mRNA_H-elongata_contig123335.1768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig123335.1768.1
Unique Name	mRNA_H-elongata_contig123335.1768.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.420e-32
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFFNSPKPG LVGKLNWRIKEPDGEFFTRDVVQ F QDPKNPAHLVNKDNEYLHYR D
Sbjct:  173 QVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQTFDQDPKNPAHLVNKDNEYLHYRDD 232

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7R9W8D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8D9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.030e-26
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF    PG   GKLNWRI+EPDGEFFTRD +Q+F QDP+NPAHL+N DNEYLHY  D
Sbjct:    8 QVHFFTETSPGKFFGKLNWRIQEPDGEFFTRDALQRFVQDPENPAHLINHDNEYLHYEDD 67

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A6V0W7S4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0W7S4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.900e-24
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF   +PG   GKLNWRI+EPDGEFFTRD +Q+F QDPKNPAHL+N DNEYLHY+ D
Sbjct:  215 QVHFFTETEPGKFFGKLNWRIEEPDGEFFTRDAIQEFYQDPKNPAHLINHDNEYLHYQDD 274

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: B8C775_THAPS (Diadinoxanthin de-epoxidase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C775_THAPS)

HSP 1 Score: 102 bits (255), Expect = 2.510e-24
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF    PG  VGKLNWRI+EPDGEFFTRD VQ+F QDP NPAHL+N DNEYLHY+ D
Sbjct:  224 QVHFFTETAPGKFVGKLNWRIEEPDGEFFTRDAVQEFVQDPNNPAHLINHDNEYLHYQDD 283

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7S2FML7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FML7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.980e-24
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF SP+ G+L GKLNWRI EPDGEFFT++ VQ+F QDPKNP  L N DNEYLHY+ D
Sbjct:   41 QVHFFTSPQEGVLYGKLNWRIVEPDGEFFTKNAVQRFVQDPKNPGILYNHDNEYLHYKDD 100

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.370e-24
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF SPKPG+L GKLNWRI EPDGEFFTR+ VQ+FKQDP  P  L N DNEYLHY+ D
Sbjct:  150 QVHFFTSPKPGLLYGKLNWRIVEPDGEFFTRNAVQRFKQDPSMPGVLYNHDNEYLHYQDD 209

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A1Z5JG75_FISSO (Violaxanthin de-epoxidase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG75_FISSO)

HSP 1 Score: 100 bits (248), Expect = 2.380e-23
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF  P+PG   G+LNWR++ PDGEFFTRD +Q+F QDPK PAHL+N DNEYLHY+ D
Sbjct:  219 QVHFFTEPEPGTFFGQLNWRVENPDGEFFTRDALQRFVQDPKQPAHLINHDNEYLHYKDD 278

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7S4NGD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGD3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.910e-23
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF    PG   GKLNWRI+EPDGEF+TRD +Q+F QDP+NPAHLVN DNEYLHY  D
Sbjct:  228 QVHFFTETAPGKFFGKLNWRIQEPDGEFYTRDALQRFVQDPENPAHLVNHDNEYLHYEDD 287

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BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A1E7FV42_9STRA (Violaxanthin de-epoxidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV42_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.260e-23
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF    PG   GKLNWRI+EPDGEFF RD VQ+F QDPK PAHLVN DNEYLHY+ D
Sbjct:  228 QVHFFTETAPGKFYGKLNWRIEEPDGEFFNRDAVQEFIQDPKQPAHLVNHDNEYLHYQDD 287

[Close]

BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7S2A2S3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2S3_TRICV)

HSP 1 Score: 98.6 bits (244), Expect = 9.340e-23
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 1

Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 180
            +VHFF   +PG   GKLNWRI+EPDGEFFTRD +Q F QDPK PAHL+N DNEYLHY  D
Sbjct:  241 QVHFFTETEPGKFFGKLNWRIQEPDGEFFTRDAIQVFVQDPKMPAHLINHDNEYLHYEDD 300

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot

BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K8F1_9PHAE	7.420e-32	91.67	VDE domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7R9W8D9_9STRA	6.030e-26	70.00	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]
A0A6V0W7S4_9STRA	1.900e-24	71.67	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
B8C775_THAPS	2.510e-24	73.33	Diadinoxanthin de-epoxidase n=1 Tax=Thalassiosira ...	[more]
A0A7S2FML7_9STRA	7.980e-24	70.00	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]
A0A7S2SKA3_9STRA	8.370e-24	73.33	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A1Z5JG75_FISSO	2.380e-23	66.67	Violaxanthin de-epoxidase n=2 Tax=Fistulifera sola...	[more]
A0A7S4NGD3_9STRA	4.910e-23	70.00	Hypothetical protein (Fragment) n=1 Tax=Odontella ...	[more]
A0A1E7FV42_9STRA	8.260e-23	71.67	Violaxanthin de-epoxidase n=1 Tax=Fragilariopsis c...	[more]
A0A7S2A2S3_TRICV	9.340e-23	70.00	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig123335	contig	H-elongata_contig123335:404..583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	124.0
Seed ortholog evalue	2.3e-26
Seed eggNOG ortholog	2880.D7FY70
Preferred name	VDE
KEGG rclass	RC01624,RC03037
KEGG ko	ko:K09839
KEGG Reaction	R07178,R07179,R10055
KEGG Pathway	ko00906,ko01100,ko01110,map00906,map01100,map01110
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010028,GO:0015994,GO:0016108,GO:0016116,GO:0016122,GO:0016491,GO:0019752,GO:0019904,GO:0031976,GO:0031977,GO:0031984,GO:0032787,GO:0033013,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046422,GO:0046483,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:1901360,GO:1901564
EggNOG free text desc.	violaxanthin de-epoxidase activity
EggNOG OGs	28K1H@1,2QSFY@2759
EC	1.23.5.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000
Hectar predicted targeting category	other localisation
Exons	1
Model size	180
Cds size	180
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929725.958078-CDS-H-elongata_contig123335:403..583	1622929725.958078-CDS-H-elongata_contig123335:403..583	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig123335 404..583 +
1691679134.2036555-CDS-H-elongata_contig123335:403..583	1691679134.2036555-CDS-H-elongata_contig123335:403..583	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig123335 404..583 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig123335.1768.1	prot_H-elongata_contig123335.1768.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig123335 404..583 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig123335:404..583+
coding sequence from alignment at H-elongata_contig123335:404..583+

protein sequence of mRNA_H-elongata_contig123335.1768.1

>prot_H-elongata_contig123335.1768.1 ID=prot_H-elongata_contig123335.1768.1|Name=mRNA_H-elongata_contig123335.1768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNK
DNEYLHYRGD

mRNA from alignment at H-elongata_contig123335:404..583+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig123335.1768.1 ID=mRNA_H-elongata_contig123335.1768.1|Name=mRNA_H-elongata_contig123335.1768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig123335:404..583+ (Himanthalia elongata Himel1 dioecious)
AAGGTGCACTTCTTCAACAGCCCCAAGCCCGGCATGCTCGTGGGGAAGCT
GAACTGGCGCATCAAGGAACCGGACGGCGAGTTCTTCACGAGGGACGTGG
TGCAGAAGTTCAAGCAAGATCCCAAGAATCCGGCGCACCTGGTGAACAAG
GACAACGAGTACCTGCATTACAGAGGTGAT

Coding sequence (CDS) from alignment at H-elongata_contig123335:404..583+

>mRNA_H-elongata_contig123335.1768.1 ID=mRNA_H-elongata_contig123335.1768.1|Name=mRNA_H-elongata_contig123335.1768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig123335:404..583+ (Himanthalia elongata Himel1 dioecious)
AAGGTGCACTTCTTCAACAGCCCCAAGCCCGGCATGCTCGTGGGGAAGCT
GAACTGGCGCATCAAGGAACCGGACGGCGAGTTCTTCACGAGGGACGTGG
TGCAGAAGTTCAAGCAAGATCCCAAGAATCCGGCGCACCTGGTGAACAAG
GACAACGAGTACCTGCATTACAGAGGTGATAAGGTGCACTTCTTCAACAG
CCCCAAGCCCGGCATGCTCGTGGGGAAGCTGAACTGGCGCATCAAGGAAC
CGGACGGCGAGTTCTTCACGAGGGACGTGGTGCAGAAGTTCAAGCAAGAT
CCCAAGAATCCGGCGCACCTGGTGAACAAGGACAACGAGTACCTGCATTA
CAGAGGTGAT