mRNA_H-elongata_contig12236.1709.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE) HSP 1 Score: 166 bits (419), Expect = 4.830e-46 Identity = 106/197 (53.81%), Postives = 128/197 (64.97%), Query Frame = 1
Query: 1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSA-----------------------------GKPFRS----DQQVQLRVERLIRRQPTT----DNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGT-TEQSALGKLGLSTAIGAAEQSERMTVPHV 477
TRAPR+Y+ G+ ++H+GQ V+L+P+QTRYL+SVMRLR+GSPVRVFDG +GE+ A G+ RS D+ V+LRVE L RRQP D E PEIEL+FAPIRK RLK+LVEKAVEVGASRLTPVLTARTQ G ++ S L +LG TA+ AAEQ ERMTVP V
Sbjct: 141 TRAPRVYLNGA--NLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPV 335
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI) HSP 1 Score: 117 bits (294), Expect = 4.340e-29 Identity = 81/159 (50.94%), Postives = 96/159 (60.38%), Query Frame = 1
Query: 103 MRLREGSPVRVFDGFSGEYSA---------------------------GKPFRS----DQQVQLRVERLIRRQPTTDNAD----EQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGT-TEQSALGKLGLSTAIGAAEQSERMTVP 471
MRLR+G+PVRVFDG +GE+ A G+ RS ++ ++LRVE L RRQP E PEIEL+FAPIRK RLK+LVEKAVEVGASRLTPVLTARTQ G ++ S L +LG TA+ AAEQ ERMTVP
Sbjct: 1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVP 159
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A259M1G2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Hyphomonas sp. 34-62-18 TaxID=1970392 RepID=A0A259M1G2_9PROT) HSP 1 Score: 97.4 bits (241), Expect = 1.140e-21 Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 1
Query: 10 PRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGD 483
PRLYV + V+ L +Q+ YL+ V+RL EG+PVR+F+G GE+SA S ++ ++ R+QP AD + L+FAP++K + +++EKA E+GA+R+ PVLT RTQ T K+ L AAEQ+ER+ +P + +
Sbjct: 5 PRLYVDAP---LAESGVIALDDEQSNYLLRVLRLEEGAPVRLFNGRDGEWSAAVRKVSGKRAEVIPAAQTRKQPEHAGAD-------LTLLFAPVKKDQTDLIIEKATELGAARMVPVLTERTQTRTVRTDRFRKIALE----AAEQTERLGLPEIAE 148
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: F0YSM2_AURAN (16S rRNA (uracil(1498)-N(3))-methyltransferase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSM2_AURAN) HSP 1 Score: 94.4 bits (233), Expect = 4.020e-21 Identity = 70/172 (40.70%), Postives = 93/172 (54.07%), Query Frame = 1
Query: 1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQ---PG--MPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGL---STAIGAAEQSERMTVPHVGDTAE 492
T APRL++G V ELSP Q RY+ +VMRLREG +R F GE++ VE RR T A + PG P ++L FAP+RK R +L+EKAVE+GA+RL PV T R E+++L LG ++A+ AAEQ ER+ VP V D +
Sbjct: 26 TNAPRLWLGDDRT-ADAASVWELSPAQHRYVATVMRLREGDALRCFGAAMGEWACA------------VETTTRRGTTVAAAVQTRPPPGDETPRLDLYFAPLRKKRTSLLIEKAVELGATRLAPVKTERV-----ERASLAALGAGIHASAVEAAEQCERLRVPVVEDVVD 179
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A4Q5XQ17_9PROT (Ribosomal RNA small subunit methyltransferase E n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A4Q5XQ17_9PROT) HSP 1 Score: 95.5 bits (236), Expect = 6.050e-21 Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = 1
Query: 1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHV 477
+ PRL+V + G + DQ YL V+RL G PVRVF+G GE+ A + +L + +R EQ +P++ L+FAP++K R LVEKAVE+GA+ + PV+T RT A T L +L AI AAEQ+ER+ VP V
Sbjct: 2 SATPRLHVAPD---LSEGADTPIDGDQAHYLTRVLRLEIGDPVRVFNGRDGEFDASVSASTKSTARLTLGARVR---------EQAAVPDLWLLFAPLKKERTDFLVEKAVELGAAEILPVITERTDAKTVRVDRLARL----AIEAAEQTERLDVPPV 144
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A399RFL3_9PROT (Ribosomal RNA small subunit methyltransferase E n=4 Tax=Henriciella TaxID=453849 RepID=A0A399RFL3_9PROT) HSP 1 Score: 94.7 bits (234), Expect = 1.210e-20 Identity = 63/161 (39.13%), Postives = 88/161 (54.66%), Query Frame = 1
Query: 1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGD 483
+ PRL++ + G+ V LS +Q Y++ VMRL EG+PVRVF+G GE+ A S ++ + ER R P + D + L FAP++K R +VEKA E+G R+ PV+T RTQ+ + L S I AAEQ+ERM VP V D
Sbjct: 5 SSVPRLFIDAG---LSSGEKVSLSDNQANYILRVMRLGEGAPVRVFNGRDGEWIAAVVPESGKRASIVPERQTR--PQVETLD-------LTLFFAPLKKARTDFVVEKACELGVRRIQPVMTERTQSSRVRRDRLQ----SVVIEAAEQTERMDVPEVFD 149
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: UPI000685ABB1 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Henriciella marina TaxID=453851 RepID=UPI000685ABB1) HSP 1 Score: 93.6 bits (231), Expect = 3.150e-20 Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 1
Query: 10 PRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGD 483
PRL+V ++ G+ LS +Q+ Y++ VMRL EG PVRVF+G GE+ A S ++ + +R R Q T P++ L FAP++K R +VEKA E+G ++ PV+T RTQ+ + L S I AAEQ+ERM VP V D
Sbjct: 5 PRLFVDSP---LNEGEKAALSDNQSNYVLRVMRLSEGDPVRVFNGRDGEWVARLVQESGKRASIVPDRQTRPQVET---------PDLTLFFAPLKKTRTDFVVEKACELGVRKIQPVMTERTQSSRVRRDRLQ----SVVIEAAEQTERMDVPEVFD 146
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A3D6A1M1_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Maricaulaceae TaxID=2800061 RepID=A0A3D6A1M1_9PROT) HSP 1 Score: 92.4 bits (228), Expect = 8.990e-20 Identity = 63/158 (39.87%), Postives = 91/158 (57.59%), Query Frame = 1
Query: 10 PRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGD 483
PRLYV + G + L +Q YL++VMR GSPVRVF+G GE+ A S + L+VE +R EQ G+P + L FAP++K R +VEKA E+GA+ + PV+T RTQ+ E+ +L ++ A AAEQ+ER+ +P V +
Sbjct: 5 PRLYVDAP---LDDGAELILPREQAHYLVNVMRREAGSPVRVFNGRDGEWQAVVADASRKGASLQVETRLR---------EQVGVPPLRLCFAPVKKARTDFIVEKATELGAAVIQPVITRRTQS---ERVRTDRL-MALATEAAEQTERLCLPVVSE 146
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A5M6Z8R7_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6Z8R7_9PROT) HSP 1 Score: 92.0 bits (227), Expect = 1.010e-19 Identity = 63/163 (38.65%), Postives = 87/163 (53.37%), Query Frame = 1
Query: 10 PRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGDTAEPL 498
PRL+V ++ G + L DQ YL+SVMR + G VRVF+G GE+ A ++ +L + TD +Q P++ L FAP++K R +VEKA E+GA + PV+T RT A LG L A AAEQ+ER+ VP +G EPL
Sbjct: 5 PRLFVDAP---LNQGAALILERDQAHYLVSVMRRQPGDGVRVFNGRDGEWRAVLETSGKREARLAL---------TDRLRDQTAGPDLTLYFAPVKKARTDFIVEKATELGARAIIPVITRRTNAERVRTDRLGAL----AREAAEQTERLDVPQIG---EPL 148
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Match: A0A0P7V371_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Oceanicaulis sp. HLUCCA04 TaxID=1666904 RepID=A0A0P7V371_9PROT) HSP 1 Score: 92.0 bits (227), Expect = 1.260e-19 Identity = 62/166 (37.35%), Postives = 93/166 (56.02%), Query Frame = 1
Query: 1 TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSGEYSAGKPFRSDQQVQLRVERLIRRQPTTDNADEQPGMPEIELMFAPIRKHRLKILVEKAVEVGASRLTPVLTARTQAGTTEQSALGKLGLSTAIGAAEQSERMTVPHVGDTAEPL 498
+ PRL+V + G + L +Q YL++VMR G+PVR+F+G GE+ A S + L VE +R EQ G+P + L FAP++K R +VEKA E+GAS + PV+T RTQ+ E+ +L ++ A A EQ+ER+ +P D +EP+
Sbjct: 2 STTPRLFVDAP---LAEGAHITLPREQAHYLINVMRRETGAPVRIFNGRDGEWQAVVSEASRKSAVLAVESRLR---------EQTGVPPLRLCFAPVKKSRTDFIVEKATELGASAIQPVITRRTQS---ERVRTDRL-MALATEATEQTERLCLP---DVSEPV 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12236.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12236.1709.1 >prot_H-elongata_contig12236.1709.1 ID=prot_H-elongata_contig12236.1709.1|Name=mRNA_H-elongata_contig12236.1709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp TRAPRLYVGGSGFHIHIGQVVELSPDQTRYLMSVMRLREGSPVRVFDGFSback to top mRNA from alignment at H-elongata_contig12236:241..783- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12236.1709.1 ID=mRNA_H-elongata_contig12236.1709.1|Name=mRNA_H-elongata_contig12236.1709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig12236:241..783- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12236:241..783- >mRNA_H-elongata_contig12236.1709.1 ID=mRNA_H-elongata_contig12236.1709.1|Name=mRNA_H-elongata_contig12236.1709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig12236:241..783- (Himanthalia elongata Himel1 dioecious)back to top |