mRNA_H-elongata_contig122962.1747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122962.1747.1
Unique NamemRNA_H-elongata_contig122962.1747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: A0A812RBK5_SYMMI (DNA helicase (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RBK5_SYMMI)

HSP 1 Score: 114 bits (285), Expect = 5.540e-32
Identity = 59/65 (90.77%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILDK 195
            +VMEQQT+SIAKAGITTTLNARAAVLAAANPLYGRYNKRR++SEN++LPNSLLSRFDLLFLILDK
Sbjct:   11 EVMEQQTISIAKAGITTTLNARAAVLAAANPLYGRYNKRRSVSENVDLPNSLLSRFDLLFLILDK 75
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BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: D7FI93_ECTSI (DNA replication licensing factor MCM7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI93_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.830e-30
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILDK 195
            +VMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILDK
Sbjct:  468 EVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILDK 532
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BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: F0YGS7_AURAN (DNA replication licensing factor MCM7 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGS7_AURAN)

HSP 1 Score: 112 bits (281), Expect = 1.300e-27
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILDK 195
            +VMEQQTVSIAKAGITTTLNAR+AVLAAANPLYGRYNK++ M+ENINLPNSLLSRFDLLFL+LDK
Sbjct:  476 EVMEQQTVSIAKAGITTTLNARSAVLAAANPLYGRYNKKKTMAENINLPNSLLSRFDLLFLLLDK 540
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BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: A0A835YVG8_9STRA (DNA replication licensing factor MCM7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVG8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.600e-27
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILDK 195
            +VMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYN+ R MSENINLPNSL+SRFDL+FL+LD+
Sbjct:  468 EVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNRNRPMSENINLPNSLISRFDLIFLLLDR 532
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BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: A0A7S1XLD2_9STRA (DNA replication licensing factor MCM7 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLD2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.080e-27
Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILDK 195
            +VMEQQTVSIAKAGITT LNAR AVLAAANPLYGRYNK+R++SEN+NLPNSLLSRFDLLFL+LD+
Sbjct:  349 EVMEQQTVSIAKAGITTQLNARTAVLAAANPLYGRYNKKRSISENVNLPNSLLSRFDLLFLLLDR 413
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BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: K0RK18_THAOC (DNA helicase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RK18_THAOC)

HSP 1 Score: 107 bits (267), Expect = 1.060e-26
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILD 192
            +VMEQQTVS+AKAGI  TLNARAAVLAAANPLYGRYN+R+++SEN+NLPNSLLSRFDL+FLILD
Sbjct:   11 EVMEQQTVSVAKAGIVATLNARAAVLAAANPLYGRYNRRKSLSENVNLPNSLLSRFDLMFLILD 74
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BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: A0A7S1BLQ2_9STRA (DNA replication licensing factor MCM7 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLQ2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.540e-26
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILD 192
            +VMEQQTVSIAKAGIT TLNARAAVLAAANPLYGRYN+ +++SENINLPNSLLSRFDLLFL+LD
Sbjct:  343 EVMEQQTVSIAKAGITATLNARAAVLAAANPLYGRYNRHKSLSENINLPNSLLSRFDLLFLLLD 406
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BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: B8C2X2_THAPS (DNA replication licensing factor MCM7 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2X2_THAPS)

HSP 1 Score: 107 bits (267), Expect = 1.170e-25
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILD 192
            +VMEQQTVS+AKAGI  TLNARAAVLAAANPLYGRYN+R+++SEN+NLPNSLLSRFDL+FLILD
Sbjct:  353 EVMEQQTVSVAKAGIVATLNARAAVLAAANPLYGRYNRRKSLSENVNLPNSLLSRFDLMFLILD 416
[Close]
BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: A0A3R7CDJ0_9STRA (DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7CDJ0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.170e-25
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    4 VMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILD 192
            VMEQQTVSIAKAGITTTLNAR++VLAAANP+YGRYNK+   S+NINLPN+LLSRFDLLFLILD
Sbjct:    1 VMEQQTVSIAKAGITTTLNARSSVLAAANPIYGRYNKKLTASQNINLPNALLSRFDLLFLILD 63
[Close]
BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Match: A0A7S3QI09_9STRA (DNA helicase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QI09_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.720e-25
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 QVMEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSLLSRFDLLFLILD 192
            +VMEQQTVS+AKAGI  TLNARAAVLAAANPLYGRYN++++MSEN+NLPNSLLSRFDL+FLILD
Sbjct:  574 EVMEQQTVSVAKAGIIATLNARAAVLAAANPLYGRYNRKKSMSENVNLPNSLLSRFDLMFLILD 637
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122962.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812RBK5_SYMMI5.540e-3290.77DNA helicase (Fragment) n=1 Tax=Symbiodinium micro... [more]
D7FI93_ECTSI5.830e-3098.46DNA replication licensing factor MCM7 n=2 Tax=Ecto... [more]
F0YGS7_AURAN1.300e-2789.23DNA replication licensing factor MCM7 n=1 Tax=Aure... [more]
A0A835YVG8_9STRA5.600e-2787.69DNA replication licensing factor MCM7 n=1 Tax=Trib... [more]
A0A7S1XLD2_9STRA7.080e-2786.15DNA replication licensing factor MCM7 (Fragment) n... [more]
K0RK18_THAOC1.060e-2684.38DNA helicase n=1 Tax=Thalassiosira oceanica TaxID=... [more]
A0A7S1BLQ2_9STRA6.540e-2687.50DNA replication licensing factor MCM7 n=1 Tax=Core... [more]
B8C2X2_THAPS1.170e-2584.38DNA replication licensing factor MCM7 (Fragment) n... [more]
A0A3R7CDJ0_9STRA1.170e-2585.71DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci... [more]
A0A7S3QI09_9STRA1.720e-2584.38DNA helicase n=1 Tax=Chaetoceros debilis TaxID=122... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122962contigH-elongata_contig122962:652..846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D7FI93
Preferred nameMCM7
KEGG koko:K02210,ko:K05666
KEGG TC3.A.1.208.2
KEGG Pathwayko01523,ko01524,ko02010,ko03030,ko04110,ko04111,ko04113,ko04976,map01523,map01524,map02010,map03030,map04110,map04111,map04113,map04976
KEGG ModuleM00285
GOsGO:0000166,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006268,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022616,GO:0030466,GO:0030554,GO:0031261,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036387,GO:0036388,GO:0040029,GO:0042555,GO:0042623,GO:0043142,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071162,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097373,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1902292,GO:1902299,GO:1902315,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0482@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko02000,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size189
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.890681-UTR-H-elongata_contig122962:651..6571622929723.890681-UTR-H-elongata_contig122962:651..657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122962 652..657 +
1691679133.4289253-UTR-H-elongata_contig122962:651..6571691679133.4289253-UTR-H-elongata_contig122962:651..657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122962 652..657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.911176-CDS-H-elongata_contig122962:657..8461622929723.911176-CDS-H-elongata_contig122962:657..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122962 658..846 +
1691679133.4385598-CDS-H-elongata_contig122962:657..8461691679133.4385598-CDS-H-elongata_contig122962:657..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122962 658..846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122962.1747.1prot_H-elongata_contig122962.1747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122962 658..846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122962.1747.1

>prot_H-elongata_contig122962.1747.1 ID=prot_H-elongata_contig122962.1747.1|Name=mRNA_H-elongata_contig122962.1747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MEQQTVSIAKAGITTTLNARAAVLAAANPLYGRYNKRRAMSENINLPNSL
LSRFDLLFLILDK
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mRNA from alignment at H-elongata_contig122962:652..846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122962.1747.1 ID=mRNA_H-elongata_contig122962.1747.1|Name=mRNA_H-elongata_contig122962.1747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig122962:652..846+ (Himanthalia elongata Himel1 dioecious)
CAGGTAATGGAGCAGCAGACCGTCAGCATCGCGAAGGCCGGCATCACGAC
TACCCTCAACGCACGGGCGGCGGTGCTCGCGGCGGCCAACCCCTTGTACG
GACGGTATAACAAGAGACGGGCCATGAGCGAGAACATCAACCTCCCGAAC
TCGTTGTTGTCGCGGTTCGACCTCCTGTTCCTCATCCTCGACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig122962:652..846+

>mRNA_H-elongata_contig122962.1747.1 ID=mRNA_H-elongata_contig122962.1747.1|Name=mRNA_H-elongata_contig122962.1747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig122962:652..846+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGCAGACCGTCAGCATCGCGAAGGCCGGCATCACGACTACCCT
CAACGCACGGGCGGCGGTGCTCGCGGCGGCCAACCCCTTGTACGGACGGT
ATAACAAGAGACGGGCCATGAGCGAGAACATCAACCTCCCGAACTCGTTG
TTGTCGCGGTTCGACCTCCTGTTCCTCATCCTCGACAAGATGGAGCAGCA
GACCGTCAGCATCGCGAAGGCCGGCATCACGACTACCCTCAACGCACGGG
CGGCGGTGCTCGCGGCGGCCAACCCCTTGTACGGACGGTATAACAAGAGA
CGGGCCATGAGCGAGAACATCAACCTCCCGAACTCGTTGTTGTCGCGGTT
CGACCTCCTGTTCCTCATCCTCGACAAG
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