mRNA_H-elongata_contig122843.1738.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122843.1738.1
Unique NamemRNA_H-elongata_contig122843.1738.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122843.1738.1 vs. uniprot
Match: A0A6H5KLE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.240e-22
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    1 GYFMFLPEWSLEPSTCLIFMGIVCGSGLRRFEVPYNKRVKREAILRDAIDHRSMSFTMLEKLAGKCTSMNVAAPLASLYTSHTYRTI 261
            GYF+ + +  L P+TCL+F+GI+C +   RFEVP +K  K +AIL DAI  + +SF MLEKL GKC S++VA P+A+LYT H Y+++
Sbjct:  267 GYFLSIKKSELSPTTCLVFLGIICDAERGRFEVPEDKLAKLDAILTDAISSQVISFQMLEKLVGKCVSLSVAVPVAALYTHHMYKSL 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122843.1738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLE3_9PHAE2.240e-2251.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122843contigH-elongata_contig122843:26..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.2399511-UTR-H-elongata_contig122843:25..341622929723.2399511-UTR-H-elongata_contig122843:25..34Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122843 26..34 +
1691679133.1862602-UTR-H-elongata_contig122843:25..341691679133.1862602-UTR-H-elongata_contig122843:25..34Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122843 26..34 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.2637846-CDS-H-elongata_contig122843:34..2891622929723.2637846-CDS-H-elongata_contig122843:34..289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122843 35..289 +
1691679133.193169-CDS-H-elongata_contig122843:34..2891691679133.193169-CDS-H-elongata_contig122843:34..289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122843 35..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122843.1738.1prot_H-elongata_contig122843.1738.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122843 35..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122843.1738.1

>prot_H-elongata_contig122843.1738.1 ID=prot_H-elongata_contig122843.1738.1|Name=mRNA_H-elongata_contig122843.1738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MFLPEWSLEPSTCLIFMGIVCGSGLRRFEVPYNKRVKREAILRDAIDHRS
MSFTMLEKLAGKCTSMNVAAPLASLYTSHTYRTIA
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mRNA from alignment at H-elongata_contig122843:26..289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122843.1738.1 ID=mRNA_H-elongata_contig122843.1738.1|Name=mRNA_H-elongata_contig122843.1738.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig122843:26..289+ (Himanthalia elongata Himel1 dioecious)
GGTTACTTCATGTTCTTGCCCGAGTGGTCACTAGAACCTAGTACATGCCT
CATATTCATGGGGATCGTTTGCGGCTCAGGCTTGCGCCGTTTCGAAGTCC
CGTATAATAAACGGGTGAAACGGGAGGCTATCTTACGCGATGCGATCGAC
CACAGATCGATGTCCTTCACAATGCTAGAGAAACTAGCAGGTAAGTGTAC
CAGTATGAATGTTGCCGCCCCACTGGCTAGTCTGTACACATCCCACACGT
ACCGTACCATAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig122843:26..289+

>mRNA_H-elongata_contig122843.1738.1 ID=mRNA_H-elongata_contig122843.1738.1|Name=mRNA_H-elongata_contig122843.1738.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig122843:26..289+ (Himanthalia elongata Himel1 dioecious)
ATGTTCTTGCCCGAGTGGTCACTAGAACCTAGTACATGCCTCATATTCAT
GGGGATCGTTTGCGGCTCAGGCTTGCGCCGTTTCGAAGTCCCGTATAATA
AACGGGTGAAACGGGAGGCTATCTTACGCGATGCGATCGACCACAGATCG
ATGTCCTTCACAATGCTAGAGAAACTAGCAGGTAAGTGTACCAGTATGAA
TGTTGCCGCCCCACTGGCTAGTCTGTACACATCCCACACGTACCGTACCA
TAGCAATGTTCTTGCCCGAGTGGTCACTAGAACCTAGTACATGCCTCATA
TTCATGGGGATCGTTTGCGGCTCAGGCTTGCGCCGTTTCGAAGTCCCGTA
TAATAAACGGGTGAAACGGGAGGCTATCTTACGCGATGCGATCGACCACA
GATCGATGTCCTTCACAATGCTAGAGAAACTAGCAGGTAAGTGTACCAGT
ATGAATGTTGCCGCCCCACTGGCTAGTCTGTACACATCCCACACGTACCG
TACCATAGCA
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