mRNA_H-elongata_contig12330.1764.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 2.080e-10 Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 79 SGIAFAVQSQD-----ARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFH-----GRSDEPITLCDVSHVPDLKFNLFSFHKVQQ 372
SG FA+ +Q+ R FW DSGA+ + + +M+ +R P GK + +GT LRV+ +G +++ FH G D + + DV VP + FNLFS H Q+
Sbjct: 620 SGNGFALSAQNPLSRFGREKFW-ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQR 726
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: UPI00073A387C (uncharacterized protein LOC107062574 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A387C) HSP 1 Score: 55.5 bits (132), Expect = 2.230e-6 Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 1
Query: 61 GESVNFSGIAFAVQSQDARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
G + +SG F V + N WI DSGAS HM + SK + TP + + R+ V Y GN+++ + +TL +V HVPD K+NL S HK+
Sbjct: 412 GTILKYSGSCFTVYNS----NVWIIDSGASEHMCFN-SKSFMSLTPLPIPLNISLPNSFRITVTYTGNVNILPN------LTLYNVLHVPDFKYNLLSVHKL 502
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A2I0VFZ4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VFZ4_9ASPA) HSP 1 Score: 55.1 bits (131), Expect = 3.060e-6 Identity = 31/101 (30.69%), Postives = 48/101 (47.52%), Query Frame = 1
Query: 64 ESVNFSGIAFAVQSQDARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
++ N + A S A NN W DSGAS H+TN + + +P G + DG + + G + R +TL + H+P+LK+NL S K+
Sbjct: 298 QTTNTNNRAMVAASDSATNNNWFLDSGASAHLTNSLDNL-SIASPYQGSDSITIGDGRSMSIANSGTGSLPIPARK---LTLDQILHIPELKYNLLSISKL 394
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A834WY56_9FABA (Putative LRR receptor-like serine/threonine-protein kinase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WY56_9FABA) HSP 1 Score: 53.1 bits (126), Expect = 1.370e-5 Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query: 94 AVQSQDARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKVQQ 372
A+ + N+ WI DSGAS HMT +TS ++ P +V +DGT +V IG++ + + ITL +V HVP L NL S K+ Q
Sbjct: 101 AMTTSRTPNDSWIVDSGASDHMTGNTS-LFSKLAPCKTSLQVKIADGTMAKVLGIGSVKIC------DTITLLNVLHVPTLACNLLSISKLTQ 186
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A336MT82_CULSO (CSON006917 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MT82_CULSO) HSP 1 Score: 52.8 bits (125), Expect = 1.870e-5 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 1
Query: 121 NFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLC--DVSHVPDLKFNLFSFHKV 366
N W DSGAS HM ND +++ K ++ +DG +L IG++ + SD+ + + DV HVP+LK NL S HK+
Sbjct: 269 NNWFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A336N465_CULSO (CSON011514 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336N465_CULSO) HSP 1 Score: 52.8 bits (125), Expect = 1.950e-5 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 1
Query: 121 NFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLC--DVSHVPDLKFNLFSFHKV 366
N W DSGAS HM ND +++ K ++ +DG +L IG++ + SD+ + + DV HVP+LK NL S HK+
Sbjct: 269 NNWFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A2N9ERC5_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ERC5_FAGSY) HSP 1 Score: 52.8 bits (125), Expect = 1.990e-5 Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 118 NNFWIGDSGASCHMTNDTSKMYHVRTP--PFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
N+ W+ DSGAS HMT ++S + ++ P PF V ++GT+ V+ IG + S +T +V H+P+ FNL S HK+
Sbjct: 491 NSSWVIDSGASDHMTGNSSLLSNISDPCSPFS---VTVANGTKTPVQGIGTV-------STPNLTFSNVLHLPEFPFNLLSVHKL 565
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A803LZV8_CHEQI (Retrotran_gag_3 domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LZV8_CHEQI) HSP 1 Score: 52.0 bits (123), Expect = 3.330e-5 Identity = 38/115 (33.04%), Postives = 52/115 (45.22%), Query Frame = 1
Query: 76 FSGIAFAVQSQDARNNF------------------WIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
FS I A+QSQ+A N WI DSGA+ H+ ++ S + + +DG + VE+IG + D I L +V HVP LKFNL S HK+
Sbjct: 332 FSSILKALQSQNAENPAESQAHVASTCLLTCSNAKWIVDSGATDHICSNLSLFESYKCFDKTPSTITIADGKHVTVEHIGTVQF------DNGIVLQNVLHVPGLKFNLISTHKL 440
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A803LD36_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LD36_CHEQI) HSP 1 Score: 51.6 bits (122), Expect = 4.580e-5 Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 127 WIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
W+ DSGA+ H+ +D + ++ TP + + DG+R+ V+ G + + ++ I+L +V HVPD KFNL S HK+
Sbjct: 277 WLLDSGATDHIFSDIA-LFAKLTPVLTPYYITIPDGSRILVKNTGVVKL------NDEISLLNVLHVPDFKFNLISVHKL 349
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Match: A0A1S3Y3U3_TOBAC (uncharacterized protein LOC107771880 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3Y3U3_TOBAC) HSP 1 Score: 51.6 bits (122), Expect = 4.850e-5 Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1
Query: 61 GESVNFSGIAFA----------VQSQDARNNFWIGDSGASCHMTNDTSKMYHVRTPPFGKHEVMTSDGTRLRVEYIGNIDVFFHGRSDEPITLCDVSHVPDLKFNLFSFHKV 366
G +VNF+GI+ + ++R N WI DSGA+ HMT +TS + ++RT + + V G +++V IG D+ R +L V VP KFNL S H +
Sbjct: 142 GGAVNFAGISACSTHFDSSDQLCEKSNSRANSWILDSGATNHMTYNTSLLINIRTLVY-PYLVTPPKGYKVKVTLIG--DIILSPR----FSLRKVLFVPSFKFNLISVHSL 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12330.1764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12330.1764.1 >prot_H-elongata_contig12330.1764.1 ID=prot_H-elongata_contig12330.1764.1|Name=mRNA_H-elongata_contig12330.1764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp SNSSWSSLTDRAVMTQFCTPGESVNFSGIAFAVQSQDARNNFWIGDSGASback to top mRNA from alignment at H-elongata_contig12330:6..380- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12330.1764.1 ID=mRNA_H-elongata_contig12330.1764.1|Name=mRNA_H-elongata_contig12330.1764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig12330:6..380- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12330:6..380- >mRNA_H-elongata_contig12330.1764.1 ID=mRNA_H-elongata_contig12330.1764.1|Name=mRNA_H-elongata_contig12330.1764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig12330:6..380- (Himanthalia elongata Himel1 dioecious)back to top |