mRNA_H-elongata_contig123245.1756.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123245.1756.1
Unique NamemRNA_H-elongata_contig123245.1756.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.520e-26
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFLKA 195
            ++L WW   G   +P L PVA+QVFGNQA AAQVERDFSGC +LLT NRSRMDTYWVEM MFL A
Sbjct:   29 EILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHA 93          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.310e-23
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFL 189
            +VL WW N G   +P L PVA+QV GNQA AAQVERDFS C +LLT NRSR+DTYWVEM MFL
Sbjct:  104 EVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFL 166          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.870e-22
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFLKA 195
            +VL WW   G   +P L PVA+QVFGNQA+ +QVERDFSG G LL PNRSRMDTYWVE+ MFL A
Sbjct:  191 EVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNA 255          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.950e-22
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFL 189
            +VL WW N G   +P L PVA+QV GNQA AAQVERDFS C +LLT NRSR+DTYWVEM MFL
Sbjct:  502 EVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFL 564          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.200e-21
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFLKA 195
            +VL++W   G   +PSL  VA+Q FGNQASAA VERDFSGCG  + PNRSR+D YWVEM MFLKA
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKA 453          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5KGJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.060e-19
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = -2
Query:    3 ALRNMAISTQ*VSIRLRFGVRRWPQPLKSRSTCAAEA*FPNTCSATGPRLGYCNIPLFAHQAST 194
            AL N+ IS   VS+RLRF V R PQPLKSRS CAAEA FPNTC ATG R+G   +PL AHQ ST
Sbjct:   14 ALGNITISNPYVSVRLRFEVMRVPQPLKSRSICAAEAWFPNTCWATGARVGNWFLPLVAHQPST 77          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.960e-19
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   40 YPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFL 189
            +P L PVA+QV GNQA AAQVERDFS C +LLT NRSR+DTYWVEM MFL
Sbjct:    2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFL 51          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.940e-19
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFLKA 195
            +VL++WA  G   +P+L  VA+Q FG+Q SAA VERDFSGCG  L PNRSR++ YWVEM MFL A
Sbjct:  731 EVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNA 795          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.450e-16
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFLK 192
            DVLA+W   G   +PSL  VA+Q FG+QASAAQ+ERDFS CG   T NRSR + YW+EM M LK
Sbjct:  491 DVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLK 554          
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.120e-14
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRSRMDTYWVEMAMFLKA 195
            DVL +W   G   +P+L  VA+Q FG+QA AAQ+ERDFS  G L   NR+R+D YWVEM +FLKA
Sbjct:  386 DVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKA 450          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123245.1756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSA7_9PHAE4.520e-2670.77Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE1.310e-2369.84Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE1.870e-2267.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE2.950e-2269.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE8.200e-2166.15Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGJ7_9PHAE2.060e-1967.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP16_9PHAE2.960e-1976.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE9.940e-1961.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE1.450e-1660.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE1.120e-1456.92Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123245contigH-elongata_contig123245:1568..1762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.1
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog568076.XP_007817118.1
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs21E0K@147550,39UGI@33154,3P5TX@4751,3QX04@4890,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929724.6065812-CDS-H-elongata_contig123245:1567..17621622929724.6065812-CDS-H-elongata_contig123245:1567..1762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123245 1568..1762 +
1691679133.6910505-CDS-H-elongata_contig123245:1567..17621691679133.6910505-CDS-H-elongata_contig123245:1567..1762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123245 1568..1762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123245.1756.1prot_H-elongata_contig123245.1756.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123245 1568..1762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123245.1756.1

>prot_H-elongata_contig123245.1756.1 ID=prot_H-elongata_contig123245.1756.1|Name=mRNA_H-elongata_contig123245.1756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
DVLAWWANKGILQYPSLGPVAEQVFGNQASAAQVERDFSGCGHLLTPNRS
RMDTYWVEMAMFLKA
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mRNA from alignment at H-elongata_contig123245:1568..1762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123245.1756.1 ID=mRNA_H-elongata_contig123245.1756.1|Name=mRNA_H-elongata_contig123245.1756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig123245:1568..1762+ (Himanthalia elongata Himel1 dioecious)
GACGTGCTCGCTTGGTGGGCAAACAAGGGGATATTGCAGTACCCCAGCCT CGGGCCTGTGGCAGAGCAGGTGTTTGGGAATCAGGCCTCTGCTGCGCAAG TTGAGCGCGATTTCAGTGGCTGCGGCCACCTTCTGACTCCGAACCGCAGC CGTATGGACACTTACTGGGTGGAGATGGCCATGTTTCTCAAGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig123245:1568..1762+

>mRNA_H-elongata_contig123245.1756.1 ID=mRNA_H-elongata_contig123245.1756.1|Name=mRNA_H-elongata_contig123245.1756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig123245:1568..1762+ (Himanthalia elongata Himel1 dioecious)
GACGTGCTCGCTTGGTGGGCAAACAAGGGGATATTGCAGTACCCCAGCCT
CGGGCCTGTGGCAGAGCAGGTGTTTGGGAATCAGGCCTCTGCTGCGCAAG
TTGAGCGCGATTTCAGTGGCTGCGGCCACCTTCTGACTCCGAACCGCAGC
CGTATGGACACTTACTGGGTGGAGATGGCCATGTTTCTCAAGGCCGACGT
GCTCGCTTGGTGGGCAAACAAGGGGATATTGCAGTACCCCAGCCTCGGGC
CTGTGGCAGAGCAGGTGTTTGGGAATCAGGCCTCTGCTGCGCAAGTTGAG
CGCGATTTCAGTGGCTGCGGCCACCTTCTGACTCCGAACCGCAGCCGTAT
GGACACTTACTGGGTGGAGATGGCCATGTTTCTCAAGGCC
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