mRNA_H-elongata_contig122505.1719.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: D7FJJ0_ECTSI (D-3-phosphoglycerate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ0_ECTSI) HSP 1 Score: 237 bits (605), Expect = 9.350e-73 Identity = 122/135 (90.37%), Postives = 130/135 (96.30%), Query Frame = 1
Query: 1 MALSKLGLASRRAFHAAGGPRAARILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
M+LSKLGLA RRAFHAA PRAARILCLDNIDPVCVDIFQERGHHADVK+KLS EQL+GI+GNYDGMVIRSATKATP+LL+KATNMKVIGRAGVGIDNIDVAEATR+G+LVMNTPGGNTVSTAQLAISLL SAAR
Sbjct: 62 MSLSKLGLAGRRAFHAAA-PRAARILCLDNIDPVCVDIFQERGHHADVKNKLSVEQLHGIIGNYDGMVIRSATKATPDLLAKATNMKVIGRAGVGIDNIDVAEATRKGVLVMNTPGGNTVSTAQLAISLLCSAAR 195
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A835Z0M8_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M8_9STRA) HSP 1 Score: 174 bits (441), Expect = 4.230e-49 Identity = 86/125 (68.80%), Postives = 105/125 (84.00%), Query Frame = 1
Query: 31 RRAFHAAGGPRAARILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
RRA HA+ A R+LCLDNIDPVCV+IF+ERGH ADVK+ L+ +L I+G+YDGMVIRSATK T E+L A+N+KV+GRAGVGIDNIDV E T+ G++VMNTPGGNTVSTAQLA++LL +AAR
Sbjct: 21 RRAIHASSAA-AGRVLCLDNIDPVCVEIFKERGHQADVKNGLTVPELCSIIGDYDGMVIRSATKVTGEVLKHASNLKVVGRAGVGIDNIDVPECTKAGVMVMNTPGGNTVSTAQLAVTLLCAAAR 144
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A7S4DB34_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB34_HETAK) HSP 1 Score: 167 bits (424), Expect = 7.440e-49 Identity = 82/125 (65.60%), Postives = 100/125 (80.00%), Query Frame = 1
Query: 31 RRAFHAAGGPRAARILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
RR F +A P+ ARILC DNIDPVCVDIF+E GH D KSK++ E+L I+ Y+G+V+RS TK T +LSKATN+KV+GRAGVG+DNID+ AT+ G+LVMNTPGGNTVSTAQLA SL+ S AR
Sbjct: 42 RRNFQSAS-PQLARILCCDNIDPVCVDIFEENGHEVDYKSKVTDEELCEIIPKYEGLVVRSGTKVTENVLSKATNLKVVGRAGVGVDNIDIPAATKHGVLVMNTPGGNTVSTAQLAFSLMCSMAR 165
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A7S2RFC5_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFC5_9STRA) HSP 1 Score: 163 bits (412), Expect = 6.740e-45 Identity = 79/115 (68.70%), Postives = 95/115 (82.61%), Query Frame = 1
Query: 61 RAARILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
R+A +LC D+IDPVCVDIF+ERGH D K L P L I+ YDG+V+RSATK T +++S A+N+KV+GRAGVG+DNIDV EAT+ G+LVMNTPGGNTVSTAQLAISLL SAAR
Sbjct: 31 RSAMVLCSDSIDPVCVDIFRERGHDVDYKVGLQPSDLKEIIHKYDGLVVRSATKVTADVISAASNLKVVGRAGVGVDNIDVPEATKHGVLVMNTPGGNTVSTAQLAISLLCSAAR 145
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A6U4F3N0_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F3N0_9STRA) HSP 1 Score: 162 bits (411), Expect = 8.340e-45 Identity = 84/135 (62.22%), Postives = 105/135 (77.78%), Query Frame = 1
Query: 13 KLGLASRRAFHAAG--GPRA--ARILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
KL + RA A G RA A+ILC D IDPVC++IF+++GH D + L ++L GI+G+YDG+V+RSATK TP+++ ATN+KVIGRAGVGIDNID ATRRGI+VMNTPGGNTVSTAQLA+SL+ SAAR
Sbjct: 6 KLARQAPRALRARGLHSTRATLAKILCSDPIDPVCIEIFEKQGHQVDSITGLGEDELCGIIGDYDGLVVRSATKVTPKVMDAATNLKVIGRAGVGIDNIDTPHATRRGIMVMNTPGGNTVSTAQLAVSLICSAAR 140
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A7R9U7T3_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7T3_9STRA) HSP 1 Score: 158 bits (400), Expect = 3.220e-43 Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 22 LASRRAFHAAGGPRAARILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
L SRR+FH++ A+ILC D IDPVCV+IF++ GH D + LS ++L I+ YDG+V+RSATK T +++ ATN+KVIGRAGVGIDNID ATRRGI+VMNTPGGNTVSTAQLA+SL+ S AR
Sbjct: 14 LVSRRSFHSSRAT-LAKILCSDQIDPVCVEIFEKNGHEVDSITGLSEDELCQIIHAYDGLVVRSATKVTAKVMDAATNLKVIGRAGVGIDNIDTPHATRRGIMVMNTPGGNTVSTAQLAVSLICSVAR 140
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A350PKP5_9BACT (Phosphoglycerate dehydrogenase (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A350PKP5_9BACT) HSP 1 Score: 147 bits (370), Expect = 4.900e-41 Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 70 RILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
++L LD +DPVC +IF+ERG AD KLSPE+L + NYDGMV+RSAT TPELL KATNMKVIGRAGVG+DNID+ AT +GILVMNTP GNT+STA+ ++ + AR
Sbjct: 4 KVLLLDGVDPVCANIFKERGIQADQPIKLSPEELNSQISNYDGMVVRSATTVTPELLEKATNMKVIGRAGVGVDNIDIKAATTKGILVMNTPDGNTISTAEHTCGMIIALAR 115
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A3F3I2Q4_9BACT (D-3-phosphoglycerate dehydrogenase n=5 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3F3I2Q4_9BACT) HSP 1 Score: 147 bits (372), Expect = 2.250e-39 Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 70 RILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
++L LD +DPVC +IF+ERG AD KLSPE+L + NYDGMV+RSAT TPELL KATNMKVIGRAGVG+DNID+ AT +GILVMNTP GNT+STA+ ++ + AR
Sbjct: 4 KVLLLDGVDPVCANIFKERGIQADQPGKLSPEELNSQISNYDGMVVRSATTVTPELLEKATNMKVIGRAGVGVDNIDIKAATTKGILVMNTPDGNTISTAEHTCGMIIALAR 115
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A7S3HLF2_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF2_9STRA) HSP 1 Score: 147 bits (371), Expect = 5.190e-39 Identity = 72/131 (54.96%), Postives = 95/131 (72.52%), Query Frame = 1
Query: 13 KLGLASRRAFHAAGGPRAARILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
++ +RR++ + A RIL D +D VC++IF++RGH D K + +L IVG YD +V+RSATK TP ++ A M++IGRAGVGIDNIDV EAT+ G++VMNTPGGNTVSTAQLA+SLL S AR
Sbjct: 12 RVAFLARRSYQTSSAANA-RILATDGVDEVCINIFKQRGHDVDFKKTMPESELVKIVGEYDALVVRSATKVTPTIIQAAKKMRIIGRAGVGIDNIDVKEATKHGMMVMNTPGGNTVSTAQLAMSLLCSLAR 141
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Match: A0A4D9D253_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D253_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.490e-38 Identity = 70/119 (58.82%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 49 AGGPRAARILCLDNIDPVCVDIFQERGHHADVKSKLSPEQLYGIVGNYDGMVIRSATKATPELLSKATNMKVIGRAGVGIDNIDVAEATRRGILVMNTPGGNTVSTAQLAISLLSSAAR 405
A P A+ILC D+IDPVC+ IF++RGH D K LS E+L I+ Y G+V+RSATK T ++++ A + VIGRAGVG+DNID+ AT++G++VMNTPGGNTVSTAQLA SLL+ +AR
Sbjct: 32 ASRPALAKILCADSIDPVCIQIFKDRGHEVDYKVGLSKEELLTIIPEYHGLVVRSATKVTGDVIAAAEKLVVIGRAGVGVDNIDLRAATKKGVMVMNTPGGNTVSTAQLAFSLLAVSAR 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122505.1719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122505.1719.1 >prot_H-elongata_contig122505.1719.1 ID=prot_H-elongata_contig122505.1719.1|Name=mRNA_H-elongata_contig122505.1719.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MALSKLGLASRRAFHAAGGPRAARILCLDNIDPVCVDIFQERGHHADVKSback to top mRNA from alignment at H-elongata_contig122505:548..1820+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122505.1719.1 ID=mRNA_H-elongata_contig122505.1719.1|Name=mRNA_H-elongata_contig122505.1719.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1273bp|location=Sequence derived from alignment at H-elongata_contig122505:548..1820+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122505:548..1820+ >mRNA_H-elongata_contig122505.1719.1 ID=mRNA_H-elongata_contig122505.1719.1|Name=mRNA_H-elongata_contig122505.1719.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig122505:548..1820+ (Himanthalia elongata Himel1 dioecious)back to top |