mRNA_H-elongata_contig122650.1727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122650.1727.1
Unique NamemRNA_H-elongata_contig122650.1727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 7.130e-16
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 3 
Query:  327 VKVLLIIEETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTGV 536
            ++VL+  EE V  RKVKR Y L+T LASCFCSA Q  +YE  +VNK YP +VPAL +GEV ETV+++TGV
Sbjct:  350 LQVLVSGEEGVTCRKVKRTYRLRTRLASCFCSACQRFEYEQCYVNKKYPRLVPALQEGEVKETVIMDTGV 419
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BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5JQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.870e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTGV 536
            EE V  +KVKR YSL+T LASCFCSA + S+YE ++V+K YP +VPA+ DG V ETV+++TGV
Sbjct:  595 EEDVTCKKVKRTYSLRTRLASCFCSACRRSEYEQYYVSKTYPRLVPAMEDGVVKETVIMDTGV 657
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BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.870e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTGV 536
            EE V  +KVKR YSL+T LASCFCSA + S+YE ++V+K YP +VPA+ DG V ETV+++TGV
Sbjct:  652 EEDVTCKKVKRTYSLRTRLASCFCSACRRSEYEQYYVSKTYPRLVPAMEDGVVKETVIMDTGV 714
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BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5JDR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.800e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTGV 536
            EE V  RKVKR Y L++ LASCFCSA Q  +YE   V+K YP +VPAL +GEV ETV+++TGV
Sbjct:  114 EEDVTCRKVKRTYRLRSRLASCFCSACQRCEYEQCDVSKTYPRLVPALQEGEVKETVIMDTGV 176
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BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5JBS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.310e-14
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTG 533
            EE V  RKVKR Y L+T LASCFCSA Q  +YE  +V+K YP +VPAL  GEV ETV+++TG
Sbjct:  294 EEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQQGEVKETVIMDTG 355
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BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.560e-14
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTGV 536
            EE V  RKVKR YSL+T LASCFCSA Q S+YE  +V+K YP +VPA+  G V ETV ++TGV
Sbjct:  824 EEDVTCRKVKRTYSLRTRLASCFCSACQRSEYEQCYVSKTYPRLVPAMQKGVVKETVTMDTGV 886
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BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.180e-14
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTGV 536
            EE V  RKVKR Y L+T LASCFCSA Q  ++E  +V+K YP ++PAL +GEV ETV+++TGV
Sbjct:  618 EEDVTCRKVKRTYRLRTRLASCFCSACQRCEHEQCYVSKTYPRLLPALREGEVKETVIMDTGV 680
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BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5KTJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.070e-13
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTGV 536
            EE V  RKVKR YSL+T LASCFCSA   S+YE  +V+K YP +VPA+ D  V E V+++TGV
Sbjct:  426 EEDVTCRKVKRTYSLRTRLASCFCSACLRSEYEQCYVSKTYPRLVPAMKDDVVKEPVIMDTGV 488
[Close]
BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5JQK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.580e-12
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVPALTDGEVTETVVINTGV 536
            EE +  RKVKR  SL+T LASCFCS  + S+YE  +V+K +P +VP + DG V ETV++ TGV
Sbjct:  257 EEDMTCRKVKRTCSLRTRLASCFCSVCRRSEYEQCYVSKTFPRLVPVMEDGVVKETVIMGTGV 319
[Close]
BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Match: A0A6H5KDZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.730e-5
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 3 
Query:  348 EETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGIVP 485
            EE V  RKVKR YSL+T LASCFCSA + S YE  +V+K  P  +P
Sbjct:  655 EEDVTCRKVKRTYSLRTRLASCFCSACRRSDYEQCYVSKRTPVSLP 700
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122650.1727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JLE6_9PHAE7.130e-1660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQK2_9PHAE2.870e-1560.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L293_9PHAE2.870e-1560.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDR7_9PHAE6.800e-1560.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS1_9PHAE2.310e-1461.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE2.560e-1461.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2L6_9PHAE6.180e-1458.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTJ4_9PHAE5.070e-1358.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQK7_9PHAE6.580e-1253.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ7_9PHAE4.730e-558.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122650contigH-elongata_contig122650:2..555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size554
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122650.1727.1prot_H-elongata_contig122650.1727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122650 181..540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.7654128-UTR-H-elongata_contig122650:1..1801622929721.7654128-UTR-H-elongata_contig122650:1..180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122650 2..180 +
1691679132.5333283-UTR-H-elongata_contig122650:1..1801691679132.5333283-UTR-H-elongata_contig122650:1..180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122650 2..180 +
1622929721.799783-UTR-H-elongata_contig122650:540..5551622929721.799783-UTR-H-elongata_contig122650:540..555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122650 541..555 +
1691679132.5637004-UTR-H-elongata_contig122650:540..5551691679132.5637004-UTR-H-elongata_contig122650:540..555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122650 541..555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.7810018-CDS-H-elongata_contig122650:180..5401622929721.7810018-CDS-H-elongata_contig122650:180..540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122650 181..540 +
1691679132.5413537-CDS-H-elongata_contig122650:180..5401691679132.5413537-CDS-H-elongata_contig122650:180..540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122650 181..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122650.1727.1

>prot_H-elongata_contig122650.1727.1 ID=prot_H-elongata_contig122650.1727.1|Name=mRNA_H-elongata_contig122650.1727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MDWTRRLAFFFKIYMNSFKPFVYPHLLYIMKCGSSGGQLYRRFECVHYYV
KVLLIIEETVVVRKVKRKYSLKTCLASCFCSAWQHSQYEDWHVNKVYPGI
VPALTDGEVTETVVINTGV*
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mRNA from alignment at H-elongata_contig122650:2..555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122650.1727.1 ID=mRNA_H-elongata_contig122650.1727.1|Name=mRNA_H-elongata_contig122650.1727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=554bp|location=Sequence derived from alignment at H-elongata_contig122650:2..555+ (Himanthalia elongata Himel1 dioecious)
AAATCGTCACACTTAAGCATGCCTTTTTTTACCTTATACCGTAGTTAAGA
GAAGGAAGTAAATACAAACGAACATATATCCATAGAGAGGCCGTTAGAGG
GTCATAGGTCACAATCAACCAGTTTGTCGCCTGGGATTTAAAGCGTGAGA
TGTACATTTGACCTCAGGAATTCAGCACTATGGATTGGACCAGGCGCTTG
GCATTTTTCTTTAAAATATATATGAACTCATTCAAACCCTTCGTATATCC
ACACCTTCTTTACATCATGAAATGTGGAAGTTCAGGGGGCCAACTATATC
GTAGGTTCGAGTGTGTACATTACTATGTAAAAGTATTACTAATAATCGAG
GAGACGGTTGTCGTGAGAAAGGTAAAACGGAAGTACAGTCTCAAAACCTG
TTTAGCGTCGTGCTTTTGCTCGGCTTGGCAGCATTCTCAGTACGAGGATT
GGCACGTCAACAAGGTGTACCCGGGGATCGTTCCCGCACTGACGGACGGT
GAAGTAACGGAAACTGTCGTCATAAACACTGGGGTATAGGGCCCACAGAT
GTAG
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Coding sequence (CDS) from alignment at H-elongata_contig122650:2..555+

>mRNA_H-elongata_contig122650.1727.1 ID=mRNA_H-elongata_contig122650.1727.1|Name=mRNA_H-elongata_contig122650.1727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig122650:2..555+ (Himanthalia elongata Himel1 dioecious)
ATGGATTGGACCAGGCGCTTGGCATTTTTCTTTAAAATATATATGAACTC
ATTCAAACCCTTCGTATATCCACACCTTCTTTACATCATGAAATGTGGAA
GTTCAGGGGGCCAACTATATCGTAGGTTCGAGTGTGTACATTACTATGTA
AAAGTATTACTAATAATCGAGGAGACGGTTGTCGTGAGAAAGGTAAAACG
GAAGTACAGTCTCAAAACCTGTTTAGCGTCGTGCTTTTGCTCGGCTTGGC
AGCATTCTCAGTACGAGGATTGGCACGTCAACAAGGTGTACCCGGGGATC
GTTCCCGCACTGACGGACGGTGAAGTAACGGAAACTGTCGTCATAAACAC
TGGGGTATAGATGGATTGGACCAGGCGCTTGGCATTTTTCTTTAAAATAT
ATATGAACTCATTCAAACCCTTCGTATATCCACACCTTCTTTACATCATG
AAATGTGGAAGTTCAGGGGGCCAACTATATCGTAGGTTCGAGTGTGTACA
TTACTATGTAAAAGTATTACTAATAATCGAGGAGACGGTTGTCGTGAGAA
AGGTAAAACGGAAGTACAGTCTCAAAACCTGTTTAGCGTCGTGCTTTTGC
TCGGCTTGGCAGCATTCTCAGTACGAGGATTGGCACGTCAACAAGGTGTA
CCCGGGGATCGTTCCCGCACTGACGGACGGTGAAGTAACGGAAACTGTCG
TCATAAACACTGGGGTATAG
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