mRNA_H-elongata_contig122911.1744.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122911.1744.1
Unique NamemRNA_H-elongata_contig122911.1744.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122911.1744.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.910e-15
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 ASGCRCGDVLSVWTPNTAATVTTCGRLQAGFLSGVYNRHV-----ELQSKGDNVGYALARTVRSNIQHHASKAMGATGMGNQCRRG 243
            A GC C      W  +    +TTCGR QA  ++GV  +HV     E  S+GDNV Y LARTVR  +Q+ A++ +GA+G GNQCRRG
Sbjct:  109 AKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRG 194
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BLAST of mRNA_H-elongata_contig122911.1744.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.040e-13
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    1 ASGCRCGDVLSVWTPNTAATVTTCGRLQAGFLSGVYNRHV-----ELQSKGDNVGYALARTVRSNIQHHASKAMGATGMGNQCRRG 243
            A GC C   L+ W            R QA  ++GV  +HV        S+GDNV Y LARTVRSN+Q+ A++ +GATG GNQCRRG
Sbjct:   76 AQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122911.1744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.910e-1547.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.040e-1346.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122911contigH-elongata_contig122911:1197..1928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.6912866-CDS-H-elongata_contig122911:1196..13391622929723.6912866-CDS-H-elongata_contig122911:1196..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122911 1197..1339 -
1691679133.3645096-CDS-H-elongata_contig122911:1196..13391691679133.3645096-CDS-H-elongata_contig122911:1196..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122911 1197..1339 -
1622929723.7041917-CDS-H-elongata_contig122911:1828..19281622929723.7041917-CDS-H-elongata_contig122911:1828..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122911 1829..1928 -
1691679133.37398-CDS-H-elongata_contig122911:1828..19281691679133.37398-CDS-H-elongata_contig122911:1828..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122911 1829..1928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122911.1744.1prot_H-elongata_contig122911.1744.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122911 1197..1928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122911.1744.1

>prot_H-elongata_contig122911.1744.1 ID=prot_H-elongata_contig122911.1744.1|Name=mRNA_H-elongata_contig122911.1744.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
ASGCRCGDVLSVWTPNTAATVTTCGRLQAGFLSGVYNRHVELQSKGDNVG
YALARTVRSNIQHHASKAMGATGMGNQCRRG
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mRNA from alignment at H-elongata_contig122911:1197..1928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122911.1744.1 ID=mRNA_H-elongata_contig122911.1744.1|Name=mRNA_H-elongata_contig122911.1744.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig122911:1197..1928- (Himanthalia elongata Himel1 dioecious)
GCTTCGGGATGCCGTTGTGGGGATGTGCTAAGTGTGTGGACGCCGAACAC
GGCAGCAACTGTGACGACATGTGGCCGTCTACAGGCCGGCTTTCTATCTG
GTATAGACCTGGAGGTACGCACGTAGCAGTCTATCGATGCAAATTATAAA
TGCTATTGTATTGGTTGTAGAAGGCCTACGCCGAGCTTGAATATAATATT
CTACAGACAGTATATAATATGGGGATACATTTACTACTGTAAATATTATA
CATAATAGTATGCTTGATCGATCTGTACTGCTCTGTACGTATACTATTTG
TCACTATTTAGTACGTCCAGCGGCAGTGTCACACGCAGTGCTGCGGTATG
TCGTGCTGTAGGTAACATGATTGGCACATTGTTCCAATACTGTCTATTCT
AGGGATAAAAATAGAGAATAAATAATTGGTCCATGGGGGTACCTACTTGT
TAGTCTACATCCGTTACTATCTTGAGGATTATTGACTCAGTAGCGACAGA
CTATCGGTTGATAACGCCACCTGTACAAAATGCTGCGACCTGATGAAATA
GGGATTGGCCCATTTTTCTCATACACTTCGAATGTCAAGGTGTTTATAAC
CGCCACGTGGAACTGCAGTCGAAGGGTGACAACGTCGGATATGCCCTAGC
TCGCACGGTACGCTCTAACATCCAGCACCATGCGTCTAAGGCAATGGGTG
CCACGGGCATGGGCAACCAGTGCAGAAGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig122911:1197..1928-

>mRNA_H-elongata_contig122911.1744.1 ID=mRNA_H-elongata_contig122911.1744.1|Name=mRNA_H-elongata_contig122911.1744.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig122911:1197..1928- (Himanthalia elongata Himel1 dioecious)
GCTTCGGGATGCCGTTGTGGGGATGTGCTAAGTGTGTGGACGCCGAACAC
GGCAGCAACTGTGACGACATGTGGCCGTCTACAGGCCGGCTTTCTATCTG
GCTTCGGGATGCCGTTGTGGGGATGTGCTAAGTGTGTGGACGCCGAACAC
GGCAGCAACTGTGACGACATGTGGCCGTCTACAGGCCGGCTTTCTATCTG
GTGTTTATAACCGCCACGTGGAACTGCAGTCGAAGGGTGACAACGTCGGA
TATGCCCTAGCTCGCACGGTACGCTCTAACATCCAGCACCATGCGTCTAA
GGCAATGGGTGCCACGGGCATGGGCAACCAGTGCAGAAGGGGGGTGTTTA
TAACCGCCACGTGGAACTGCAGTCGAAGGGTGACAACGTCGGATATGCCC
TAGCTCGCACGGTACGCTCTAACATCCAGCACCATGCGTCTAAGGCAATG
GGTGCCACGGGCATGGGCAACCAGTGCAGAAGGGGG
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