mRNA_H-elongata_contig122506.1720.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122506.1720.1
Unique NamemRNA_H-elongata_contig122506.1720.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: D7FM27_ECTSI (FAP9, Ras superfamily GTPase-like flagellar protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM27_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 4.810e-57
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    1 MTSDGRPLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            M+S+ R LKIVVCGPVKGGKTSIA+FI+GQT+Q+G   + YE T+GVRILECEKQPGI+G KVPVEIWDVSGDQ+FE+CWPAI + VDGV+LVY+PEIPTH  EVGIW
Sbjct:    1 MSSNNRALKIVVCGPVKGGKTSIANFIAGQTEQIGTGNRIYEPTVGVRILECEKQPGITGNKVPVEIWDVSGDQAFESCWPAIMKGVDGVMLVYNPEIPTHDIEVGIW 108
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: A0A836CPS0_9STRA (FAP9, ras superfamily GTPase-like flagellar protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPS0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.950e-45
Identity = 64/100 (64.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:   25 KIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            KIVVCGP +GGKTS+A+F++G ++ +G+P   YE T GVRILECE+QPGI+GGKV VE+WDVSG+ S+E CWPAI +D DGV+LV++PEIPTH  E+  W
Sbjct:    8 KIVVCGPSRGGKTSLANFLAGLSESVGHPSLKYEPTAGVRILECERQPGIAGGKVMVELWDVSGNMSYETCWPAIIKDADGVVLVFNPEIPTHEPEIATW 107
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: A0A1V9Y9U1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9U1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.250e-33
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:   19 PLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            PLKI+V GP +GGKT+IA+F++  TD+LGN ++ Y+ TIGVRILECEK  G   G V +E WD SGDQ +EACWPAI +D +  ILVY+PE   H +E  +W
Sbjct:    3 PLKILVVGPKEGGKTAIANFLAESTDRLGNQER-YQPTIGVRILECEKNLG--RGAVSIEFWDCSGDQIYEACWPAILKDANATILVYNPESHVHESEATLW 101
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: A0A024TZV0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZV0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.880e-33
Identity = 57/102 (55.88%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:   19 PLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            PLKI+V GP +GGK++IA+F+S  TD+LGN +K Y+ T+GVRILECEK  G +  +  VEIWD SGDQ +EACWPAI +D +  I+VY+P+   H +EV +W
Sbjct:    4 PLKILVVGPKEGGKSAIANFLSDSTDRLGNQEK-YQPTVGVRILECEKTNGRA--QASVEIWDCSGDQVYEACWPAILKDANATIIVYNPDSHVHESEVTLW 102
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: K3W9N8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9N8_GLOUD)

HSP 1 Score: 122 bits (306), Expect = 3.860e-33
Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:   19 PLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            PLKI++ GP + GKT+IA+F+S QTD+LG+ ++ Y  TIGVRILE EK      GK  +EIWDVSGDQ +EACWPA+ +D +GVILVY+PE   H +E  +W
Sbjct:    3 PLKILIVGPKEAGKTTIANFLSEQTDRLGSQER-YHPTIGVRILELEK------GKANIEIWDVSGDQVYEACWPAVMKDANGVILVYNPESHIHESEAMLW 97
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: D0NBS8_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NBS8_PHYIT)

HSP 1 Score: 120 bits (300), Expect = 4.780e-33
Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:   19 PLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            PLKI++ GP + GK++IA+F++  TD+LG+ ++ Y+ T+GVRILE +K      GK  VE+WDVSGDQ++EACWPA+ +D DGVILVY+PE   H +E  +W
Sbjct:    3 PLKILIVGPKEAGKSTIANFLAEHTDRLGSQER-YQPTVGVRILELDK------GKANVELWDVSGDQNYEACWPAVMKDTDGVILVYNPESHVHESEAVLW 97
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: A0A0W8DY96_PHYNI (Intraflagellar transport protein 22 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DY96_PHYNI)

HSP 1 Score: 119 bits (299), Expect = 5.850e-33
Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:   19 PLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            PLKI++ GP + GK++IA+F++  TD+LG+ ++ Y+ T+GVRILE EK      GK  VE+WDVSGDQ++EACWPA+ ++ DGVILVY+PE   H +E  +W
Sbjct:    3 PLKILIVGPKEAGKSTIANFLAEHTDRLGSQER-YQPTVGVRILELEK------GKTNVELWDVSGDQNYEACWPAVMKETDGVILVYNPESHVHESEAMLW 97
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: A0A2D4C3U8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3U8_PYTIN)

HSP 1 Score: 121 bits (303), Expect = 9.830e-33
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:   19 PLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            PLK+++ GP + GKT+IA+F+  QTD+LG P+K Y+ TIGVRILE EK       K  VE+WDVSGDQ +EACWPA+ +D  GVILVY+PE   H +E  +W
Sbjct:    4 PLKLLIVGPKEAGKTTIANFLCEQTDRLGGPEK-YQPTIGVRILELEKN------KTNVELWDVSGDQVYEACWPAVTKDAHGVILVYNPESHVHESEAMLW 98
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: A0A067C1W9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1W9_SAPPC)

HSP 1 Score: 120 bits (302), Expect = 1.430e-32
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:   22 LKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            LK++V GP +GGKT+IA+F++  TD+LGN ++ Y+ TIGVRILECEK  G   G+V VE WD SGDQ +EACWPAI +D    +LVY+PE   H +EV +W
Sbjct:    4 LKVLVVGPKEGGKTAIANFLAEGTDRLGNQER-YQPTIGVRILECEKNLG--RGQVSVEFWDCSGDQIYEACWPAILKDAHATLLVYNPESHVHESEVTLW 101
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BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Match: A0A5D6YE59_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YE59_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.600e-32
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:   19 PLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRILECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPTHATEVGIW 324
            PLKIVV GP + GKT+IA+F+S QTD+LG  ++ Y+ T+GVRILE E+      GK  +EIWDVSGDQ +EACW A+ +DV+GV+LVY+PE   H +E  +W
Sbjct:    3 PLKIVVVGPKEAGKTTIANFLSEQTDRLGGQER-YQPTVGVRILELER------GKTNIEIWDVSGDQVYEACWAAVTKDVNGVVLVYNPESHIHESEAMLW 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122506.1720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM27_ECTSI4.810e-5775.93FAP9, Ras superfamily GTPase-like flagellar protei... [more]
A0A836CPS0_9STRA2.950e-4564.00FAP9, ras superfamily GTPase-like flagellar protei... [more]
A0A1V9Y9U1_9STRA1.250e-3356.86Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TZV0_9STRA2.880e-3355.88Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
K3W9N8_GLOUD3.860e-3356.86Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NBS8_PHYIT4.780e-3352.94Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A0W8DY96_PHYNI5.850e-3352.94Intraflagellar transport protein 22 n=1 Tax=Phytop... [more]
A0A2D4C3U8_PYTIN9.830e-3355.88Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A067C1W9_SAPPC1.430e-3256.44Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A5D6YE59_9STRA1.600e-3255.88Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122506contigH-elongata_contig122506:85..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1e-43
Seed eggNOG ortholog2880.D7FM27
Preferred nameIFT22
KEGG koko:K07935,ko:K07976
GOsGO:0002119,GO:0002164,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008340,GO:0009791,GO:0009987,GO:0010259,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0035735,GO:0040024,GO:0042073,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0048009,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097014,GO:0097542,GO:0097546,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.GTP binding
EggNOG OGs29S7E@1,2RXD4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAP9, Ras superfamily GTPase-like flagellar protein
Ec32 orthologEc-01_010420.1
Exons3
Model size324
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122506.1720.1prot_H-elongata_contig122506.1720.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122506 85..1107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.0602486-CDS-H-elongata_contig122506:84..2271622929721.0602486-CDS-H-elongata_contig122506:84..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122506 85..227 +
1691679132.2550886-CDS-H-elongata_contig122506:84..2271691679132.2550886-CDS-H-elongata_contig122506:84..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122506 85..227 +
1622929721.080657-CDS-H-elongata_contig122506:683..7641622929721.080657-CDS-H-elongata_contig122506:683..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122506 684..764 +
1691679132.272493-CDS-H-elongata_contig122506:683..7641691679132.272493-CDS-H-elongata_contig122506:683..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122506 684..764 +
1622929721.0972097-CDS-H-elongata_contig122506:1007..11071622929721.0972097-CDS-H-elongata_contig122506:1007..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122506 1008..1107 +
1691679132.280916-CDS-H-elongata_contig122506:1007..11071691679132.280916-CDS-H-elongata_contig122506:1007..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122506 1008..1107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122506.1720.1

>prot_H-elongata_contig122506.1720.1 ID=prot_H-elongata_contig122506.1720.1|Name=mRNA_H-elongata_contig122506.1720.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MTSDGRPLKIVVCGPVKGGKTSIADFISGQTDQLGNPKKTYETTIGVRIL
ECEKQPGISGGKVPVEIWDVSGDQSFEACWPAIKQDVDGVILVYSPEIPT
HATEVGIW
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mRNA from alignment at H-elongata_contig122506:85..1107+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122506.1720.1 ID=mRNA_H-elongata_contig122506.1720.1|Name=mRNA_H-elongata_contig122506.1720.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-elongata_contig122506:85..1107+ (Himanthalia elongata Himel1 dioecious)
ATGACAAGCGACGGCAGACCCTTAAAGATCGTCGTTTGCGGTCCTGTCAA
AGGCGGGAAAACATCTATCGCTGACTTCATATCTGGCCAGACGGACCAAC
TAGGCAACCCCAAGAAGACGTACGAGACAACAATTGGGGTTAGGTAGAAG
AACTATTTTAAACGTCACCCATTTGCTGAATTTGAACTTAACGCGTTATC
TTGCGGATGTTAGCCCTTTGATCAGGTGATGAGGGGTATTATTAGGGGTC
GACGTTTCCATCGGGGTAGTGTGCGCGAGGAGGATATAGCAGCAGCACCG
TTTCCTGCCGGGGTACTTGACTCTAATATCGTCTCATATCAACAAACTAT
GGGAATCGTCCTAAGATATCACCACCTGATCGCACCCGACTTGTATCTCG
CCAGCAATACTCTTACCTTCTCCGTAGTTGCCCACCTTAATACGGCTTGC
TAGGATTCTCGAGTGCGAAAATAGTCGTCTGAGAATTAATGTCTCAGCTG
AGATCTGGAACGTATCTCAGACCATCAGCTGATCGGACCCGACACCCCAT
CTCGCCAAATGTTGTCGCCTCTAACTTTCTCCATCTCGAAACTACTTAGG
ATTTTGGAGTGCGAAAAGCAACCTGGGATTTCTGGAGGCAAGGTCCCAGT
TGAGATCTGGGATGTATCAGGAGACCAATCGTGAGCGAGTACAGACAAAG
TAGAGCTAAGCGGAACACCTGTGTATGGGGGTAGACATGACTGACGTTGC
TTGAGCATTAATAGACGATTTTTCCGGGGCTTCAAGACGAATCTGGGAAG
GATGAAACCAACGACAGTGCGGTACCTCTAACATGTACGTAGGTCGTTGC
TATGGGCATATACCTCCTGCGGATTGCAAATCACGTGAAATATATCTGCT
ATTTTTTTATCCAATGACATAAGGTTTGAGGCGTGTTGGCCAGCCATCAA
GCAAGACGTGGACGGCGTGATCCTGGTCTACAGTCCAGAAATTCCAACCC
ATGCCACCGAGGTCGGAATCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig122506:85..1107+

>mRNA_H-elongata_contig122506.1720.1 ID=mRNA_H-elongata_contig122506.1720.1|Name=mRNA_H-elongata_contig122506.1720.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig122506:85..1107+ (Himanthalia elongata Himel1 dioecious)
ATGACAAGCGACGGCAGACCCTTAAAGATCGTCGTTTGCGGTCCTGTCAA
AGGCGGGAAAACATCTATCGCTGACTTCATATCTGGCCAGACGGACCAAC
TAGGCAACCCCAAGAAGACGTACGAGACAACAATTGGGGTTAGATGACAA
GCGACGGCAGACCCTTAAAGATCGTCGTTTGCGGTCCTGTCAAAGGCGGG
AAAACATCTATCGCTGACTTCATATCTGGCCAGACGGACCAACTAGGCAA
CCCCAAGAAGACGTACGAGACAACAATTGGGGTTAGGATTTTGGAGTGCG
AAAAGCAACCTGGGATTTCTGGAGGCAAGGTCCCAGTTGAGATCTGGGAT
GTATCAGGAGACCAATCGATTTTGGAGTGCGAAAAGCAACCTGGGATTTC
TGGAGGCAAGGTCCCAGTTGAGATCTGGGATGTATCAGGAGACCAATCGT
TTGAGGCGTGTTGGCCAGCCATCAAGCAAGACGTGGACGGCGTGATCCTG
GTCTACAGTCCAGAAATTCCAACCCATGCCACCGAGGTCGGAATCTGGGT
TTGAGGCGTGTTGGCCAGCCATCAAGCAAGACGTGGACGGCGTGATCCTG
GTCTACAGTCCAGAAATTCCAACCCATGCCACCGAGGTCGGAATCTGG
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