mRNA_H-elongata_contig12236.1710.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 5.180e-20 Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query: 3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
SG WS RY CVPI+ V+T+W G + R QLPL LCWAITMHKSQGQT KAV DLG E GLTFV
Sbjct: 155 SGGEWSSQERYRRCVPISPVDTTWQDGGTQ----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 226
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 2.370e-19 Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query: 3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
SG WS RY CVPI+ V+T+W G + R QLPL LCWAITMHKSQGQT KAV DLG E GLTFV
Sbjct: 329 SGGEWSSQERYRRCVPISPVDTTWQDGGTQ----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 400
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 2.520e-19 Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query: 3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
SG WS RY CVPI+ V+T+W G + R QLPL LCWAITMHKSQGQT KAV DLG E GLTFV
Sbjct: 46 SGGEWSSQERYRRCVPISPVDTTWQDGGTQ----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 117
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 3.140e-19 Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query: 3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
SG WS RY CVPI+ V+T+W G + R QLPL LCWAITMHKSQGQT KAV DLG E GLTFV
Sbjct: 1460 SGGEWSSQERYRRCVPISPVDTTWQDGGTQ----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 1531
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 2.080e-12 Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = -2
Query: 3 GDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 149
G++ + R QLPL LCWAITMHKSQGQT KAV DLG E GLTFV
Sbjct: 7 GEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 55
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 3.100e-12 Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = -2
Query: 3 TGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 152
+G++ + R QLPL LCWAITMHKSQGQT KAV DLG E GLTFV
Sbjct: 4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 53
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 3.970e-12 Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = -2
Query: 3 WSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 161
WS + + R QLPL LCWAITMHKSQGQT KAV DLG E GLTFV
Sbjct: 67 WSTGRKDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 119
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 5.480e-12 Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = -2
Query: 3 TGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 152
+G++ + R QLPL LCWAITMHKSQGQT KAV DLG E GLTFV
Sbjct: 4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFV 53
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: A0A6S7JUH6_PARCT (ATP-dependent DNA helicase PIF1-like n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JUH6_PARCT) HSP 1 Score: 65.9 bits (159), Expect = 2.050e-11 Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = -2
Query: 3 SGPAWSGDPRYEVCVPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 230
SGPA+ CVP+ W A G K SR+Q+PL L +A+T+HKSQGQT K V DLGK E AG TFV
Sbjct: 18 SGPAFL--DACSKCVPVPPKVFEWVADG---KYLSRQQVPLRLRYAMTIHKSQGQTLTKTVVDLGKGEKVAGCTFV 88
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Match: UPI001069C52E (ATP-dependent DNA helicase PIF1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069C52E) HSP 1 Score: 68.6 bits (166), Expect = 2.210e-11 Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = -2
Query: 3 PAWSGDPRYEVC---VPIAAVETSWSATGDERKQESREQLPLGLCWAITMHKSQGQTAKKAVFDLGKSEGTAGLTFV 224
PA+SG + C +P+ W A G K SR+QLPL L +A+T+HKSQGQT KAV DLGK E AG TFV
Sbjct: 222 PAYSGPAFLQECSKCIPVPPRLFEWMADG---KYLSRQQLPLRLRYAMTIHKSQGQTLTKAVVDLGKGERVAGCTFV 295 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12236.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12236.1710.1 >prot_H-elongata_contig12236.1710.1 ID=prot_H-elongata_contig12236.1710.1|Name=mRNA_H-elongata_contig12236.1710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp LTKVSPAVPSDFPRSNTAFFAVCPWLLCMVIAQHSPRGSCSRDSCFLSSPback to top mRNA from alignment at H-elongata_contig12236:5734..6051+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12236.1710.1 ID=mRNA_H-elongata_contig12236.1710.1|Name=mRNA_H-elongata_contig12236.1710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig12236:5734..6051+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12236:5734..6051+ >mRNA_H-elongata_contig12236.1710.1 ID=mRNA_H-elongata_contig12236.1710.1|Name=mRNA_H-elongata_contig12236.1710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig12236:5734..6051+ (Himanthalia elongata Himel1 dioecious)back to top |