mRNA_H-elongata_contig12271.1732.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12271.1732.1
Unique NamemRNA_H-elongata_contig12271.1732.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A6H5KFS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS4_9PHAE)

HSP 1 Score: 434 bits (1117), Expect = 3.880e-149
Identity = 220/269 (81.78%), Postives = 235/269 (87.36%), Query Frame = 1
Query:   10 RGARSTGVTGGDDHKEQAGSAKGG--QYAHVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
            RG + +  T    H   AG   G   QY+HVFRMIEQHSLFD VQ      DRVLQ+I LDREL GELLLRHPEKF+VSSV  QL G+RDLQHWYLG+LFDRSPEMYG+QEYAP+HALQVSLLAEFAPPFERGRPP Y SAFLRFLR +GFAPLEAALRECGKRRPPLYDEMAYILGRMG+TRRALTILLEEVGSVPRAIEFVE+HDKDLWYRLIEHSLK+E FLSGLLDHAGVYDVDL RLVAEIPKGM+IPGLRDK+VKIISDYHFQ
Sbjct:   53 RGRQGSSATPSITHGVGAGDGAGSEAQYSHVFRMIEQHSLFDAVQ------DRVLQLIRLDRELTGELLLRHPEKFSVSSVVAQLNGRRDLQHWYLGLLFDRSPEMYGAQEYAPYHALQVSLLAEFAPPFERGRPPAYTSAFLRFLRPTGFAPLEAALRECGKRRPPLYDEMAYILGRMGDTRRALTILLEEVGSVPRAIEFVEAHDKDLWYRLIEHSLKSETFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQ 315          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: D7FS06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS06_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 7.790e-144
Identity = 215/249 (86.35%), Postives = 228/249 (91.57%), Query Frame = 1
Query:   64 GSAKGGQYAHVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
            G+    QY HVFRMIEQHSLFD VQ      DRVLQ+I LDREL GELLLRHPEKF+VSSV  QL+G+RDLQHWYLG+LFDRSPEMYG+QEYAPFHALQVSLLAEFAPPFERGRPP Y SAFLRFLR +GFAPLEAALRECGKRRPPLYDEMAYILGRMG+TRRALTILLEEVGSVPRAIEFVE+HDKDLWYRLIEHSLK+E FLSGLLDHAGVYDVDL RLVAEIPKGM+IPGLRDK+VKIISDYHFQ
Sbjct:  651 GAGSEAQYGHVFRMIEQHSLFDAVQ------DRVLQLIRLDRELTGELLLRHPEKFSVSSVVSQLKGRRDLQHWYLGLLFDRSPEMYGAQEYAPFHALQVSLLAEFAPPFERGRPPAYTSAFLRFLRPTGFAPLEAALRECGKRRPPLYDEMAYILGRMGDTRRALTILLEEVGSVPRAIEFVEAHDKDLWYRLIEHSLKSETFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQ 893          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A836CBT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT2_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.890e-65
Identity = 131/266 (49.25%), Postives = 159/266 (59.77%), Query Frame = 1
Query:   88 AHVFRMIEQHSLFDTVQAR--------------------DNHTD-----------------------RVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDL------------QHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDL 720
            AHVF++IEQHSLF  +Q R                      H +                       RVL++I L +  AG LL+RH +K   + V  QL G+RDL            QHWYL +LF ++PE+Y + E+A FHALQVSL A+FAPPF+  RPPPY+S FLRFLRGS FAPLEAAL EC KRRPPL+DEM            AL++LLEEV    RAIEFV +HDKDLWYRLI++SL+NE FL GLLDHAGVY + L
Sbjct: 1010 AHVFKLIEQHSLFRAIQGRVRELVQLSQAGAIQIPSSSPRRHANAKILTSSAYSSILRIVLRAAVHFRVLELIQLSQADAGALLVRHVDKLPAAQVVPQLRGRRDLXXXXXXXXXXXXQHWYLHLLFTQAPELYNTPEHAQFHALQVSLYAQFAPPFQPRRPPPYDSDFLRFLRGSAFAPLEAALTECEKRRPPLWDEMV-----------ALSVLLEEVDCARRAIEFVGAHDKDLWYRLIDYSLRNERFLGGLLDHAGVYTLVL 1264          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: F0XVF2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF2_AURAN)

HSP 1 Score: 172 bits (436), Expect = 4.690e-45
Identity = 94/241 (39.00%), Postives = 135/241 (56.02%), Query Frame = 1
Query:   94 VFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRD---LQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPP---YNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISD 798
            VF ++E   L++ V+      DRV  +     E A +LL++H ++F +  V  QL  + D    + WYL   F R P++Y S ++   H     L A   P  +     P   Y+S  LRFLR S F PL  A   C  +  PLYDEM ++LG+ G T  AL +LL+++GSV RA+ FVE+HD+ LW  LI H+L++  FL  LLD AG   +D+  L+ +IP+G  +PGLRDKL  +  D
Sbjct:  592 VFDLVEAQRLYEDVR------DRVATLRAFSEERAADLLVKHVDEFPLGDVDDQLAREEDGGAARLWYLRTCFARLPDLYASADHRARHGDHARLYARLGPVPDAASAGPRADYDSEMLRFLRWSSFVPLTEAYDACAAQEAPLYDEMVWVLGKTGKTAEALALLLDKIGSVKRAVRFVEAHDRSLWSTLIRHALRDARFLGELLDDAGSSSLDVGALLHQIPEGTRVPGLRDKLANVFQD 826          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A5D6XHY4_9STRA (RING-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHY4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.280e-43
Identity = 94/240 (39.17%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
            H F++I +H L+  VQ       +V  ++ +DR  A  +L+   E+  V  +  QLE  R+L H YL  LF   P  Y ++ YAP H  QV+L AEFAP F            LRFL+ S F PLE A   C +R PPL+D M YILGRMG  +RAL ++L ++  +  AI FV+ +D  LW  +I+ SL ++A +  LL  A  + +D  +L+ +IP+ M I  L+ KL+ II++Y  Q
Sbjct:  650 HAFKLITEHQLWPLVQ------HKVANLMQIDRASAVRMLVAQTEQLKVPDIVKQLEHDRELLHEYLHELFVLRPSEYNAEAYAPLHEAQVALYAEFAPAF-----------LLRFLQTSNFVPLEKAYTYCSERNPPLWDAMIYILGRMGQHKRALDLILTQLHDIHHAIRFVQENDASLWDYVIDLSLTSQANVEQLLQFASQHKIDPIKLIRKIPEDMPIDNLKAKLLDIIANYRIQ 872          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A067BPI1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BPI1_SAPPC)

HSP 1 Score: 167 bits (424), Expect = 1.580e-43
Identity = 92/242 (38.02%), Postives = 148/242 (61.16%), Query Frame = 1
Query:   91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRH--PEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
            H F++I +H+L+D+VQ      ++V+ ++ +DR+ A  +L+     ++  V ++  QLE KR+L H YL  LF      Y + +Y+  H +QV+L AEFAP              LRFL+ S F PLE A + C +R PPL+D M +ILGRMG  ++AL  ++ ++ +V +AI+FVE HD  LW  LIE SL +   +  LL++A  + +D  +++ +IP+ M I GL+DK+++II++Y  Q
Sbjct:  567 HAFKLIVEHNLWDSVQ------NKVVNLMLIDRDAALRMLVHQIKSDELKVHAIVKQLEHKRELLHEYLHNLFVHRLVDYNTDKYSSLHEMQVALYAEFAP-----------HVLLRFLQTSSFVPLEKAYKFCSERSPPLWDAMVFILGRMGQHKKALDFIMTQLKNVKQAIQFVEDHDSGLWDYLIEISLSHTECMEELLEYACDHKIDPIKVMQKIPEDMEIAGLKDKVLQIITNYRIQ 791          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A485LHE2_9STRA (Aste57867_21416 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHE2_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.240e-43
Identity = 92/242 (38.02%), Postives = 150/242 (61.98%), Query Frame = 1
Query:   91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRH--PEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
            H F++I +H+L+ ++Q      ++V+ ++ +DRE A  +L+     ++  VS++  QLE KR+L H YL  LF      Y ++ YA  H LQVSL AEFAP +            L+FL+ S F PLE A + C +R PPL+D M +ILGRMG  ++AL  ++ ++ +V +AI+FV+ +D +LW  LIE SL N+ ++  LL++A  + +D  +++ +IP+ M I GL+ K+ +II++Y  Q
Sbjct:  597 HAFKLIVEHNLWASIQ------NKVVNLMMIDRESALRMLVHQIKSDQLKVSAIVKQLEHKRELLHEYLHNLFVHRLADYNTESYASLHELQVSLYAEFAPNY-----------LLKFLQTSAFVPLERAYKFCSERSPPLWDAMIFILGRMGQHKKALDFIMTQLQNVKQAIQFVQDNDDELWDYLIEISLTNKEYIEELLEYACDHKIDPIKVMRKIPEDMEIAGLKTKVQQIIANYRIQ 821          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A1V9Y531_9STRA (Vacuolar protein sorting-associated protein 41 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y531_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.610e-42
Identity = 89/242 (36.78%), Postives = 145/242 (59.92%), Query Frame = 1
Query:   91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRH--PEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
            H F++I +H L+D +Q       +V+ ++ +DR+ A  +L+     ++  V ++  QLE KR+L H YL  LF      Y ++ Y+  H LQV+L AEFAP              LRFL+ + F PLE A + C +R PPL+D M +ILGRMG  ++AL  ++ ++ +V +A+++V+ HD  LW  L+E SL ++  ++ LL HA  + +D  +++ +IP+ M IPGL+ K+ +IIS+Y  Q
Sbjct:  577 HAFKLIVEHGLWDAIQ------HKVVNLMLIDRDGAMRMLVHQVKADELKVHAIVKQLEHKRELLHEYLHNLFVHRLVDYNTERYSSLHELQVALYAEFAP-----------QMLLRFLQTTSFVPLEKAYKFCSERSPPLWDAMVFILGRMGQHKKALDFIMTQLQNVQQAVQYVQDHDPGLWDYLLEISLAHKESMAELLAHACDHTIDPIKVIKKIPEDMEIPGLKAKVTQIISNYRIQ 801          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A1V9YI15_9STRA (Vacuolar protein sorting-associated protein 41 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YI15_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.320e-41
Identity = 91/246 (36.99%), Postives = 150/246 (60.98%), Query Frame = 1
Query:   91 HVFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRH--PEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAE----IPKGMYIPGLRDKLVKIISDYHFQ 810
            H F++I +H+L++++Q      ++V+ ++ +DR+ A  +L+     ++  V S+  QLE KR+L H YL  LF      Y ++ Y+  H LQ+SL AEFAP F            LRFL+ S F PLE A + C +R PPL+D M +ILGRMG  ++AL  ++ ++ +V +AI+FV+ +D  LW  LIE SL ++ F++ LL++A  + +D  +++ +    IP+ M I GL+ K+ +II++Y  Q
Sbjct:  590 HAFKLIVEHNLWESIQ------NKVVNLMLIDRDAAIRMLVHQIKSDELKVHSIVKQLEHKRELLHEYLHNLFVHRLVDYNTERYSSLHELQISLYAEFAPHF-----------LLRFLQTSSFVPLEKAYKFCSERSPPLWDAMVFILGRMGQHKKALDFIMTQLKNVKQAIQFVQDNDNALWDYLIEISLTHKDFMAELLEYACEHKIDPIKVIKKVQDAIPEDMEITGLKSKVQQIITNYRIQ 818          
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Match: A0A2P6NGE3_9EUKA (RING zinc finger-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NGE3_9EUKA)

HSP 1 Score: 161 bits (408), Expect = 2.530e-41
Identity = 99/241 (41.08%), Postives = 143/241 (59.34%), Query Frame = 1
Query:   94 VFRMIEQHSLFDTVQARDNHTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGMLFDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLR-FLRGSGFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRAIEFVE-SHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKGMYIPGLRDKLVKIISDYHFQ 810
             F  IEQ+ LFD+++      D+V  ++  D + A ++L+ H E+  ++ V  QL G   + H YL  LF++ P +   Q Y   H +QV+L AE            YN  FL  FL+ S +  LE A + C  ++   Y EM YILGRMG  ++AL +L+E +  V +AIEF+E  +D +LW  LI++S+KN  F+SGLL+H G Y VD  RL+  IP GM + GLRD++VKIISDY+ Q
Sbjct:  842 AFETIEQYDLFDSIR------DKVHLLMDYDPKRAVQMLVSHTERVPIAEVVDQLRGYPLMLHNYLHALFEKDPHI--GQTY---HEMQVALYAE------------YNYEFLMTFLKQSNYWALERAYQVCADKK--YYPEMVYILGRMGKVKQALQLLIENIADVKKAIEFIEPQNDDELWEDLIDYSMKNPRFVSGLLEHIGAY-VDPVRLIKRIPIGMEVIGLRDRIVKIISDYNLQ 1056          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12271.1732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFS4_9PHAE3.880e-14981.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS06_ECTSI7.790e-14486.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBT2_9STRA2.890e-6549.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0XVF2_AURAN4.690e-4539.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5D6XHY4_9STRA1.280e-4339.17RING-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A067BPI1_SAPPC1.580e-4338.02Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485LHE2_9STRA2.240e-4338.02Aste57867_21416 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Y531_9STRA2.610e-4236.78Vacuolar protein sorting-associated protein 41 n=1... [more]
A0A1V9YI15_9STRA2.320e-4136.99Vacuolar protein sorting-associated protein 41 n=1... [more]
A0A2P6NGE3_9EUKA2.530e-4141.08RING zinc finger-containing protein n=1 Tax=Planop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12271contigH-elongata_contig12271:4048..8128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score440.7
Seed ortholog evalue5.1e-121
Seed eggNOG ortholog2880.D7FS06
Preferred nameVPS41
KEGG koko:K20184
KEGG Pathwayko04138,map04138
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005798,GO:0005829,GO:0005856,GO:0006403,GO:0006508,GO:0006605,GO:0006623,GO:0006624,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008017,GO:0008055,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010259,GO:0010467,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0016482,GO:0016485,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023057,GO:0030135,GO:0030136,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033060,GO:0033227,GO:0033263,GO:0033365,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042440,GO:0042441,GO:0042594,GO:0042802,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043621,GO:0043933,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044804,GO:0045055,GO:0045184,GO:0045324,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0048066,GO:0048069,GO:0048193,GO:0048278,GO:0048284,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051604,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060548,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0098852,GO:0099022,GO:0099023,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902500,GO:1902774
EggNOG free text desc.regulation of SNARE complex assembly
EggNOG OGsKOG2066@1,KOG2066@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-12_006960.1
Exons4
Model size810
Cds size810
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12271.1732.1prot_H-elongata_contig12271.1732.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12271 4048..8128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929722.6798103-CDS-H-elongata_contig12271:4047..42811622929722.6798103-CDS-H-elongata_contig12271:4047..4281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12271 4048..4281 -
1691679132.9804459-CDS-H-elongata_contig12271:4047..42811691679132.9804459-CDS-H-elongata_contig12271:4047..4281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12271 4048..4281 -
1622929722.801895-CDS-H-elongata_contig12271:5748..59641622929722.801895-CDS-H-elongata_contig12271:5748..5964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12271 5749..5964 -
1691679132.9941814-CDS-H-elongata_contig12271:5748..59641691679132.9941814-CDS-H-elongata_contig12271:5748..5964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12271 5749..5964 -
1622929722.8159485-CDS-H-elongata_contig12271:6482..66861622929722.8159485-CDS-H-elongata_contig12271:6482..6686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12271 6483..6686 -
1691679133.0063195-CDS-H-elongata_contig12271:6482..66861691679133.0063195-CDS-H-elongata_contig12271:6482..6686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12271 6483..6686 -
1622929722.8348784-CDS-H-elongata_contig12271:7972..81281622929722.8348784-CDS-H-elongata_contig12271:7972..8128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12271 7973..8128 -
1691679133.023269-CDS-H-elongata_contig12271:7972..81281691679133.023269-CDS-H-elongata_contig12271:7972..8128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12271 7973..8128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12271.1732.1

>prot_H-elongata_contig12271.1732.1 ID=prot_H-elongata_contig12271.1732.1|Name=mRNA_H-elongata_contig12271.1732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
GDERGARSTGVTGGDDHKEQAGSAKGGQYAHVFRMIEQHSLFDTVQARDN
HTDRVLQMIHLDRELAGELLLRHPEKFAVSSVAVQLEGKRDLQHWYLGML
FDRSPEMYGSQEYAPFHALQVSLLAEFAPPFERGRPPPYNSAFLRFLRGS
GFAPLEAALRECGKRRPPLYDEMAYILGRMGNTRRALTILLEEVGSVPRA
IEFVESHDKDLWYRLIEHSLKNEAFLSGLLDHAGVYDVDLPRLVAEIPKG
MYIPGLRDKLVKIISDYHFQ
back to top

mRNA from alignment at H-elongata_contig12271:4048..8128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12271.1732.1 ID=mRNA_H-elongata_contig12271.1732.1|Name=mRNA_H-elongata_contig12271.1732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4081bp|location=Sequence derived from alignment at H-elongata_contig12271:4048..8128- (Himanthalia elongata Himel1 dioecious)
GGGGATGAGCGCGGTGCACGATCGACAGGGGTCACGGGGGGGGATGACCA TAAGGAGCAGGCGGGATCTGCAAAAGGGGGGCAGTACGCGCACGTGTTCC GCATGATCGAGCAGCACTCACTGTTCGACACAGTACAGGCAAGGGATAAC CACACAGTACAGTAAAGGGACAGAGGGGCAGGGTGGAAAGGGGTTGGTGT TTTCGAGTTTAGCATTCCTTGGCTGTTATATCATTTGACCATGCGTACCT CGGATAGGGGACGGAACTCTGTTCCAAATATGATGGGTCGCTGAGCGGGG AGTGGGGTGAATGACGAACGAGACTGTTTTCGTCGGAGAAAATAAATAAA AAACGGGGAGGAGAGTGGGGTGGGTTGACTCGAGAGGTTTGTTTTTTTTG TTAGGGGGGATGTGGAGGGGGAGAAAAAGGATATGTCCGCGCGCAATTCC GCCGTGATCCTTGATCCGTGATGTGGAACATACATCGTATATATATATAT ATATACTTCGGATGGGTTTTTACGATCCGCCGAGGGTTTCCGCTGGAGAG GCGGTGGGTTAGGGAAAAGAAGCCCCCAAACGACAAAACGATGAATCAAC GGTACGGAAAGAGCTGGTTTGTTGGTTGGTTGGTTCGAGTCGAGTCTGTT TTTATGTCTCGCTTCCCTATTAAAGAGCCTGCCTCAACGATTAAAGACGA TTACAGCGTTGTGATGCCCACTACCCCCCGCAAGGCAGGTTTTAGCGTGT TGGGACTGTTTTATCAATTTTAGCGTAGTGGTTGTTAACTGGACTGTAGC TATTATGGCTGCTTCTACCAACTTCAACGGTAACGGTAGCGGTAGCGAAT CCAACACAGGATGTCATGTGTCGTCTCGTCTTGCATCGCTTCTAACACAT CATATCTCACATGATTCTACGGGGGCCAGGGTTTGGGTTTAGCGCGAGGT GCTGCACTATCGTACGATCGCCGCGGAGGAAATTTGGTGCCATGAAATTG CACATGTTTCTGTTTGTGGCCATCACATATCATATATAATATACTATATA ATATACTATACTATATCGCACTGTTGTAGAATATGGATCAACCGGAAATC TATGGTGGTTACCAATCCTGCTATGGTGGAAATGTTTTTTTTTCTGTCCC CGTTCACGCCTGAGAATTTTGTCTCACGAGACGGGTTCCGCCGTCCCGTC CCGCGCCAGGCTGCTCATTCTCCCCTCGTCGTTTCGTGTGTTTTATTGGA GTTTAGTGTTGTGAAGTGTAGTGAAATGTAGTGAAATGTAGTTTAATTTA GTGTATTGCAGTCGAATGTTTTGTAGTCTCCCTCGAGCGCAGGAAGCGAC ACCCCTTTTTTTTGTTTTGTTTTTCAGGAAGCAGAAGACATGATACCTCT GATAGTAGAATTTCCACCTCCCTGTCTCCGTCCATTCCCTAGGACCGAGT CTTGCAGATGATTCACCTCGACAGAGAGCTGGCGGGCGAGCTGCTGCTGC GGCACCCCGAGAAATTCGCCGTGTCTTCCGTGGCCGTGCAGCTGGAAGGG AAGAGAGATCTGCAGCACTGGTATCTTGGCATGCTCTTCGACAGATCTCC GGAGATGTATGGCTCCCAGGAGTACGCGCCTTTCCACGCGCTGCAGGTAT TATACACTACATCATGTAATGCCTCTCACGGTGCGAAGAAGGCGATGGAT ATTCGGAGAGTTGGAATGAGTTCATATGTTTTTTTAAGAATAATGTCATA TCGTGTCGTCTTTCCCTCTCTTTTAGTTTTTAGTTTTGGTTTTCACCCAC TTCAACTGATAAAATATTTAGATCCCTAAAGTCAAATTAGTTCATAGCTG TCTTGTGGTTTTCATTCGCACGCACACCCACTGTTGACACCTTGACGTGA ACACAAACGCGAGAGTGATTACTTTTCGTACGCTCGGGGGAGGCCACGGT AGCATGCTTGATAATTTCATACTACTATGAATAATATAATAGTAATCCTC TGATCGCTTGAGCAGGCACGGAGCGCGGGTCATCAGGTCCTGCGTGTGTT TGTGTGCTTGTGACGCGATGCTGCCACAGTACTAAAACTAATATTATAAT CATGCAATAAGAAAACAATAAACAAGCTAAAATCAAAAGCTCCAACTCTT TCGTGCTCGGGAAGGTGTCGCTGCTCGCCGAGTTCGCGCCGCCGTTCGAA CGGGGCCGCCCTCCGCCCTACAACAGCGCCTTCCTTCGTTTCCTGAGAGG CAGCGGGTTCGCTCCTCTAGAGGCCGCCCTGAGAGAGTGCGGGAAGCGCC GACCGCCCTTGTACGACGAGATGGCGTACATCCTCGGGAGGATGGGGAAC ACGCGGCGCGCGCTGACGATCTTGTTAGAGGTTCGTTTTTTTTTTCAAAA ATACCTATGACCTATTCCCCCTTTTCTCCTTTTCTCCTCCTTTTCTCCCC CTTTTCTCCCCATTTTCTATTTTTCAACCTGGTAATGTTAAATGCAAACA AAAGGACAAGTAAGAGGGAAAACATATTTATATATATATATATATATATA TCTGTATATGAAGAAATATGCACATCTGTTTATAGCATATCGGAGGATCT AAGGATATAGATATAATGTCGTAATATATTCGAATATAGCATATCGGAGA GTAATGGAATGCCTGGTCACGTATATAATGTAAGATGGTCAGGTAATACG AAATGTATGGTCATCATATGAAGCAGAGAGAGTTTATAATGTATAGTAAA GATCAACCGGGTATGGATACCTCCTGCTTGAGGTTAGCTGAATCACCGGT ACCGACCGAAGGTGAGGAGCCGATCGCCTCAGCAGCAGCCGCACGACCAG TGGGAGTTGTGATGGGGTATGTAGGGGCTGGCACAGACGCGGTTGCGGCG GCCACGATTTCGGAACTGGCGGCCGCTGTCGCGATGAGGCAGGTTGTAGG AATTGAGGGGTGGTGGGGGGGGGGATACGCCGGTCACCAACGCTGTAGCC TAGAGAGAGGGGGTGGGAGGGATCGAGGCGTGAGCACCCGCTGCGACAGT GGCGAATACGGCGGCGCTGGTAGCGACGGTAGCGATGATGACCGTCCTGC AAGCGGCGAGAATCCGCCAGATCGGAAACGCCAGGTTTATATATATATAT ATATTCTATGTTTGTCTCCACTTCTTTTGCCCCGAGGGTGTTTTGGGGGG AGAAGCGACTTAGCTCTCTCCTCCCCGAGAGTTTCGGGAGCGATTTTTAC GACCGAACCTGCTCCAAGTTTCATCCAAGTGCCATCCATTAATAGGTGTC TTCCCAAATATAGGATATGATAGGATAGGATAGGATGCACTACGTATTTA TGAAGGGAAAGACAGTGACGTCTCTGTCAATTCGAAAGACGGTTGATACC TTGGCCAGGATTCGTCAGCAATTGACACCGGGGACACTGTCGACACCGCG CCGGTTGTGTCTGGTTGGGAGGGGAACCCTGCTCTGAGCGCGATCCCCCC TGTCCTCCCTTATTCCTTCCCCGGCATTGTTAACCTCCCGCGACGTGTGT CTCTCCCCCCCCCCCCCCTCCCCTTCCGGAAACAAGCTTTTGCTTCTTCA ACAACCCCCCGTAACCGTTCTGTCCAATTATAGCTCTAGCCCATGGCATG TCGTGGCATGTCCGGTTTGGCGTAGAAAACGAAAGGATTATGGCTAAAAG CTGCTGTAATAGTATCCTTGCGAAGCGCACCCGGGGCGACGAAAAGCCGG CATGCCGCTGACCTGGCGTTGTTGAAATGTGTGGTCTACGTCCCTTAGGA TACGACGACATGCCTTAATCAACAAGTAACCCTACCCGTCCTCGCAGGAG GTCGGGAGCGTCCCACGCGCGATCGAGTTCGTGGAGTCCCACGACAAGGA CCTGTGGTACCGTCTGATCGAGCACAGTCTCAAAAATGAGGCGTTCCTCT CGGGGCTGCTCGACCACGCCGGTGTCTACGACGTCGACCTCCCCCGCCTC GTGGCCGAGATTCCCAAGGGGATGTACATACCAGGCTTGAGGGACAAGCT CGTGAAGATCATCTCGGACTACCACTTTCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12271:4048..8128-

>mRNA_H-elongata_contig12271.1732.1 ID=mRNA_H-elongata_contig12271.1732.1|Name=mRNA_H-elongata_contig12271.1732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig12271:4048..8128- (Himanthalia elongata Himel1 dioecious)
GGGGATGAGCGCGGTGCACGATCGACAGGGGTCACGGGGGGGGATGACCA
TAAGGAGCAGGCGGGATCTGCAAAAGGGGGGCAGTACGCGCACGTGTTCC
GCATGATCGAGCAGCACTCACTGTTCGACACAGTACAGGCAAGGGATAAC
CACACAGGGGATGAGCGCGGTGCACGATCGACAGGGGTCACGGGGGGGGA
TGACCATAAGGAGCAGGCGGGATCTGCAAAAGGGGGGCAGTACGCGCACG
TGTTCCGCATGATCGAGCAGCACTCACTGTTCGACACAGTACAGGCAAGG
GATAACCACACAGACCGAGTCTTGCAGATGATTCACCTCGACAGAGAGCT
GGCGGGCGAGCTGCTGCTGCGGCACCCCGAGAAATTCGCCGTGTCTTCCG
TGGCCGTGCAGCTGGAAGGGAAGAGAGATCTGCAGCACTGGTATCTTGGC
ATGCTCTTCGACAGATCTCCGGAGATGTATGGCTCCCAGGAGTACGCGCC
TTTCCACGCGCTGCAGGACCGAGTCTTGCAGATGATTCACCTCGACAGAG
AGCTGGCGGGCGAGCTGCTGCTGCGGCACCCCGAGAAATTCGCCGTGTCT
TCCGTGGCCGTGCAGCTGGAAGGGAAGAGAGATCTGCAGCACTGGTATCT
TGGCATGCTCTTCGACAGATCTCCGGAGATGTATGGCTCCCAGGAGTACG
CGCCTTTCCACGCGCTGCAGGTGTCGCTGCTCGCCGAGTTCGCGCCGCCG
TTCGAACGGGGCCGCCCTCCGCCCTACAACAGCGCCTTCCTTCGTTTCCT
GAGAGGCAGCGGGTTCGCTCCTCTAGAGGCCGCCCTGAGAGAGTGCGGGA
AGCGCCGACCGCCCTTGTACGACGAGATGGCGTACATCCTCGGGAGGATG
GGGAACACGCGGCGCGCGCTGACGATCTTGTTAGAGGTGTCGCTGCTCGC
CGAGTTCGCGCCGCCGTTCGAACGGGGCCGCCCTCCGCCCTACAACAGCG
CCTTCCTTCGTTTCCTGAGAGGCAGCGGGTTCGCTCCTCTAGAGGCCGCC
CTGAGAGAGTGCGGGAAGCGCCGACCGCCCTTGTACGACGAGATGGCGTA
CATCCTCGGGAGGATGGGGAACACGCGGCGCGCGCTGACGATCTTGTTAG
AGGAGGTCGGGAGCGTCCCACGCGCGATCGAGTTCGTGGAGTCCCACGAC
AAGGACCTGTGGTACCGTCTGATCGAGCACAGTCTCAAAAATGAGGCGTT
CCTCTCGGGGCTGCTCGACCACGCCGGTGTCTACGACGTCGACCTCCCCC
GCCTCGTGGCCGAGATTCCCAAGGGGATGTACATACCAGGCTTGAGGGAC
AAGCTCGTGAAGATCATCTCGGACTACCACTTTCAGGAGGTCGGGAGCGT
CCCACGCGCGATCGAGTTCGTGGAGTCCCACGACAAGGACCTGTGGTACC
GTCTGATCGAGCACAGTCTCAAAAATGAGGCGTTCCTCTCGGGGCTGCTC
GACCACGCCGGTGTCTACGACGTCGACCTCCCCCGCCTCGTGGCCGAGAT
TCCCAAGGGGATGTACATACCAGGCTTGAGGGACAAGCTCGTGAAGATCA
TCTCGGACTACCACTTTCAG
back to top