG0149@1,KOG0657@2759,KOG1643@2759
EC1.2.1.12,5.3.1.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.1350017-CDS-H-elongata_contig123511:141..3211622929727.1350017-CDS-H-elongata_contig123511:141..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123511 142..321 -
1691679134.7670355-CDS-H-elongata_contig123511:141..3211691679134.7670355-CDS-H-elongata_contig123511:141..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123511 142..321 -
1622929727.1550562-CDS-H-elongata_contig123511:1087..12371622929727.1550562-CDS-H-elongata_contig123511:1087..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123511 1088..1237 -
1691679134.777333-CDS-H-elongata_contig123511:1087..12371691679134.777333-CDS-H-elongata_contig123511:1087..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123511 1088..1237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123511.1776.1prot_H-elongata_contig123511.1776.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123511 142..1237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123511.1776.1

>prot_H-elongata_contig123511.1776.1 ID=prot_H-elongata_contig123511.1776.1|Name=mRNA_H-elongata_contig123511.1776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
EGGAKKVVISAPSNDAPMLVMGVNEEKYTPDMDIVSNASCTTNCLAPVAK
VINDKFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTG
AAKAVGKVS*
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mRNA from alignment at H-elongata_contig123511:142..1237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123511.1776.1 ID=mRNA_H-elongata_contig123511.1776.1|Name=mRNA_H-elongata_contig123511.1776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1096bp|location=Sequence derived from alignment at H-elongata_contig123511:142..1237- (Himanthalia elongata Himel1 dioecious)
GAAGGCGGGGCGAAGAAGGTGGTGATCTCCGCTCCGTCGAACGACGCCCC GATGTTGGTAATGGGCGTCAACGAGGAGAAGTACACCCCCGATATGGACA TTGTATCCAACGCCTCGTGCACCACAAACTGCCTTGCCCCCGTGGCCAAG GTAAGCCCACGAGGGGATGCCAATCCATGATCCCGGGTGTTGGGGACGGA TCTGGACAATAGAGGTGTGTCCTGTATTTCTTGGGGGAGGGTTGTCTCCT TTTATTATTTAGGCATGGACGGAGGAAATCCACGGTGGCATCAAGACGCA TGAGAAATATGACTGCGATGAGTGCTAGCTCCATGGCAGAGGAACACATG CGAGTGTGTGTGTGTCATGTGTTTGTGTGTATTTATTAAATTGCACATAA CCGCACAATCCGAACCTGTCTGTCATGCTAGTCATCATCTTAGGCTACTA CTCTATTATATCATTAATAGCATTGATCCTCCCAACGGATTCAATCATAT TTGCTACAAAAAACGTGACAAAGGAAAAATAATCTCTACATTTTGTATCA AAGCCCTCAAAACCTTGCGCTTCCTTTTCCACTTCCTTGTTCGCCATATA TTAGATAGCTTCGGCCGGCCCCTATTGGACCAACGCTCTCTCCTGTCTAC GCTTTGCAGTACTGCTACCCAAATCTCCCCCGTGTTCTATCGTCTTACGC TTCTTCTACCCTCCTCTCCCCTTCCCGCCCCTGGGTTTTGGTAATTTGCA TGACACGACGTTCTCCTGAGGGGTCGGGTCTTGTGTCTCTGGAAATAGTA TATATATATTATAAATAGTATATATATCATAAATAGTATATATATATATA TCATAAATAGTATATATATATATATATATATATATATATTTCTTCCGGAT GTTTGACGCTTGACAGGTGATCAACGATAAGTTCGGCCTCACGGAGGGAC TCATGACCACGGTGCACGCGGTAACGGCCACCCAGAAGACGGTTGACGGC CCCTCCAAGAAAGACTGGCGAGGTGGTCGCGGTGCTGGGTTCAACATCAT CCCGTCTTCCACGGGCGCCGCCAAGGCCGTGGGCAAGGTGAGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig123511:142..1237-

>mRNA_H-elongata_contig123511.1776.1 ID=mRNA_H-elongata_contig123511.1776.1|Name=mRNA_H-elongata_contig123511.1776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig123511:142..1237- (Himanthalia elongata Himel1 dioecious)
GAAGGCGGGGCGAAGAAGGTGGTGATCTCCGCTCCGTCGAACGACGCCCC
GATGTTGGTAATGGGCGTCAACGAGGAGAAGTACACCCCCGATATGGACA
TTGTATCCAACGCCTCGTGCACCACAAACTGCCTTGCCCCCGTGGCCAAG
GAAGGCGGGGCGAAGAAGGTGGTGATCTCCGCTCCGTCGAACGACGCCCC
GATGTTGGTAATGGGCGTCAACGAGGAGAAGTACACCCCCGATATGGACA
TTGTATCCAACGCCTCGTGCACCACAAACTGCCTTGCCCCCGTGGCCAAG
GTGATCAACGATAAGTTCGGCCTCACGGAGGGACTCATGACCACGGTGCA
CGCGGTAACGGCCACCCAGAAGACGGTTGACGGCCCCTCCAAGAAAGACT
GGCGAGGTGGTCGCGGTGCTGGGTTCAACATCATCCCGTCTTCCACGGGC
GCCGCCAAGGCCGTGGGCAAGGTGAGTTAAGTGATCAACGATAAGTTCGG
CCTCACGGAGGGACTCATGACCACGGTGCACGCGGTAACGGCCACCCAGA
AGACGGTTGACGGCCCCTCCAAGAAAGACTGGCGAGGTGGTCGCGGTGCT
GGGTTCAACATCATCCCGTCTTCCACGGGCGCCGCCAAGGCCGTGGGCAA
GGTGAGTTAA
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