mRNA_H-elongata_contig12238.1712.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12238.1712.1
Unique NamemRNA_H-elongata_contig12238.1712.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: A0A6V1NVD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVD6_HETAK)

HSP 1 Score: 176 bits (446), Expect = 1.930e-48
Identity = 92/202 (45.54%), Postives = 126/202 (62.38%), Query Frame = 3 
Query:  225 VVPILGGVEAAAAAVVGHVPGIFVGLATVIWSTAIKDRVAPGSTFKPIAGAFGGFLTLLTVVMLGVRVFTAQPDSRYIDGFPTSIAHPEGCTRVAAEEGN-------KGIAVPIFTSSVDEVQAVVKSWMESQPRTSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVEEFLGYL 809
            +VPI   +EA  A V GH PG+ VGL ++ WST +K++ A          A G  L++  V +LGVR+ T  PD RY   FP  +A P GCTRVA + G        +   VP    SVD+VQ  +K W+  QPR +I  +  GY+HA+ L+ L GFPD+LGV++F+N++G+TEVW Q ELRVGQ DLGVNY RV++ L ++
Sbjct:   72 IVPIASALEAGLAVVAGHAPGVVVGLVSLAWSTVLKNKDAVRRLLPVSPEAVGTPLSVWVVALLGVRLATLAPDPRYAGAFPADVAAPIGCTRVAGDFGRWPGGGNLRPAVVPGL--SVDQVQQRIKGWILEQPRATILEEKEGYIHAQVLSNLMGFPDNLGVRVFRNAAGRTEVWAQGELRVGQGDLGVNYARVKKLLEFI 271
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: D7G2M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M0_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 8.900e-42
Identity = 78/122 (63.93%), Postives = 91/122 (74.59%), Query Frame = 3 
Query:  213 MGVEVVPILGGVEAAAAAVVGHVPGIFVGLATVIWSTAIKDRVAPGS-TFKPIAGAFGGFLTLLTVVMLGVRVFTAQPDSRYIDGFPTSIAHPEGCTRVAAEEGNKGIAVPIFTSSVDEVQA 575
            MG+EVVP+LGG+E+AAA   GH  G+ VG+ATV+WST +K  ++  S   K  AG  G  LT LTV MLGVR +TA PD+RYID FPT IAHPEGCTRVA   GNKGIAVP F +SVDEVQA
Sbjct:    1 MGLEVVPVLGGLESAAALFAGHGVGVMVGVATVLWSTVLKTPISESSGAIKSAAGVAGSVLTFLTVTMLGVRTYTAGPDTRYIDSFPTGIAHPEGCTRVAETGGNKGIAVPTFKASVDEVQA 122
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: A0A835ZGQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGQ5_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.210e-38
Identity = 97/250 (38.80%), Postives = 129/250 (51.60%), Query Frame = 3 
Query:  186 SSKTRMPAFMGVEV----VPILGGVEAAAAAVVGHVP---------GIFVGLATVIWSTAIKDRVAPGSTFKPIAGAFGGFLTLLTVVMLGVRVFTAQPDSRYIDGFPTS----------------------------IAHPEGCTRVAAEEGN-KGIAVPIFTSSVDEVQAVVKSWMESQPRTSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVEEFLGYL 809
            S+++     MG++     + I  G E   AA  GH+P         G+  G A++  S   K+ V  G+      G   G    LT+VML VRV T +PD+RY+  FP S                            IAHP GCTRVA  + N   + +P F SS  EVQ V + W+  QPRT I  D PGY+HA+ L+ LFGFPD+LG++  +   G T+VW Q ELRVG+ DLGVNY+RV+  L YL
Sbjct:   36 STRSGSMPHMGLQAPLGGITIAAGAEIILAAYSGHLPCAAARATSKGVAAGAASLALSLFFKEFVDTGA-----GGVAVGAANFLTIVMLLVRVVTIRPDARYVH-FPASMRRCASFXXXXXXXXXXXXXXXXXXXXXIAHPSGCTRVAPTKTNVSDLGMPKFKSSPAEVQEVAREWLALQPRTKIFRDEPGYVHAQALSFLFGFPDNLGIRFEETPGGGTQVWAQGELRVGEGDLGVNYKRVKALLLYL 279
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: A0A0G4G6M2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G6M2_9ALVE)

HSP 1 Score: 140 bits (354), Expect = 6.750e-36
Identity = 87/211 (41.23%), Postives = 116/211 (54.98%), Query Frame = 3 
Query:  204 PAFMGVEVVPILGGVEAAAAAVVGHVPGIFVGLATVIWSTAIKDRVAPGSTFKPIAGAFGGFLTLLTVVM-------LGVRVFTAQPDSRYIDGFPTSIAHPEGCTRVAAEEGN-KGIAVPIFTSSVDEVQAVVKSWMESQPRTSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVEEFLGYLG 812
            PA   VE V       AAA +   HVPGI  G+A+  WS    + V  GS  K    A  G + L+T V+       L VR+ +  P   +++ FP ++ HP G TRVA +  + K +  P++ + V  +Q   K W+E QPRT+I TD  GY++A  LT L GF D+  VK    + GKT VWVQSEL +G+ DLGVNY RV  FL  LG
Sbjct:    8 PAVSAVETV-------AAATSTPTHVPGIVTGVASFAWSLVGAEVV--GSLLK--GTALAGLVPLVTNVLGVWVFSLLVVRLTSRSPTKTWVEDFPQTVDHPRGATRVAPDFSSPKKLEPPVYDAPVATLQKAAKEWIEQQPRTAIVTDKEGYIYAYFLTNLMGFRDNFAVKFESQAGGKTRVWVQSELILGEGDLGVNYNRVNAFLSALG 207
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: A0A1J5TWW2_9ARCH (Uncharacterized protein n=1 Tax=Marine Group III euryarchaeote CG-Epi4 TaxID=1888998 RepID=A0A1J5TWW2_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 8.170e-14
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = 3 
Query:  390 LTLLTVVMLG----VRVFTAQPDSRYIDGFPTSIAHPEGCTRVAAEEGNKGIAV-PIFTSS-VDEVQAVVKSWMESQPRTSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVEEFLGYL 809
            +TLL + ++G    V V      +   D FP        CTR+A E  N+G  + P+ TSS V++VQ   K+ +   PRT I T+  G++H   +T LF F D + VK+F    GKT VW+QS+ R+G  DL VN RR++     L
Sbjct:    8 ITLLAITIVGYLVMVNVIYYLSPTVPRDVFPKKRFGKNNCTRIA-ENPNRGEGLKPLITSSSVEKVQESAKNIIMKMPRTKIVTEKNGFMHFVQITPLFRFYDDIFVKLF-TKGGKTNVWLQSQSRLGLHDLMVNERRIKHIYSKL 151
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: E1ZQ84_CHLVA (ARID domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQ84_CHLVA)

HSP 1 Score: 83.6 bits (205), Expect = 2.080e-13
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 3 
Query:  405 VVMLGVRVFTAQPDSRYIDGFPTSIAHPE--GCTRVAAEE--GNKGIAVPIFTSSVDEVQAVVKSWMESQPRTSIETDL-PGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVEEFL 800
            VV+L   +    PD RY D FP      +  GC+R+A     G + +      ++V +VQ+   SW++ Q +  +  D  PG+LHA+ LT  +GF D   + +  N  G+  V VQS+LR+G SDLGVN RR E+F+
Sbjct:   85 VVLLMAAIHLGSPDYRYRD-FPNECPPDKQWGCSRIAESNPHGVRHLQPLHLAATVADVQSYATSWVQDQAQARLLGDTRPGFLHARILTFFWGFADDFLISLRCNEVGQAVVEVQSQLRIGYSDLGVNGRRNEQFM 220
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: A0A1J5TR59_9ARCH (Uncharacterized protein n=1 Tax=Marine Group III euryarchaeote CG-Epi3 TaxID=1888997 RepID=A0A1J5TR59_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 2.540e-12
Identity = 49/130 (37.69%), Postives = 68/130 (52.31%), Query Frame = 3 
Query:  405 VVMLGVRVFTAQPDSRYIDGFPTSIAHPEGCTRVAAEEGNKGIAVPIFTS-SVDEVQAVVKSWMESQPRTSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVE 791
            V+M+ +  + A    R  + FP        CTR+A          PI T+ S +EVQ +VK  +   PR  I T+  G+LH   +T LF F D L +KIF    G T VW+QS+ R+G  DL VN RR++
Sbjct:   19 VIMINLIYYLAPTIPR--ENFPAKRFGKNNCTRIADNPNRGKDMKPIITNLSENEVQIIVKDIIAKMPRMKIITEKEGFLHFVQITPLFRFYDDLFIKIFVKD-GMTNVWLQSQSRLGLYDLLVNERRIK 145
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: A0A2E1HMP6_9EURY (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2E1HMP6_9EURY)

HSP 1 Score: 74.3 bits (181), Expect = 3.720e-12
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 3 
Query:  405 VVMLGVRVFTAQPDSRYIDGFPTSIAHPEGCTRVAAEEGNKGIAV-PIFT-SSVDEVQAVVKSWMESQPRTSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVEEFLGYL 809
            +VM+ V  + +    R  D FP        CTR+A E  N+G  + P+ T SS++EVQ   K+ + + P T I T+  G++H   +T LF F D + VK+F    GKT +W+QS+ R+G  DL VN +R++     L
Sbjct:   22 LVMINVIYYLSPTVPR--DVFPKKRFGRNNCTRIA-ENPNRGEGMKPLITLSSIEEVQENAKNIIINMPXTRIVTEKNGFMHFVQITPLFRFYDDIFVKLF-TEDGKTNIWLQSQSRLGLHDLMVNEKRIKHIYSKL 154
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: A0A2D9X0E1_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D9X0E1_9EURY)

HSP 1 Score: 70.9 bits (172), Expect = 5.680e-11
Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  459 DGFPTSIAHPEGCTRVAAEEGNKGIAVPIFTS-SVDEVQAVVKSWMESQPRTSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVEEFLGYL 809
            + FP        CTRVA          PI T  S+++VQ   K  +    RT I TD  G++H   +T LF F D + +KIF  ++ KT +W+QS+ R+G  DL VN RRV+     L
Sbjct:   35 NNFPLKRFGRNNCTRVAXNPNRGEGMSPIITDMSMEKVQDATKKIINKMQRTKIVTDNAGFMHFVQITPLFRFHDDIFIKIFSENN-KTNIWLQSQSRLGLHDLLVNERRVKHIYNEL 151
[Close]
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Match: A0A2E5ZTI7_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5ZTI7_9EURY)

HSP 1 Score: 70.9 bits (172), Expect = 7.260e-11
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 3 
Query:  408 VMLGVRVFTAQPDSRYIDGFPTSIAHPEGCTRVAAEEGNKGIAV-PIFTS-SVDEVQAVVKSWMESQPRTSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQSDLGVNYRRVE 791
            VM+ V  + A P  +Y + FP        CTRVA E  N+G  + PI T+ +++E+Q  +K+ + +  R  I  +  G++H   +T  F F D + VKIF+N+ GKT VW QS+ R+G  D  +N +RVE
Sbjct:   31 VMINVIYYLA-PTIKY-EEFPEKRFGKNNCTRVA-ENPNRGRNMKPIVTNLTINEIQNNLKNIIANMQRVKIVNEKKGFIHFTQITPFFRFYDDIFVKIFENN-GKTNVWFQSQSRLGLYDFQINEKRVE 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12238.1712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1NVD6_HETAK1.930e-4845.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7G2M0_ECTSI8.900e-4263.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGQ5_9STRA2.210e-3838.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4G6M2_9ALVE6.750e-3641.23Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A1J5TWW2_9ARCH8.170e-1437.67Uncharacterized protein n=1 Tax=Marine Group III e... [more]
E1ZQ84_CHLVA2.080e-1337.23ARID domain-containing protein n=1 Tax=Chlorella v... [more]
A0A1J5TR59_9ARCH2.540e-1237.69Uncharacterized protein n=1 Tax=Marine Group III e... [more]
A0A2E1HMP6_9EURY3.720e-1236.50Uncharacterized protein n=3 Tax=cellular organisms... [more]
A0A2D9X0E1_9EURY5.680e-1137.29Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A2E5ZTI7_9EURY7.260e-1137.69Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12238contigH-elongata_contig12238:468..5019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue7.6e-14
Seed eggNOG ortholog554065.XP_005843991.1
KEGG koko:K07874,ko:K11763
KEGG Pathwayko05134,map05134
EggNOG free text desc.DNA binding
EggNOG OGsKOG2744@1,KOG2744@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1499
Ec32 orthologEc-11_002730.1
Exons6
Model size1302
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12238.1712.1prot_H-elongata_contig12238.1712.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12238 943..4861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.3678296-UTR-H-elongata_contig12238:467..9421622929720.3678296-UTR-H-elongata_contig12238:467..942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12238 468..942 -
1691679131.9513924-UTR-H-elongata_contig12238:467..9421691679131.9513924-UTR-H-elongata_contig12238:467..942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12238 468..942 -
1622929720.4712574-UTR-H-elongata_contig12238:4861..50191622929720.4712574-UTR-H-elongata_contig12238:4861..5019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12238 4862..5019 -
1691679132.0145974-UTR-H-elongata_contig12238:4861..50191691679132.0145974-UTR-H-elongata_contig12238:4861..5019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12238 4862..5019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.3848147-CDS-H-elongata_contig12238:942..10801622929720.3848147-CDS-H-elongata_contig12238:942..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 943..1080 -
1691679131.961755-CDS-H-elongata_contig12238:942..10801691679131.961755-CDS-H-elongata_contig12238:942..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 943..1080 -
1622929720.3986518-CDS-H-elongata_contig12238:1511..16281622929720.3986518-CDS-H-elongata_contig12238:1511..1628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 1512..1628 -
1691679131.9700482-CDS-H-elongata_contig12238:1511..16281691679131.9700482-CDS-H-elongata_contig12238:1511..1628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 1512..1628 -
1622929720.414031-CDS-H-elongata_contig12238:2717..28111622929720.414031-CDS-H-elongata_contig12238:2717..2811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 2718..2811 -
1691679131.9786685-CDS-H-elongata_contig12238:2717..28111691679131.9786685-CDS-H-elongata_contig12238:2717..2811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 2718..2811 -
1622929720.4289203-CDS-H-elongata_contig12238:3556..37181622929720.4289203-CDS-H-elongata_contig12238:3556..3718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 3557..3718 -
1691679131.9876206-CDS-H-elongata_contig12238:3556..37181691679131.9876206-CDS-H-elongata_contig12238:3556..3718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 3557..3718 -
1622929720.446516-CDS-H-elongata_contig12238:4255..43471622929720.446516-CDS-H-elongata_contig12238:4255..4347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 4256..4347 -
1691679131.9966357-CDS-H-elongata_contig12238:4255..43471691679131.9966357-CDS-H-elongata_contig12238:4255..4347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 4256..4347 -
1622929720.4612007-CDS-H-elongata_contig12238:4795..48611622929720.4612007-CDS-H-elongata_contig12238:4795..4861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 4796..4861 -
1691679132.0057015-CDS-H-elongata_contig12238:4795..48611691679132.0057015-CDS-H-elongata_contig12238:4795..4861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12238 4796..4861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12238.1712.1

>prot_H-elongata_contig12238.1712.1 ID=prot_H-elongata_contig12238.1712.1|Name=mRNA_H-elongata_contig12238.1712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
MPWSRNTGRSSKTRMPAFMGVEVVPILGGVEAAAAAVVGHVPGIFVGLAT
VIWSTAIKDRVAPGSTFKPIAGAFGGFLTLLTVVMLGVRVFTAQPDSRYI
DGFPTSIAHPEGCTRVAAEEGNKGIAVPIFTSSVDEVQAVVKSWMESQPR
TSIETDLPGYLHAKCLTLLFGFPDSLGVKIFKNSSGKTEVWVQSELRVGQ
SDLGVNYRRVEEFLGYLGMKLS*
back to top

mRNA from alignment at H-elongata_contig12238:468..5019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12238.1712.1 ID=mRNA_H-elongata_contig12238.1712.1|Name=mRNA_H-elongata_contig12238.1712.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4552bp|location=Sequence derived from alignment at H-elongata_contig12238:468..5019- (Himanthalia elongata Himel1 dioecious)
CTGCAGGAGCTTCGCTCGTCAGGCACGGTCTCCACCGCCAGTGCTCTTTC
CTTTCGCCAGACGCAAGACAGTCCTTTGTCGCTTTTTCGTCTCTCCGAGG
AGGCGGGATCGACAACGGGGCAAGGGGCGGCAGCAGCGACGGCGGAGACA
ATCGCCGTATGCCGTGGTCGCGGAATACGGGCCGCAGCAGCAAGACTCGG
ATGCCGGCGTTCATGGGCGTTGAGGTGAGCCTGGAAAGGGTGGATGTTCT
GGAAGGTTTGATTGGGGGGAATAGGGGGCGTAAAGATGAGTCACCATACT
GTATCTTAAGTTCTACGAGCGGCGCAGGTTGGCGTCGAATCACCAAACGA
CCACGCGTTAAAATATGCCGTTGCACAGATCAGATACTGTACCATCGTTG
AGGTTGCGACCACGCGTTTGATTATTTATTTGTATCTTTAAAGAGTAAAC
ATGCAAAAATATTGCAGTACCACCCGAAGGCAAGGCAGCGCGACAAACAT
CATTTCAAGCTCTCCGCAATCCATCCACGGGTGTTGATGGAATGCCCGAC
CGACCATACCGTCGCGTTGCACTCGTGAGGGTATATACATATATGTATAT
ATATATATATATTATACATACATACATCGCATGATTGTTTTGCGTCCGGT
GGTGACGTTGGCTCCGCCACAGGTTGTTCCTATCCTGGGCGGGGTGGAGG
CAGCCGCCGCGGCCGTTGTTGGCCACGTTCCCGGAATTTTCGTCGGCCTG
GCTACCGTAATTTGGTGAGGACAATAGAGAGCGCCACATTAGTTGATTGA
CAGTTGAGTACCCTGTCTCAAATATCACCCACGAAATAATCGAAAATCGA
AAATTAGAGCTGTGTTCTGTTCTGTTATGTTCTGTTGATCGCATTACACC
TGCGTTAGTCGTCGTGAGTAGAATGTCTTCTCTCGGTCTCTTCTACCGTT
CCATGAAACGACCCTTAAAACATGTTGCACCACGTAGGATTCCGTGGGTA
TCGTTGCCATGCGCGGGCTGGGTTCTTCCCCTTGACCGTCCGCGAAGATT
AGTGGTCGCTGCAATCAATGCCTATCGAACGCACGATCGACGATCGTTTT
TTTCTTGCCTCGTACTTTTTTTGCCTGTATATTCTTGTCCCCGACTTTTC
TCCTCGGTGACCCTTTGTCTCTGTCTATCCGGTCAGGACTGTCATCTTCC
CTAACAAACAAACAAACAAACAAATACGTTCCCCAAAAACATGGGGTGAC
CGCGGTAAATGGATGTTTGGGGGGTGGTGTGTGTGTGTATTGTACGCGAA
GGTCGACGGCTATCAAGGACCGTGTTGCACCGGGCTCGACGTTCAAGCCC
ATCGCCGGGGCCTTCGGGGGATTCCTGACGCTTCTTACGGTCGTCATGCT
AGGGGTACGGGTCTTCACCGCCCAACCTGACTCTCGCTACATTGATGGTT
TTCCGACTAGCATGTGAGGGGGCTGAGGTGTCCGTACGCGGCTCGTGAAA
GGATTACGTCAAGGCAGGCCGCCGGCACCGTGCCGTACCGTAATATTCAG
TTATTTAACTCTCCGTTTCGAGCTTTGGTTTTACGCGCGTTTATTGATCA
AGCGACAAAGTGCAGATGTTTTGAAGACCGGCTTGCTAGTTCGAGGTTAT
TCTGGTGCTGCTGCTGTAGGTAGTGCTAGATGGAATCGTGTATAGAGCTG
AGGCCCAGCCGAGGCCTGAAACAAAATCATGGTCCGATTTGTGCCACGTT
TTAGGGATGGTGTTGTACAGTTATACACGACATGTATGTGTACTAAAACA
GCAGCGATATTCGAGGAAATGGGGCGCGTAGCATCCGTGCGCCTCTCTCC
TACTCGCCACAAGATGCTATCACTATGTCTCGAACAATACGCGAGATGGT
GGGGGGAGAACTCGGGACGGCATCGGCCACGGCCCGACGCACAGGCCTCC
ACCCGCTAGGTGGCGACAGGGCAGAGAGTAATAGTACGCTCAAGCCCTTC
ATCGTCAACATAATAAGGGGGGTATAGCGCGTGGTACGCGTTCGTGCGGG
CACAAGCCAGCGTTTTCGACCTGCAATGATCGGCTTGTTATATACCAGAT
AAGGATTTCGTCTCTCGATTGTACTCTGCTTCTCTTCCCTCCTCTTCCTC
CTCCTTTGGCCGGTGCTACTGTTCGTCGATCTCTTACATGGTGTGTCGCA
CAAAACAGTGCCCACCCGGAAGGCTGCACGCGAGTCGCCGCGGAGGAAGG
CAACAAGGGCATAGCGGTGCCGATCTTCACCTCCAGCGTCGATGAAGTGC
AGGTCTGTCTGTCTGTTCGTCCGTCTGTCTCTTTCCGTGTCTTCTCTGGG
TCTTTGTGTGTCGTGTAAACACCAGCTATTTGATCGGTGTTGGAAGATTT
GCCGCTGTGTACAACAGCCAAAAAGGTTGCCATTCTCTCAGCTATCGCTT
AAGGCTGCGTTCCCAAGTATTTGACTGTTTATTTGGTATTATGACGGTTC
GGAGCGCGTTCGGCAAACTAGGAAACAATTCATTTCTTGCGCTGTTTGCA
CAACAGTACTACCACACCATGGCCACTGCTTGTTGCGTAGAAGTGGGTTC
TTTGTTTGTCCTAGTTGTCGTTTCTGGTGGCCGAGTTTTCGCTCGTCTCT
GGGAGGTGGTGGGGCTGTGGTGATACGCCTCAACCCAAATCGCGGCCTGG
TTCGGCCTGTTTTTTCAATTGCCGTTCTCTCGACGCACATAGGCAACACA
CCAGAATCCTCGCGCGTGTATGCATTAATCACGATGCTCTACTAGATGCC
AGTTTAATGGCGGCCGTGGGGGGTTGTATAGGGTCAAGTCCACCCCACCT
TGGCTGAAATCAGCTTGAAAAATCAGTTTGAACCCCAGTTTGAGCTCAGT
GTTTATCATCACCGAAGAAAAGTTCTACCGCGCACGCCGAACAGCAAAAA
ACAGGCAAGACAACATAACAGCCCATACAGCCATGCTCGTGCCTTGTGCA
TCCACCATAGCACCGTGAGAGCGGAGCACCGAGCGTTCATCCAACCTGCT
CCATTGTTGGGCTGCCCGGTTTATTCGCTGGAGACCAGTGAAACCGTCAC
TTTTTGCTGAAATACGTAAAAAAGGGTACTTTTTGGCCCTATGGATGGGA
ACGCAGCCTTAAATCTACGCGGGTTCGAAGTACACCCAATACTTAAGGAG
TACGTAAGTCCTCGGTACGGCCAAGCTCTTAACCGTACGGAGATCCCATC
GATCCTCATCCCCCCTTGCTGGTGGCCGTAATATAGTAAAAATCCTTTCT
CGGGACCGTTGGGGTATTTAACGAGGGAGGCACGACTTAAAAACAAAACG
AATCGCGTGTTTTATGGGGGGGTTTTGTTCCCCCACCACAGGCAGTGGTA
AAGTCTTGGATGGAATCGCAGCCGAGGACATCGATCGAGACAGACCTCCC
CGGTTACCTGCACGCCAAGTGCCTCACGCTCTTGTTCGGGTTTCCGGACA
GCCTTGGGGTGAGACAGCAGTGCCGATCACGGCGTAGCCGACCTATGTCG
TCGATGCCTGTACCGATGCGAACTGTAATGTCCCAGTGTATCGATACGGA
TCATACCGTTTCTGTTCCTCTTGAGCGTGTGCATGTGTAATCCACCAACC
AACCACAAGAACCATCAACAGCCAGTCACAGTGGGTGCTGAAATCCGTCT
AGAGCGAGCCTACGAGTGGCAAAAAAAACAGGAATCGATCAATACACCCA
GGAGCTTGACCGCAAAGCTATTACAGTACATGTTTAATCTTATCATCCCT
CCTTGATCCGACAACCCACTAACTGCCGTGCGTCCCAAGATGGCTTGAGT
AAAGGTGTGAATCGTGTATAAAATGACCGCACGTACTGCTTCGACATTAG
TGGGAATGACGTGTCTTTTCCCCACTTGTGTTTCTCCAGGTGAAGATTTT
CAAAAACAGCTCGGGCAAGACGGAAGTCTGGGTGCAATCTGAGCTCCGCG
TGGGGCAAAGCGACCTCGGCGTGAATTACAGGCGCGTCGAGGAGTTCCTG
GGGTACCTGGGCATGAAGTTGTCTTGACAAGCTGGTTTTCCCCTAACGTA
TGAAGCAGCAAACACCTGGGCAAGGCGACCTCGACGTGAAGTTCCTAGGG
TACCTGGGCGTGACATTGTCTTGACAAGCTTCTTTTCCCTTAACGTATGA
AGCGGCAAGCACGTTGCACTGAAGTTGCGCTTGATTAAGTATTGGTTTGT
TGAGCTTTTGGCGATTTTGTTTTTTTGAAAGTTGGGACGTAAAAGTACTA
CTAGAGCTACTCCTCTCCGGTCCGAGGCTATGATTTTGATATCACAGCTG
TGATGTGTATCTGTGTCGCTGCCAAGCTTTTCAAGGGGATTTAGAGTTAT
AGCTAAAGCCAAAAATATGAATCCATGGAATTACAAGGGCATATTTAGGA
AGCGCTTGAGAGATAATGACGAGTGTGGTAGCGATCGATACCCCCGAAAG
CTTAACGAAGACCAAATAGCTAGAGCTCTTAATAGTCAACTATAACATGC
GC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12238:468..5019-

>mRNA_H-elongata_contig12238.1712.1 ID=mRNA_H-elongata_contig12238.1712.1|Name=mRNA_H-elongata_contig12238.1712.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig12238:468..5019- (Himanthalia elongata Himel1 dioecious)
ATGCCGTGGTCGCGGAATACGGGCCGCAGCAGCAAGACTCGGATGCCGGC
GTTCATGGGCGTTGAGATGCCGTGGTCGCGGAATACGGGCCGCAGCAGCA
AGACTCGGATGCCGGCGTTCATGGGCGTTGAGGTTGTTCCTATCCTGGGC
GGGGTGGAGGCAGCCGCCGCGGCCGTTGTTGGCCACGTTCCCGGAATTTT
CGTCGGCCTGGCTACCGTAATTTGGTTGTTCCTATCCTGGGCGGGGTGGA
GGCAGCCGCCGCGGCCGTTGTTGGCCACGTTCCCGGAATTTTCGTCGGCC
TGGCTACCGTAATTTGGTCGACGGCTATCAAGGACCGTGTTGCACCGGGC
TCGACGTTCAAGCCCATCGCCGGGGCCTTCGGGGGATTCCTGACGCTTCT
TACGGTCGTCATGCTAGGGGTACGGGTCTTCACCGCCCAACCTGACTCTC
GCTACATTGATGGTTTTCCGACTAGCATGTCGACGGCTATCAAGGACCGT
GTTGCACCGGGCTCGACGTTCAAGCCCATCGCCGGGGCCTTCGGGGGATT
CCTGACGCTTCTTACGGTCGTCATGCTAGGGGTACGGGTCTTCACCGCCC
AACCTGACTCTCGCTACATTGATGGTTTTCCGACTAGCATTGCCCACCCG
GAAGGCTGCACGCGAGTCGCCGCGGAGGAAGGCAACAAGGGCATAGCGGT
GCCGATCTTCACCTCCAGCGTCGATGAAGTGCAGTGCCCACCCGGAAGGC
TGCACGCGAGTCGCCGCGGAGGAAGGCAACAAGGGCATAGCGGTGCCGAT
CTTCACCTCCAGCGTCGATGAAGTGCAGGCAGTGGTAAAGTCTTGGATGG
AATCGCAGCCGAGGACATCGATCGAGACAGACCTCCCCGGTTACCTGCAC
GCCAAGTGCCTCACGCTCTTGTTCGGGTTTCCGGACAGCCTTGGGGCAGT
GGTAAAGTCTTGGATGGAATCGCAGCCGAGGACATCGATCGAGACAGACC
TCCCCGGTTACCTGCACGCCAAGTGCCTCACGCTCTTGTTCGGGTTTCCG
GACAGCCTTGGGGTGAAGATTTTCAAAAACAGCTCGGGCAAGACGGAAGT
CTGGGTGCAATCTGAGCTCCGCGTGGGGCAAAGCGACCTCGGCGTGAATT
ACAGGCGCGTCGAGGAGTTCCTGGGGTACCTGGGCATGAAGTTGTCTTGA
GTGAAGATTTTCAAAAACAGCTCGGGCAAGACGGAAGTCTGGGTGCAATC
TGAGCTCCGCGTGGGGCAAAGCGACCTCGGCGTGAATTACAGGCGCGTCG
AGGAGTTCCTGGGGTACCTGGGCATGAAGTTGTCTTGA
back to top