mRNA_H-elongata_contig122734.1733.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122734.1733.1
Unique NamemRNA_H-elongata_contig122734.1733.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 1.560e-110
Identity = 194/328 (59.15%), Postives = 219/328 (66.77%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRH----SRSAHEGDYFPAGPL-----------------------------------------GGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPSM+IAYNLCY+TILGKFDP+TGGTSG LG LPYPE+ TS AL +A ++HQ+W K+                              T  ++  V      S + H     P GP                                           G   WDPRC+H+A N AGFCHPSLRQGILP+MLREILETRVM+KGAM+RAE AGQRVLARTLNARQ+ALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAAR VD+H+ W ASVVYGDTDSLFIEL GRSLEEAHRIG+E+A+ VS+SCPPDV+LKFEKV
Sbjct: 2321 SLYPSMMIAYNLCYTTILGKFDPKTGGTSGSLGALPYPESNTSAALERAAEAHQAWRKRDGRTRSPLAAGRGASQQPPLSCLSPVDEEETPTNAAGVAARSPASSATHPTMETPTGPAVEAEPRSSPHPEDDAKHGDTQGSTPSDDHGGEGFPPRSRDREGMPGWDPRCIHLAPNTAGFCHPSLRQGILPVMLREILETRVMIKGAMRRAEGAGQRVLARTLNARQFALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARTVDTHKTWQASVVYGDTDSLFIELKGRSLEEAHRIGKEMATTVSQSCPPDVVLKFEKV 2648          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 4.710e-109
Identity = 213/347 (61.38%), Postives = 237/347 (68.30%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGS--------------------TQVSSQAVRH--SRSAHEGDYFPAGPLG------------------------------------------GNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPSM+IAYNLCY+TILGKFDP+TGGTSG LG LPYPE+ TS AL +A ++HQ+W K+       XXXXXXXXXXXXXXXX     G                     T  +  A R   S + H     PAGP                                            G   WDPRC+H+A N AGFCHPSLRQGILPLMLREILETRVM+KGAM+RAE AGQRVLARTLNARQ+ALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAAR VD+H+ W ASVVYGDTDSLFIEL GRSLE+AHRIG+E+A+ VS+SCPPDV+LKFEKV
Sbjct: 2426 SLYPSMMIAYNLCYTTILGKFDPKTGGTSGNLGALPYPESNTSAALERAAEAHQAWGKRDGRSNDHXXXXXXXXXXXXXXXXSPLATGRGGSQQPPLSHLSPVDEEETPTSAAGMAERSPASSATHPAMETPAGPXXXXXXXGSSPQPEDDAKQGDTQGSTPSDDHGGEGFSPRSRGKEGMPGWDPRCIHLAPNTAGFCHPSLRQGILPLMLREILETRVMIKGAMRRAEGAGQRVLARTLNARQFALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARTVDNHKTWQASVVYGDTDSLFIELKGRSLEDAHRIGKEMATTVSKSCPPDVVLKFEKV 2772          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A835YMN6_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMN6_9STRA)

HSP 1 Score: 228 bits (580), Expect = 1.860e-65
Identity = 140/285 (49.12%), Postives = 165/285 (57.89%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGKFDPRTGG--TSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPSM+IAYNLC+STI+G+ D    G  T+ + GV P                                                   G++  SS+                GP            +V+ N A FC    R G+LP MLRE+LETR+MVKGAMKRA   G+RVL RTL+ARQ+ALKMISNVTYGYTAAG+SGRMPMAELADAIVE GR TL AA RMV+SH  W A VVYGDTDSLF+ L GRS EEA R+G+EIA+AV+ S PP V+LK EKV
Sbjct:  280 SLYPSMVIAYNLCFSTIMGRLDLSDAGHTTTDRAGVDP--------------------------------------------------AGTSPPSSEGTSEG-----------GP------------YVSPNGAVFCSTDQRVGVLPRMLRELLETRIMVKGAMKRARDRGERVLERTLDARQFALKMISNVTYGYTAAGYSGRMPMAELADAIVECGRATLEAAIRMVESHPPWGARVVYGDTDSLFVLLEGRSTEEAFRVGKEIAAAVTRSNPPAVVLKLEKV 491          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A2K3DDR6_CHLRE (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDR6_CHLRE)

HSP 1 Score: 214 bits (545), Expect = 2.770e-59
Identity = 139/289 (48.10%), Postives = 171/289 (59.17%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGK-FDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEK-----KHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPS +IAYNLCYST +G+    R GGT  +LGV  Y     +V  A A +++          +H           XXXXXXX         G          +  +A+  D     P  G     P  + ++ N   +  P +R G+LP MLREIL+TRVM+KGAMK+      +VL R LNARQ+ LKMI+NV+YGYTAAGFSGRMP AELADAIV+SGRQTL  A  MV+SH  W A VVYGDTDS+F+ L GRS +EA RIG EIA AV+ + P  V LK EKV
Sbjct: 5484 SLYPSQVIAYNLCYSTCVGRPMHARAGGTPVRLGVTQYSYPVGAVLPAGANNNNSXXXXXXXXPQHGGSQLAGRGAAXXXXXXXHQQEDQGAAGQXXXXXXXXXNDDAANN-DAGEEAPAAGTAT--PEDLVISPNGVAYVSPQVRPGVLPRMLREILDTRVMIKGAMKKVPPE-DKVLLRVLNARQFGLKMIANVSYGYTAAGFSGRMPFAELADAIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMFVLLQGRSRKEAFRIGAEIARAVTAANPSPVTLKMEKV 5768          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A7S3VKE1_DUNTE (DNA polymerase (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKE1_DUNTE)

HSP 1 Score: 209 bits (533), Expect = 7.770e-58
Identity = 136/299 (45.48%), Postives = 163/299 (54.52%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGK-FDPRTGGTSGKLGVLPYPEAKTSV------------ALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAH---EGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPS IIAYNLCYST +G+    R G  +  L                        AL  A          H                                  Q +R   +++    G   P GPL      DP+ + V  N  GF   S R G+LP ML EIL+TRVMVKGAMKR   A  + LARTL+ARQ+ALK+I+NVTYGYTAAG+SGRMP AELADAIV+SGRQTL  A  MV++H  W A VVYGDTDS+F+ LPGR+ EEA RIG EIA+ ++E+ P  V LKFEKV
Sbjct:  551 SLYPSQIIAYNLCYSTCIGRPAHARAGAAAAALKAQXXXXXXXXXXXRATDCGAGVGALGPAAXXXXXXXAPHAYAEGNGGHAEEADAGLAGNGLP-----------QGLRFGCTSYLLPYGSLSPDGPL------DPQDLVVTPNGVGFVDASTRPGVLPRMLSEILDTRVMVKGAMKRLTPA-DKALARTLDARQFALKLIANVTYGYTAAGYSGRMPFAELADAIVQSGRQTLENAIAMVEAHPKWRAHVVYGDTDSMFVHLPGRTREEAFRIGAEIAACITEANPSPVTLKFEKV 831          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A699ZWA4_HAELA (DNA polymerase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZWA4_HAELA)

HSP 1 Score: 200 bits (509), Expect = 4.160e-57
Identity = 130/283 (45.94%), Postives = 156/283 (55.12%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPS +IAYNLCYST LG+      G           +A  ++A A +     +  K                             G+  V  +    S +   G     GPL      DP  + +A N   +   S+R G+LP ML E+L TRVM K AMKR   A  RVL R LNARQ  LK+ISNVTYGYT+AGFSGRMP AELAD+IV+SGRQTL  A R+V+ H  W A VVYGDTDSLF+ LPGRS EEA  +G EIA+AV+   PP V LK EKV
Sbjct:  242 SLYPSQMIAYNLCYSTCLGRPSHVRAG-----------QAAAALASADSGTDPAAGAKA-------------------------GTAGAAGVGVRLGVTSYAVPPGVMTAGGPL------DPDSLVIAPNGVAYAPASVRPGVLPRMLSELLNTRVMTKAAMKRH--AVDRVLQRVLNARQMGLKLISNVTYGYTSAGFSGRMPFAELADSIVQSGRQTLENAIRLVEGHPHWKARVVYGDTDSLFVLLPGRSREEAFVVGAEIAAAVTACNPPPVTLKMEKV 480          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A813A9Q7_9DINO (DNA-directed DNA polymerase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A9Q7_9DINO)

HSP 1 Score: 195 bits (496), Expect = 4.850e-57
Identity = 122/283 (43.11%), Postives = 156/283 (55.12%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPS++IAYN+CYST LG+  PR  G         +    TS         H S + K                           +G  + S  +    R+A +                     +A N A F    +R+G+LPLML +ILETRVMVK AMKR EA    VL R L+ARQ+ALKMI+NVTYGYT+AGFSGRMP AE+ADAIV + R+TL+A+ R +++ + W A VVYGDTDS+F+ L GRS  EA RIG EIA  +S+  P  + LK EKV
Sbjct:   26 SLYPSIVIAYNMCYSTCLGRLSPRQVGKW-------FERCSTS--------RHISCQGK-----------------------LNEKLGFLEYSPPSAGLERAAKD-------------------AFIAPNGAVFVSRHVRRGVLPLMLNDILETRVMVKNAMKRKEAVNDPVLTRILHARQFALKMIANVTYGYTSAGFSGRMPCAEIADAIVHTARRTLLASMRTIEARKEWGARVVYGDTDSMFVLLEGRSTSEAFRIGNEIADTISDMNPNPMKLKMEKV 251          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A835WRV5_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WRV5_9CHLO)

HSP 1 Score: 207 bits (528), Expect = 5.220e-57
Identity = 153/301 (50.83%), Postives = 181/301 (60.13%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGK-FDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHS-------RSAHE----------GDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPS +IAYNLCYST +G+    R GGT  +LGV  Y    ++V  A A           XX    XXXXXXXXXXXXXXXX          +  A RH        R A E          GD   A    G     P  + ++ N   +  P +R G+LP MLREIL+TRVM+KGAMK+      +VL R LNARQ+ LKMI+NV+YGYTAAGFSGRMP AELAD+IV+SGRQTL  A  MV+SH  W A VVYGDTDS+F+ L GRS +EA RIG EIA AV+ + P  V LK EKV
Sbjct: 5391 SLYPSQVIAYNLCYSTCVGRPMHARAGGTPVRLGVTQYSYPVSAVLPAAAAXXXXXXXXXXXXNLPQXXXXXXXXXXXXXXXXGRAGQEPGAGADAADRHMGPGPQQPRPAGEDMANNDLGCCGDGLVAAAEAGTA--SPEDLVISPNGVAYVPPEVRPGVLPRMLREILDTRVMIKGAMKKVPPE-DKVLLRVLNARQFGLKMIANVSYGYTAAGFSGRMPFAELADSIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMFVLLQGRSRKEAFRIGAEIARAVTAANPSPVTLKMEKV 5688          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A699Z3X2_HAELA (DNA polymerase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z3X2_HAELA)

HSP 1 Score: 201 bits (510), Expect = 6.100e-57
Identity = 130/283 (45.94%), Postives = 156/283 (55.12%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPS +IAYNLCYST LG+      G           +A  ++A A +     +  K                             G+  V  +    S +   G     GPL      DP  + +A N   +   S+R G+LP ML E+L TRVM K AMKR   A  RVL R LNARQ  LK+ISNVTYGYT+AGFSGRMP AELAD+IV+SGRQTL  A R+V+ H  W A VVYGDTDSLF+ LPGRS E+A  IG EIA+AV+   PP V LK EKV
Sbjct:  249 SLYPSQMIAYNLCYSTCLGRPSHVRAG-----------QAAAALASADSGTDPAAGAKA-------------------------GTAGAAGVGVRLGVTSYAVPPGVMTAGGPL------DPDSLVIAPNGVAYAPASVRPGVLPRMLSELLNTRVMTKAAMKRH--AADRVLQRVLNARQMGLKLISNVTYGYTSAGFSGRMPFAELADSIVQSGRQTLENAIRLVEGHPHWKARVVYGDTDSLFVLLPGRSREDAFVIGAEIAAAVTACNPPPVTLKMEKV 487          
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Match: A0A2P6TTN7_CHLSO (DNA polymerase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTN7_CHLSO)

HSP 1 Score: 204 bits (519), Expect = 7.720e-56
Identity = 130/283 (45.94%), Postives = 156/283 (55.12%), Query Frame = 1
Query:    1 SLYPSMIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQSWEKKHXXXXXXXXXXXXXXXXXXXXXXXXXXVGSTQVSSQAVRHSRSAHEGDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETRVMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPMAELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLEEAHRIGREIASAVSESCPPDVILKFEKV 849
            SLYPSMIIAYNLC+ST +G+    T G  G L  LP                                                  +G T+                  P G L G +   P  + VA N   F     R G+LP +L+EIL TR+MVKGAMKRA  + + VL R LNARQ+ LK+I+NVTYGYTAAGFSGRMPMA+LADAIV+SGR+TL  A RMV++H  W A VVYGDTDS+F+ LPGRS  EA RIG EIA  V+ + PP V+LK EKV
Sbjct: 1424 SLYPSMIIAYNLCFSTCMGRPSHATAGARGDL--LPK-------------------------------------------------LGCTEFG---------------LPPGTLTGALA--PEKLVVAPNGVAFAPKEARPGVLPRLLQEILNTRIMVKGAMKRAPKSAK-VLLRCLNARQFGLKLIANVTYGYTAAGFSGRMPMAQLADAIVQSGRETLENAIRMVNNHPEWRAQVVYGDTDSMFVLLPGRSRAEAFRIGEEIAREVTAANPPPVMLKMEKV 1637          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122734.1733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0N9_9PHAE1.560e-11059.15DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
D7G846_ECTSI4.710e-10961.38DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A835YMN6_9STRA1.860e-6549.12DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A2K3DDR6_CHLRE2.770e-5948.10DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]
A0A7S3VKE1_DUNTE7.770e-5845.48DNA polymerase (Fragment) n=1 Tax=Dunaliella terti... [more]
A0A699ZWA4_HAELA4.160e-5745.94DNA polymerase (Fragment) n=1 Tax=Haematococcus la... [more]
A0A813A9Q7_9DINO4.850e-5743.11DNA-directed DNA polymerase n=1 Tax=Symbiodinium s... [more]
A0A835WRV5_9CHLO5.220e-5750.83DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]
A0A699Z3X2_HAELA6.100e-5745.94DNA polymerase (Fragment) n=1 Tax=Haematococcus la... [more]
A0A2P6TTN7_CHLSO7.720e-5645.94DNA polymerase n=1 Tax=Chlorella sorokiniana TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122734contigH-elongata_contig122734:181..1898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.8
Seed ortholog evalue4.7e-93
Seed eggNOG ortholog2880.D7G846
Preferred nameAHDC1
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA polymerase activity
EggNOG OGsCOG0417@1,KOG0968@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size870
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122734.1733.1prot_H-elongata_contig122734.1733.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122734 181..1883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929722.8754227-CDS-H-elongata_contig122734:180..3721622929722.8754227-CDS-H-elongata_contig122734:180..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122734 181..372 -
1691679133.0342577-CDS-H-elongata_contig122734:180..3721691679133.0342577-CDS-H-elongata_contig122734:180..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122734 181..372 -
1622929722.8866947-CDS-H-elongata_contig122734:717..8171622929722.8866947-CDS-H-elongata_contig122734:717..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122734 718..817 -
1691679133.046757-CDS-H-elongata_contig122734:717..8171691679133.046757-CDS-H-elongata_contig122734:717..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122734 718..817 -
1622929722.8974562-CDS-H-elongata_contig122734:1320..18831622929722.8974562-CDS-H-elongata_contig122734:1320..1883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122734 1321..1883 -
1691679133.058034-CDS-H-elongata_contig122734:1320..18831691679133.058034-CDS-H-elongata_contig122734:1320..1883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122734 1321..1883 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929722.9155512-UTR-H-elongata_contig122734:1883..18981622929722.9155512-UTR-H-elongata_contig122734:1883..1898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122734 1884..1898 -
1691679133.0656252-UTR-H-elongata_contig122734:1883..18981691679133.0656252-UTR-H-elongata_contig122734:1883..1898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122734 1884..1898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122734.1733.1

>prot_H-elongata_contig122734.1733.1 ID=prot_H-elongata_contig122734.1733.1|Name=mRNA_H-elongata_contig122734.1733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
MIIAYNLCYSTILGKFDPRTGGTSGKLGVLPYPEAKTSVALAQAKDSHQS
WEKKHHRGASSSRRSFSQAAPSSSGSSSGGGVGSTQVSSQAVRHSRSAHE
GDYFPAGPLGGNMRWDPRCVHVAANAAGFCHPSLRQGILPLMLREILETR
VMVKGAMKRAEAAGQRVLARTLNARQYALKMISNVTYGYTAAGFSGRMPM
AELADAIVESGRQTLIAAARMVDSHEAWHASVVYGDTDSLFIELPGRSLE
EAHRIGREIASAVSESCPPDVILKFEKVKITLMP*
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mRNA from alignment at H-elongata_contig122734:181..1898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122734.1733.1 ID=mRNA_H-elongata_contig122734.1733.1|Name=mRNA_H-elongata_contig122734.1733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1718bp|location=Sequence derived from alignment at H-elongata_contig122734:181..1898- (Himanthalia elongata Himel1 dioecious)
TCCCTCTACCCATCCATGATCATCGCCTACAACCTCTGCTACTCCACGAT CCTGGGGAAGTTCGACCCCAGGACCGGGGGAACCTCGGGAAAGCTCGGTG TCCTACCCTACCCGGAGGCGAAGACCTCGGTAGCTCTAGCCCAAGCGAAA GATTCGCACCAGTCCTGGGAGAAAAAACACCACCGCGGCGCGTCTTCCTC CCGGAGATCGTTTTCGCAAGCCGCACCCAGCAGCAGCGGCAGCAGCAGTG GTGGTGGCGTAGGAAGCACGCAAGTTTCTTCACAAGCTGTCCGCCACAGT CGGTCCGCCCACGAAGGAGATTATTTCCCTGCGGGACCGCTCGGAGGAAA TATGCGGTGGGATCCGCGCTGCGTCCACGTGGCGGCTAACGCGGCGGGTT TCTGTCACCCTTCCCTGAGGCAGGGAATCCTGCCCCTCATGTTGAGAGAG ATTCTGGAGACTCGGGTTATGGTGAAGGGAGCGATGAAGCGAGCCGAGGC GGCCGGGCAGCGGGTATTGGCGCGGACGCTGAACGCCCGGCAGTACGCGC TCAAGATGATCTCCAACGTCACCTACGGGTAAGAGTAAGAAGATAATGCC TCATTACCCACTTCAACCCTCGGGGCATTGGTTCATGCTCCCCCCGATCT CAATATATATTCTCAGCTGCGCCGTTGAAGGTATATGTCGTCGAAAAAAT CCCAGAAAACGAAATTATTTTTGTGCCGCTAATGGCGGTAAAAAATGGGA GATATATAATTTTCCCCTGGTGGAAACTTTCTTTACAGAAATGATGGGAT TGCTCCTTCTATTTGAAGTCGTCGTGCGCTTTATTCGTGTAGTCCTAGGA GATGTTACGCCGACACGTTTAATTTTATTGACGCAAGAGGCCTTCAAATG CTGCTGCGTCATGTCAGTCTTTCGGCGTGTTCGCAGATCGTGATGTTTCC ACTGTAGACGATGATCACCGCGCAGATTCGACGTTTGGCCTGCTACTGCT TGTGTGCAACAACGAAAGAAAACTCACGATGCGTCAGCCTTCGCTCTACC TTTTGTTTTTGATTGGGTGATCCTTTAAAAGGTACACGGCAGCGGGGTTC AGTGGGCGGATGCCAATGGCGGAGCTGGCTGACGCGATCGTCGAGAGCGG CCGGCAAACGTTGATCGCGGCGGCAAGGATGGTGAGCGGGTGAAACAGTA CACCTACGAGAACGTCCCGTGGGGATATGTATTTTCTAACGTAGCCCCTC TTGCCCCGTCCTCCCTAGGACGCGTGGTCAACGGTCTAACAGCTAAGACA TGCAAAAGATTAGTACGCCACAGCTCCCTCCCCCCCCGCCTCTTTTTCAC AATATATATTTCTGAGCAAGCACCCGCTGCAACGGGGGAAAAGTAAGAAA CATGGGCGGGGGGGGGGAGCTCTTCCCGGAGAGGAAAAGGACCATTACGG GAGAAGGCTCGGATGAGGCCTCGCTTAAGCATTGCCACTGCTGCAACGCA TAGTGGTTTGTTCCGCAACCGGGCAGGTGGACAGTCACGAGGCTTGGCAT GCATCGGTTGTGTACGGGGACACGGACTCTTTGTTCATCGAGCTTCCCGG CCGCAGCCTTGAGGAGGCGCACCGCATCGGGAGGGAAATAGCCTCTGCGG TTTCCGAGTCCTGCCCGCCGGACGTGATCCTCAAGTTCGAGAAGGTGAAG ATAACGTTGATGCCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig122734:181..1898-

>mRNA_H-elongata_contig122734.1733.1 ID=mRNA_H-elongata_contig122734.1733.1|Name=mRNA_H-elongata_contig122734.1733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig122734:181..1898- (Himanthalia elongata Himel1 dioecious)
ATGATCATCGCCTACAACCTCTGCTACTCCACGATCCTGGGGAAGTTCGA
CCCCAGGACCGGGGGAACCTCGGGAAAGCTCGGTGTCCTACCCTACCCGG
AGGCGAAGACCTCGGTAGCTCTAGCCCAAGCGAAAGATTCGCACCAGTCC
TGGGAGAAAAAACACCACCGCGGCGCGTCTTCCTCCCGGAGATCGTTTTC
GCAAGCCGCACCCAGCAGCAGCGGCAGCAGCAGTGGTGGTGGCGTAGGAA
GCACGCAAGTTTCTTCACAAGCTGTCCGCCACAGTCGGTCCGCCCACGAA
GGAGATTATTTCCCTGCGGGACCGCTCGGAGGAAATATGCGGTGGGATCC
GCGCTGCGTCCACGTGGCGGCTAACGCGGCGGGTTTCTGTCACCCTTCCC
TGAGGCAGGGAATCCTGCCCCTCATGTTGAGAGAGATTCTGGAGACTCGG
GTTATGGTGAAGGGAGCGATGAAGCGAGCCGAGGCGGCCGGGCAGCGGGT
ATTGGCGCGGACGCTGAACGCCCGGCAGTACGCGCTCAAGATGATCTCCA
ACGTCACCTACGGATGATCATCGCCTACAACCTCTGCTACTCCACGATCC
TGGGGAAGTTCGACCCCAGGACCGGGGGAACCTCGGGAAAGCTCGGTGTC
CTACCCTACCCGGAGGCGAAGACCTCGGTAGCTCTAGCCCAAGCGAAAGA
TTCGCACCAGTCCTGGGAGAAAAAACACCACCGCGGCGCGTCTTCCTCCC
GGAGATCGTTTTCGCAAGCCGCACCCAGCAGCAGCGGCAGCAGCAGTGGT
GGTGGCGTAGGAAGCACGCAAGTTTCTTCACAAGCTGTCCGCCACAGTCG
GTCCGCCCACGAAGGAGATTATTTCCCTGCGGGACCGCTCGGAGGAAATA
TGCGGTGGGATCCGCGCTGCGTCCACGTGGCGGCTAACGCGGCGGGTTTC
TGTCACCCTTCCCTGAGGCAGGGAATCCTGCCCCTCATGTTGAGAGAGAT
TCTGGAGACTCGGGTTATGGTGAAGGGAGCGATGAAGCGAGCCGAGGCGG
CCGGGCAGCGGGTATTGGCGCGGACGCTGAACGCCCGGCAGTACGCGCTC
AAGATGATCTCCAACGTCACCTACGGGTACACGGCAGCGGGGTTCAGTGG
GCGGATGCCAATGGCGGAGCTGGCTGACGCGATCGTCGAGAGCGGCCGGC
AAACGTTGATCGCGGCGGCAAGGATGGTACACGGCAGCGGGGTTCAGTGG
GCGGATGCCAATGGCGGAGCTGGCTGACGCGATCGTCGAGAGCGGCCGGC
AAACGTTGATCGCGGCGGCAAGGATGGTGGACAGTCACGAGGCTTGGCAT
GCATCGGTTGTGTACGGGGACACGGACTCTTTGTTCATCGAGCTTCCCGG
CCGCAGCCTTGAGGAGGCGCACCGCATCGGGAGGGAAATAGCCTCTGCGG
TTTCCGAGTCCTGCCCGCCGGACGTGATCCTCAAGTTCGAGAAGGTGAAG
ATAACGTTGATGCCGTGAGTGGACAGTCACGAGGCTTGGCATGCATCGGT
TGTGTACGGGGACACGGACTCTTTGTTCATCGAGCTTCCCGGCCGCAGCC
TTGAGGAGGCGCACCGCATCGGGAGGGAAATAGCCTCTGCGGTTTCCGAG
TCCTGCCCGCCGGACGTGATCCTCAAGTTCGAGAAGGTGAAGATAACGTT
GATGCCGTGA
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