mRNA_H-elongata_contig1233.1763.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1233.1763.1
Unique NamemRNA_H-elongata_contig1233.1763.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: UPI001EF442B3 (ankyrin repeat domain-containing protein n=2 Tax=Luteitalea sp. TBR-22 TaxID=2802971 RepID=UPI001EF442B3)

HSP 1 Score: 52.4 bits (124), Expect = 1.700e-6
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   22 QGNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHL 144
            QG +PLM+AA  GSPE +RVLLEAGADP  R+++  TA  L
Sbjct:  528 QGATPLMIAAEEGSPETVRVLLEAGADPTRRDSLGHTARDL 568          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A0C2XC64_9AGAM (Asparaginase n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2XC64_9AGAM)

HSP 1 Score: 50.4 bits (119), Expect = 8.180e-6
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   25 GNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLAA 150
            G +PL VA +NGS +C +VLLEAGA  H R+++D TAL+ AA
Sbjct:  670 GRTPLHVAGLNGSVKCTKVLLEAGALIHIRDSLDHTALYYAA 711          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A4S4LYF3_9AGAM (Asparaginase n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LYF3_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 1.120e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   10 WHN-GQGNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLAAS 153
            W N   G SPL VAA+NGS  C+ +LLE GA  H R+ +  TAL+ A+S
Sbjct:  521 WLNPASGRSPLHVAAINGSLNCVGILLEGGALVHLRDALGHTALYYASS 569          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A2V8UWY5_9BACT (Cytochrome c domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8UWY5_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.520e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   25 GNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLAA 150
            G +PLM AA+ G  +C+R+LLE GADP+ RN +  TAL  AA
Sbjct:  192 GATPLMYAALRGGEDCVRLLLEQGADPNLRNGVGATALMWAA 233          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A7S0Y4P7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y4P7_HEMAN)

HSP 1 Score: 48.1 bits (113), Expect = 2.710e-5
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1
Query:    1 DRRWHNGQGNSPLMVAAVNGSPECIRVLLEAGADPHA 111
            D     G+G +PLM+A + G PEC+R LLEAGADP A
Sbjct:  121 DVEARGGRGETPLMLATMCGQPECLRALLEAGADPDA 157          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A7S3XD60_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XD60_9CHLO)

HSP 1 Score: 48.9 bits (115), Expect = 2.790e-5
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   25 GNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLAAS 153
            G +PL  AA NG   C+R+LL+A ADP  RN    T+LH AAS
Sbjct:  154 GMTPLYYAAKNGHEACVRILLDAKADPLVRNNTGSTSLHAAAS 196          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A8H6TP42_MYCCL (Asparaginase n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A8H6TP42_MYCCL)

HSP 1 Score: 48.9 bits (115), Expect = 2.860e-5
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   25 GNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLAA 150
            G SPL  A++NGS EC+ +LL +GA  H R+T+  TAL+ AA
Sbjct:  558 GGSPLHAASLNGSAECVEILLHSGALVHLRDTLGHTALYYAA 599          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A2M6V061_9BURK (Uncharacterized protein n=1 Tax=Limnohabitans sp. G3-2 TaxID=1100711 RepID=A0A2M6V061_9BURK)

HSP 1 Score: 48.5 bits (114), Expect = 3.410e-5
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   25 GNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLA 147
            G +PLM+AA+ GSPE +++L++AGAD + +NT+  TAL  A
Sbjct:  157 GTTPLMMAAMYGSPESVKLLIQAGADLNVKNTVGMTALDFA 197          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A5E3WX83_9AGAM (Asparaginase n=2 Tax=unclassified Peniophora TaxID=2635284 RepID=A0A5E3WX83_9AGAM)

HSP 1 Score: 48.5 bits (114), Expect = 3.910e-5
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   10 WHN-GQGNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLAA 150
            W N   G SPL VAA+NGS +C++ LL+AGA  H R+ +  TAL  AA
Sbjct:  467 WVNPASGQSPLQVAAINGSLKCVKRLLQAGALVHLRDIMGHTALFYAA 514          
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Match: A0A218KNQ5_9RICK (Uncharacterized protein n=1 Tax=Wolbachia endosymbiont of Folsomia candida TaxID=169402 RepID=A0A218KNQ5_9RICK)

HSP 1 Score: 48.5 bits (114), Expect = 3.940e-5
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   16 NGQGNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLAAS 153
            NG G +PL++A+  GSP  I   L+ GAD HA++  D+TALH AA+
Sbjct:  352 NGDGATPLLIASRFGSPLIIESFLKNGADAHAKDKHDNTALHYAAN 397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1233.1763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
UPI001EF442B31.700e-660.98ankyrin repeat domain-containing protein n=2 Tax=L... [more]
A0A0C2XC64_9AGAM8.180e-657.14Asparaginase n=1 Tax=Serendipita vermifera MAFF 30... [more]
A0A4S4LYF3_9AGAM1.120e-551.02Asparaginase n=1 Tax=Bondarzewia mesenterica TaxID... [more]
A0A2V8UWY5_9BACT1.520e-554.76Cytochrome c domain-containing protein n=1 Tax=Aci... [more]
A0A7S0Y4P7_HEMAN2.710e-556.76Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3XD60_9CHLO2.790e-553.49Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A8H6TP42_MYCCL2.860e-552.38Asparaginase n=1 Tax=Mycena chlorophos TaxID=65847... [more]
A0A2M6V061_9BURK3.410e-551.22Uncharacterized protein n=1 Tax=Limnohabitans sp. ... [more]
A0A5E3WX83_9AGAM3.910e-552.08Asparaginase n=2 Tax=unclassified Peniophora TaxID... [more]
A0A218KNQ5_9RICK3.940e-550.00Uncharacterized protein n=1 Tax=Wolbachia endosymb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1233contigH-elongata_contig1233:16630..16785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929725.6845853-CDS-H-elongata_contig1233:16629..167851622929725.6845853-CDS-H-elongata_contig1233:16629..16785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1233 16630..16785 -
1691679134.1400259-CDS-H-elongata_contig1233:16629..167851691679134.1400259-CDS-H-elongata_contig1233:16629..16785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1233 16630..16785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1233.1763.1prot_H-elongata_contig1233.1763.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1233 16630..16785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1233.1763.1

>prot_H-elongata_contig1233.1763.1 ID=prot_H-elongata_contig1233.1763.1|Name=mRNA_H-elongata_contig1233.1763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
DRRWHNGQGNSPLMVAAVNGSPECIRVLLEAGADPHARNTIDDTALHLAA
S*
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mRNA from alignment at H-elongata_contig1233:16630..16785-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1233.1763.1 ID=mRNA_H-elongata_contig1233.1763.1|Name=mRNA_H-elongata_contig1233.1763.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig1233:16630..16785- (Himanthalia elongata Himel1 dioecious)
GACAGACGGTGGCACAATGGGCAGGGAAATTCGCCTCTCATGGTCGCGGC AGTAAACGGGAGCCCTGAGTGCATCCGAGTTCTCCTGGAAGCCGGAGCAG ATCCACACGCCCGAAATACGATTGACGATACTGCCCTACACCTCGCGGCG AGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig1233:16630..16785-

>mRNA_H-elongata_contig1233.1763.1 ID=mRNA_H-elongata_contig1233.1763.1|Name=mRNA_H-elongata_contig1233.1763.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig1233:16630..16785- (Himanthalia elongata Himel1 dioecious)
GACAGACGGTGGCACAATGGGCAGGGAAATTCGCCTCTCATGGTCGCGGC
AGTAAACGGGAGCCCTGAGTGCATCCGAGTTCTCCTGGAAGCCGGAGCAG
ATCCACACGCCCGAAATACGATTGACGATACTGCCCTACACCTCGCGGCG
AGTTAAGACAGACGGTGGCACAATGGGCAGGGAAATTCGCCTCTCATGGT
CGCGGCAGTAAACGGGAGCCCTGAGTGCATCCGAGTTCTCCTGGAAGCCG
GAGCAGATCCACACGCCCGAAATACGATTGACGATACTGCCCTACACCTC
GCGGCGAGTTAA
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