mRNA_H-elongata_contig1235.1775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1235.1775.1
Unique NamemRNA_H-elongata_contig1235.1775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5KQG9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG9_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 6.880e-57
Identity = 115/241 (47.72%), Postives = 146/241 (60.58%), Query Frame = 3
Query:  459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
            TA Q G++LVGE+ PC GC           R  + AA P   +HID  GPF ++L GSRY++MFVD+ASR+QR YG R KS +  L  V+RF+ADM   G    FR DN  E+T SAF  +C+  GIRRE T P  P+QN  VESA+ R +K GH AR  +  +  +V L  +  V       LW+ S LWAS  FNRSAT AN G +SP E FFG +PP+ ++PFF+    RV R TK D
Sbjct:  112 TAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVPFGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRAKSDT--LKFVQRFLADMNGMGTPGCFRMDNGGEFTGSAFSSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHILAMG-HVDLSSVPNV-GVNGHRLWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKAD 348          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5JD95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD95_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 7.220e-56
Identity = 116/241 (48.13%), Postives = 147/241 (61.00%), Query Frame = 3
Query:  459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
            TA Q G++LVGEL PC GC           R  + AA P   VHID  GPF E++ GSRY++MFVD+ASR+QR YG R KS +  L  VKRF+ADM   G    FR DN  E+T +AFI++C+  GIRRE T P  P+QN   ESA+ R +K GH AR  +  +  +V L  +  +       LW+ S LWAS  FNRSAT AN G +SP E FFG +PP+ ++PFF+    RV R TK D
Sbjct:   70 TAKQQGVRLVGELQPCVGCVEAKGRRAPVPRRGTRAAVPFGKVHIDLTGPFTEAMDGSRYLIMFVDSASRWQRAYGMRAKSDT--LKYVKRFLADMNGMGTPGCFRMDNGGEFTGAAFIEFCDAAGIRREYTAPNTPKQNAVAESAIWRAMKGGHAARRHILSMA-HVDLASVPNI-GANGQRLWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKAD 306          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5JL11_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL11_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 7.510e-56
Identity = 112/242 (46.28%), Postives = 147/242 (60.74%), Query Frame = 3
Query:  459 TALQHGIQLVGELAPCSGC-----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
            TA Q G+QLVGEL PC GC            R  + AA P   VHID  GP+ E+  GSRY++MFVD+ASR+QR YG R KS +  L   +RF+AD+   G    FR DN  E+T++AF+ +C+  GIRRE T P  P+QN  VESA+ R +K GH AR  V  +  +  L  + G+ D     LW+ S +WAS  FNRSAT+AN   +SP E FFG +PP+ ++PFF+    RV R +K D
Sbjct:   69 TAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGMRAKSDT--LTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHVLSMG-HFDLASIPGM-DANGHRLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKAD 306          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5L7I6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I6_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 5.290e-55
Identity = 113/242 (46.69%), Postives = 147/242 (60.74%), Query Frame = 3
Query:  459 TALQHGIQLVGELAPCSGC-----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
            TA Q G+QLVGEL PC GC            R  + AA P   VHID  GP+ E+  GSRY++MFVD+ASR+QR YG R KS +  L   +RF+AD+   G    FR DN  E+T++AF+ +C+  GIRRE T P  P+QN  VESA+ R +K GH AR  V  +  N  L  + G+ D     LW+ S +WAS  FNRSAT+AN   +SP E FFG +PP+ ++PFF+    RV R +K D
Sbjct:    4 TAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGMRAKSDT--LTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHVLSVG-NFDLASIPGM-DANGHRLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKAD 241          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5K469_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K469_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 2.590e-54
Identity = 113/241 (46.89%), Postives = 143/241 (59.34%), Query Frame = 3
Query:  459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
            TA Q G++LVGE+ PC GC           R  + AA P   +HID  GPF ++L GSRY++MFVD+ASR+QR YG R KS +  L  V+RF+ADM   G    FR DN  E+T SAF  +C+  GIRRE T P  P+QN  VESA+ R +K GH AR  +  +  +V L  +  V       LW+ S LWAS  FNRSAT AN   +S  E FFG +PP+ ++PFF     RV R TK D
Sbjct:    4 TAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVPFGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRAKSDT--LKFVQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHILAMG-HVDLSSIPNV-GVNGHRLWLASALWASACFNRSATKANLSWMSSFEAFFGRKPPLTVVPFFHEGMMRVKRATKAD 240          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5JS38_9PHAE (Integrase catalytic domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS38_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 4.670e-54
Identity = 115/241 (47.72%), Postives = 146/241 (60.58%), Query Frame = 3
Query:  459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
            TA Q G++LVGE+ PC GC           R  + AA P   +HID  GPF ++L GSRY++MFVD+ASR+QR YG R KS +  L  V+RF+ADM   G    FR DN  E+T SAF  +C+  GIRRE T P  P+QN  VESA+ R +K GH AR  +  +  +V L  +  V       LW+ S LWAS  FNRSAT AN G +SP E FFG +PP+ ++PFF+    RV R TK D
Sbjct:  112 TAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVPFGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRAKSDT--LKFVQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHILAMG-HVDLSSVPNV-GVNGHRLWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKAD 348          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5KS66_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS66_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 6.560e-54
Identity = 113/242 (46.69%), Postives = 141/242 (58.26%), Query Frame = 3
Query:  462 ALQHGIQLVGELAPCSGCSRTTSWAAA-----------PMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMDP 1145
            A QHG++L G L PC GC +     A            P D+ HID  GP   SLGGS +++MFVD+ SR+ + YG R KS +  L  VK+F+ADM   GV R FR DN  E+    FI +C+  GIRR  T P  PQ+NGP E A+ R  KAGH ARL   +LFP +   R+ G     +  LW+ES  WA+ GFNRS T AN G  SP E+F G  PP+ I+PF +P Y RV R  KMDP
Sbjct:   57 AKQHGLRLTGVLQPCGGCLQAKGKKAGVPHQLGTRAERPHDLWHIDLCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDT--LAFVKKFLADMSGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQRNGPAEGAIWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGER-LWLESCHWAAGGFNRSPTKANVGYKSPHELFTGRPPPLQIVPFLQPGYMRVTRARKMDP 295          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5LQ43_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ43_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 7.730e-54
Identity = 117/261 (44.83%), Postives = 154/261 (59.00%), Query Frame = 3
Query:  459 TALQHGIQLVGELAPCSGC-----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMDPHN------HGGGSCTRAT 1181
            TA Q G+QLVGEL PC GC            R  + AA P   VHID  GP+ E+  GSRY++MFVD+ASR+QR YG R KS +  L   +RF+AD+   G    FR DN  E+T++AF+ +C+  GIRRE T P  P+QN  VESA+ R +K GH AR  V  +  +  L  + G+ D     LW+ S +WAS  FNRSAT+AN   +SP E FFG +PP+ ++PFF+    RV R +K D  +      HG  S + AT
Sbjct:    4 TAKQQGVQLVGELQPCVGCIEAKGRRTPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGMRAKSDT--LTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGHAARRHVLSMG-HFDLASIPGM-DANGHRLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARSHSDAT 260          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5JT85_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT85_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 9.010e-54
Identity = 115/241 (47.72%), Postives = 144/241 (59.75%), Query Frame = 3
Query:  459 TALQHGIQLVGELAPCSGC----------SRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMD 1142
            TA Q G++LVGE+ PC GC           R  + AA P   V ID  GPF ++L GSRY++MFVD+ASR+QR YG R KS +  L  V+ F+ADM   G    FR DN  E+T SAF  +C+  GIRRE TTP  P+QN  VESA+   +K GH AR  +  +  +V L  +  V       LW+ S LWAS  FNRSAT AN G +SP E FFG +PP+ I+PFF+    RV R TK D
Sbjct:   24 TAKQQGVRLVGEMQPCLGCVEAKGRRAPVPRRGTRAAVPFGKVQIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRTKSDT--LKFVQWFLADMNGMGTPGCFRVDNGGEFTGSAFASFCDAAGIRREYTTPDTPKQNAVVESAIWCAMKWGHAARRHILAMG-HVDLSSIPNV-GVNGHRLWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTIVPFFQEGIMRVKRATKAD 260          
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.030e-53
Identity = 115/242 (47.52%), Postives = 142/242 (58.68%), Query Frame = 3
Query:  462 ALQHGIQLVGELAPCSGCSRTTSWAAA-----------PMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQRPYGARDKSASSILDLVKRFVADM---GVSRGFRTDNDAEYTNSAFIDYCNGLGIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKGVRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILPFFKPAYHRVPRRTKMDP 1145
            A QHG++L G L PC GC +     A            P D+ HID  GP   SLGGS +++MFVD+ SR+ + YG R KS +  L  VK+F+ADM   GV R FR DN  E+    FI +C+  GIRR  T P  PQQNGP ESA+ R  KAGH ARL   +LFP +   R+ G     +  LW+ES  WA+ GFNRS T AN G  SP E+F G  PP+ I+PF +P Y RV R  KMDP
Sbjct:   57 AKQHGLRLTGVLQPCGGCLQAKGKKAGVPHQLGTRAERPHDLWHIDLCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDT--LAFVKKFLADMSGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAESAIWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGER-LWLESCHWAAGGFNRSPTKANVGYKSPHELFTGRPPPLQIVPFLQPGYMRVTRARKMDP 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1235.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQG9_9PHAE6.880e-5747.72Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JD95_9PHAE7.220e-5648.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JL11_9PHAE7.510e-5646.28Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L7I6_9PHAE5.290e-5546.69Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K469_9PHAE2.590e-5446.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JS38_9PHAE4.670e-5447.72Integrase catalytic domain-containing protein n=4 ... [more]
A0A6H5KS66_9PHAE6.560e-5446.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LQ43_9PHAE7.730e-5444.83Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JT85_9PHAE9.010e-5447.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKG5_9PHAE1.030e-5347.52Integrase catalytic domain-containing protein n=6 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1235contigH-elongata_contig1235:13656..16475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue3.2e-17
Seed eggNOG ortholog67593.Physo132148
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QII3@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1842
Cds size840
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.9085553-UTR-H-elongata_contig1235:13655..141941622929726.9085553-UTR-H-elongata_contig1235:13655..14194Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1235 13656..14194 -
1691679134.673717-UTR-H-elongata_contig1235:13655..141941691679134.673717-UTR-H-elongata_contig1235:13655..14194Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1235 13656..14194 -
1622929726.919944-UTR-H-elongata_contig1235:14282..144011622929726.919944-UTR-H-elongata_contig1235:14282..14401Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1235 14283..14401 -
1691679134.6906717-UTR-H-elongata_contig1235:14282..144011691679134.6906717-UTR-H-elongata_contig1235:14282..14401Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1235 14283..14401 -
1622929727.0640464-UTR-H-elongata_contig1235:16131..164751622929727.0640464-UTR-H-elongata_contig1235:16131..16475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1235 16132..16475 -
1691679134.7566187-UTR-H-elongata_contig1235:16131..164751691679134.7566187-UTR-H-elongata_contig1235:16131..16475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1235 16132..16475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.9360192-CDS-H-elongata_contig1235:14401..144371622929726.9360192-CDS-H-elongata_contig1235:14401..14437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1235 14402..14437 -
1691679134.716565-CDS-H-elongata_contig1235:14401..144371691679134.716565-CDS-H-elongata_contig1235:14401..14437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1235 14402..14437 -
1622929726.961328-CDS-H-elongata_contig1235:14470..150931622929726.961328-CDS-H-elongata_contig1235:14470..15093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1235 14471..15093 -
1691679134.7272336-CDS-H-elongata_contig1235:14470..150931691679134.7272336-CDS-H-elongata_contig1235:14470..15093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1235 14471..15093 -
1622929727.0371778-CDS-H-elongata_contig1235:15120..151891622929727.0371778-CDS-H-elongata_contig1235:15120..15189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1235 15121..15189 -
1691679134.7347193-CDS-H-elongata_contig1235:15120..151891691679134.7347193-CDS-H-elongata_contig1235:15120..15189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1235 15121..15189 -
1622929727.049547-CDS-H-elongata_contig1235:16019..161311622929727.049547-CDS-H-elongata_contig1235:16019..16131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1235 16020..16131 -
1691679134.7440119-CDS-H-elongata_contig1235:16019..161311691679134.7440119-CDS-H-elongata_contig1235:16019..16131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1235 16020..16131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1235.1775.1prot_H-elongata_contig1235.1775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1235 14402..16131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1235.1775.1

>prot_H-elongata_contig1235.1775.1 ID=prot_H-elongata_contig1235.1775.1|Name=mRNA_H-elongata_contig1235.1775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
MQSPPGPHGPPSPAPPSATNWSFSSWHSQAQTHYVPPATALQHGIQLVGE
LAPCSGCSRTTSWAAAPMDMVHIDTAGPFQESLGGSRYVVMFVDNASRFQ
RPYGARDKSASSILDLVKRFVADMGVSRGFRTDNDAEYTNSAFIDYCNGL
GIRRELTTPYMPQQNGPVESALSRTIKAGHVARLVVNKLFPNVRLERLKG
VRDPADSSLWMESVLWASEGFNRSATTANSGMLSPLEVFFGSRPPMPILP
FFKPAYHRVPRRTKMDPHNHGGGSCTRAT*
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mRNA from alignment at H-elongata_contig1235:13656..16475-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1235.1775.1 ID=mRNA_H-elongata_contig1235.1775.1|Name=mRNA_H-elongata_contig1235.1775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2820bp|location=Sequence derived from alignment at H-elongata_contig1235:13656..16475- (Himanthalia elongata Himel1 dioecious)
CTGTACACCGTCAACAACAGACACATCCGCGGCACCAGCACCAGCAGTAC TGGAGTAGAGCTCCCAACCAGCGGAGACCCCAACATTGGGGATGTCAGCC GCATTGGCACCAGAGGCGCGTGTGTCAACACTGCGGCGAGGAGGAGCATT TCCCCGCAAATTGCAGGATACCGCCCGCACCAACAACGCAGCCCTACTCC TCGGTACCTTCAAGAGTTCACGTCGCGCACTACGGCTCATACCCCTCTCC CCAGTGAACTTTGCACGGATACAGGGGCGAACATTCAACCGCGTCAACTT ACGGGCCTCCACCGCCACCGGAGAGCTATGCCCCTGCCCCGCCGATGCAA TCACCACCTGGGCCCCATGGACCACCTTCACCGGCGCCTCCCTCCGCCAC CAACTGGAGCTTCTCGTCCTGGCACTCCCAGGCTCAGACACACTATGTGC CACCAGGTGAGTTTCCGAGTTCGATTTCAAGTGATTGAAATGAGCACGTT GACAATGTATGTGGTAGCTACCTATCCTCGGCGTTCGTTGAACAGCTGGT AAGTGTTGAACAAGTTGGAGATGTTTGGGTAGGTGACAGTGGAGCCACGT CACACATGACCCGCAGCGCTGATTTCATGTACGATACGAGACCGCCCCCC CCCCCCAGAGATCAAGGATTATCCTGGGGGATGGATCTATAAAAAAGGTA TCGTTTATTGGTAAGATCGATTTAATATTTCACAGCAGGATCGATCATCC GATCACGCTCCATGACGTCTCATTTTTACCAGATTAGGGTTTAACCTGTT TTCCTTCCACGTAGTACATGAAAAGTATGACGTCATCCTCAATCGAACAG GAGCGTATTTACTTGGGGCTCCCCTAGTATTACCCCGTAGCCGCACCGGA TCGTCACTGCGTCCAACTAGGTTGATACCAGGAGGCAATACAAACGCAAA TACCGCGTTGGGGACTTTTACACAGCCCCCTTCCCACCGTTCTGAAGTAG CCATTTCCCCTCTACCGACCATCAGTGTAGCTTCCCCCGTTGCACACCAA AGTAGGTCAGGTGTGAGTAGTTCTAGTCCAAGCAATGTGGTTGCCGGGAT CAGCGAGAAAACTTCTGATGTAGAATGCGGAGCGGGTACAGGTACTGAGT CGACAGTGAGCAAAAAGGCTGGGATGGCCGCGGCAGTTCTCTCCCCTGGT GGCGTAGTCTTAATAAAATAAAAGAGTAATGGATATTAACCGCTTCCACG TTTCTCCCGCCCACGCCCCCTCGAATGTGTTGAAAGCCACTGCCCTACAG CACGGCATTCAACTGGTGGGGGAATTGGCTCCGTGTTCTGGTTGTTCAAG GACCAATGGGATTCGCGCTCCGCACCACACCACGTCCTGGGCAGCGGCTC CCATGGACATGGTACACATCGACACCGCGGGACCGTTCCAGGAGTCACTG GGAGGCTCGCGATATGTAGTCATGTTCGTGGACAACGCTTCCCGCTTTCA GCGCCCTTACGGGGCCCGGGACAAGAGCGCGTCGTCCATCCTCGACTTGG TGAAACGCTTTGTGGCAGATATGGGAGTTTCGCGCGGTTTTAGGACCGAC AACGACGCCGAGTACACAAACTCGGCGTTCATCGATTACTGCAATGGCCT TGGGATTCGCCGCGAACTGACGACCCCCTACATGCCGCAGCAGAATGGCC CAGTGGAGAGCGCGCTTTCCAGGACAATTAAGGCAGGACACGTGGCACGG CTGGTAGTCAACAAGCTCTTCCCGAACGTGCGCCTCGAGAGGCTGAAGGG AGTTCGAGACCCAGCCGACTCGAGCTTATGGATGGAATCTGTGTTGTGGG CATCCGAAGGGTTCAACCGCTCCGCGACCACGGCGAACAGCGGCATGCTT TCCCCGCTTGAGGTATTCTTCGGGAGCCGCCCGCCAATGCCGATCTTGCC GTTTTTCAAGCCGGCGTACCATCGCGTTCCGCGGCGAACCAAAATGGACC CTCACGCGCGCCCGTGTTTTTTCTTGAATTTTGGATACAATCATGGAGGC GGGTCGTGCACTCGCGCGACGTGACTTGGCACCAGCCTCGGGAGCCGTTT ACTTCCCCGACCCCGACAGTTGGATCGGGAGGGCCCCACTTGTCAGTGGG TGCCGACCCGCTGGAGTATTTGTACTTCGAGTTGACAGCTACTGCTACCG CGACACCTGCTGACGCTCCAGCTACCGCCGCGCCGTTGCCTGCGTTAGCC ACCGCACCCGCGCCGCCACTTAACCCCCCAGGATCAATTCCCGATCGCGT TATTCGGGAACTGGGGCACGAAGCAGACGTGCGAATGCCTGGATACGCCC TAGGCGAAACGCGCGCAACCATGGTCGACCACCATAGCAGGGGTCTGATG TCCCGTGCTGCACTGGCGCGCAGTTGCGCCACCCGCGAGATGATTGGCGT GGCAATCGCCGAATACTCACAGCCGAGGCGTGAAGCTGACCTCCCAACTG CCCCCGCCAACGACCTGTCCACCCCGTCAACCATCGCCGAAGCCGAGACA TCGGAGCACGCTGAGGTACGGCGTGGTTTCACGAGGTACGAGATCCACGG CCTAATGCAGGCCAACACGTTCGGTCCAGCATAGCAACCAATTAGTAATG TGATCAACGCGAAATGGCTGTTCAGTTGGTCGGATGAATTTGGTTGGATT AGCAAACGAAATCGAGATTAGTCGCGCGTGGATTTATAAGCAGCGCGAAG GCATAGATTTTGGAGAGACGTTTGCCCCCACCGTTTCGAGTTCTTATGTG CGTTTATTGAGTGCGATTGC
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Coding sequence (CDS) from alignment at H-elongata_contig1235:13656..16475-

>mRNA_H-elongata_contig1235.1775.1 ID=mRNA_H-elongata_contig1235.1775.1|Name=mRNA_H-elongata_contig1235.1775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig1235:13656..16475- (Himanthalia elongata Himel1 dioecious)
ATGCAATCACCACCTGGGCCCCATGGACCACCTTCACCGGCGCCTCCCTC
CGCCACCAACTGGAGCTTCTCGTCCTGGCACTCCCAGGCTCAGACACACT
ATGTGCCACCAGATGCAATCACCACCTGGGCCCCATGGACCACCTTCACC
GGCGCCTCCCTCCGCCACCAACTGGAGCTTCTCGTCCTGGCACTCCCAGG
CTCAGACACACTATGTGCCACCAGCCACTGCCCTACAGCACGGCATTCAA
CTGGTGGGGGAATTGGCTCCGTGTTCTGGTTGTTCAAGGACCACCACTGC
CCTACAGCACGGCATTCAACTGGTGGGGGAATTGGCTCCGTGTTCTGGTT
GTTCAAGGACCACGTCCTGGGCAGCGGCTCCCATGGACATGGTACACATC
GACACCGCGGGACCGTTCCAGGAGTCACTGGGAGGCTCGCGATATGTAGT
CATGTTCGTGGACAACGCTTCCCGCTTTCAGCGCCCTTACGGGGCCCGGG
ACAAGAGCGCGTCGTCCATCCTCGACTTGGTGAAACGCTTTGTGGCAGAT
ATGGGAGTTTCGCGCGGTTTTAGGACCGACAACGACGCCGAGTACACAAA
CTCGGCGTTCATCGATTACTGCAATGGCCTTGGGATTCGCCGCGAACTGA
CGACCCCCTACATGCCGCAGCAGAATGGCCCAGTGGAGAGCGCGCTTTCC
AGGACAATTAAGGCAGGACACGTGGCACGGCTGGTAGTCAACAAGCTCTT
CCCGAACGTGCGCCTCGAGAGGCTGAAGGGAGTTCGAGACCCAGCCGACT
CGAGCTTATGGATGGAATCTGTGTTGTGGGCATCCGAAGGGTTCAACCGC
TCCGCGACCACGGCGAACAGCGGCATGCTTTCCCCGCTTGAGGTATTCTT
CGGGAGCCGCCCGCCAATGCCGATCTTGCCGTTTTTCAAGCCGGCGTACC
ATCGCGTTCCGCGGCGAACCAAAATGGACCCTCACCGTCCTGGGCAGCGG
CTCCCATGGACATGGTACACATCGACACCGCGGGACCGTTCCAGGAGTCA
CTGGGAGGCTCGCGATATGTAGTCATGTTCGTGGACAACGCTTCCCGCTT
TCAGCGCCCTTACGGGGCCCGGGACAAGAGCGCGTCGTCCATCCTCGACT
TGGTGAAACGCTTTGTGGCAGATATGGGAGTTTCGCGCGGTTTTAGGACC
GACAACGACGCCGAGTACACAAACTCGGCGTTCATCGATTACTGCAATGG
CCTTGGGATTCGCCGCGAACTGACGACCCCCTACATGCCGCAGCAGAATG
GCCCAGTGGAGAGCGCGCTTTCCAGGACAATTAAGGCAGGACACGTGGCA
CGGCTGGTAGTCAACAAGCTCTTCCCGAACGTGCGCCTCGAGAGGCTGAA
GGGAGTTCGAGACCCAGCCGACTCGAGCTTATGGATGGAATCTGTGTTGT
GGGCATCCGAAGGGTTCAACCGCTCCGCGACCACGGCGAACAGCGGCATG
CTTTCCCCGCTTGAGGTATTCTTCGGGAGCCGCCCGCCAATGCCGATCTT
GCCGTTTTTCAAGCCGGCGTACCATCGCGTTCCGCGGCGAACCAAAATGG
ACCCTCACAATCATGGAGGCGGGTCGTGCACTCGCGCGACGTGAAATCAT
GGAGGCGGGTCGTGCACTCGCGCGACGTGA
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