mRNA_H-elongata_contig122326.1706.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122326.1706.1
Unique NamemRNA_H-elongata_contig122326.1706.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: D8LBP8_ECTSI (Nudix (Nucleoside diphosphate linked moiety X)-type motif 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP8_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 5.750e-71
Identity = 114/168 (67.86%), Postives = 130/168 (77.38%), Query Frame = 1
Query:    1 SGCVLNDEREVLLVKDKRKNATWKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQFGNSDLYFICRLA-PKEGGVTKITKCDHEIEDVCWMPLEQFQKETRHSMLAVVADMLDKPEDKELTRWGPGHTHERVSLSERPVDSVLLGRAPYYLYHRKT 501
            +GCV+N + EVLLVKDK K A WKFPGGLAD GEGIGEAA REV EETGV  EFRS+LSMRHQH+MQFGNSDLYFICRL  P++ G   I KC+HEI D CWMPL+QF+K+TRHSMLAVVADML+KPE+KELTR          SL E    S +  RAPY+LYHR +
Sbjct:  182 AGCVMNSQDEVLLVKDKHKGAMWKFPGGLADVGEGIGEAAVREVWEETGVMTEFRSVLSMRHQHEMQFGNSDLYFICRLMLPEDTGALDINKCNHEIADACWMPLDQFKKQTRHSMLAVVADMLEKPEEKELTR----------SLHE----SAIPDRAPYFLYHRHS 335          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: A0A836C878_9STRA (Nucleoside diphosphate linked moiety X-type motif 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C878_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.820e-39
Identity = 77/174 (44.25%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    1 SGCVLNDEREVLLVKDKRKNATWKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQFGNSDLYFICRLAPKEG-------GVTKITKCDHEIEDVCWMPLEQFQKETRHSMLAVVADMLDKPEDKELTRWGPGHTHERVSLSERPVDSVLLGRAPYYLYHRKT 501
            +GCVL+    VL+VK++   A WKFPGGLA+ GE +G AA REV EETGV + F  +L+ R QH MQFGNSDLYFICR+  + G          ++  C HEI +  WMPLE+F  +  H M+ VVA ML +         GP   HE   L E   +S+   R PY +Y+  +
Sbjct:  165 AGCVLDARGRVLVVKERHPRALWKFPGGLAEAGEDLGAAAAREVEEETGVRSAFAGLLAFRQQHAMQFGNSDLYFICRMTRRTGEXXXXXXXXQELRPCAHEIAEARWMPLEEFAAQNTHPMMGVVAKMLME---------GP-QNHE---LKEETQESIFGSRPPYKMYYHAS 325          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: C3ZV31_BRAFL (Nudix hydrolase domain-containing protein (Fragment) n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZV31_BRAFL)

HSP 1 Score: 119 bits (298), Expect = 7.730e-31
Identity = 55/110 (50.00%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    1 SGCVLNDEREVLLVKDKRKN---ATWKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQFGNSDLYFICRLAPKEGGVTKITKCDHEIEDVCWMPLEQF 321
            +G V+ND+ EVL++++K  +   A WK PGGLA+PGE + + A REVLEETGV+AEF S+L  RHQH+  FG SD+YF+C + PK      IT C+ E+    WMP E++
Sbjct:   66 AGFVVNDQNEVLVIQEKYTHSMQAHWKLPGGLAEPGEDLADTARREVLEETGVDAEFLSLLCFRHQHNFSFGCSDMYFVCHMKPKN---VDITICEQEVSKCQWMPFEEY 172          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: V4AS28_LOTGI (Nudix hydrolase domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AS28_LOTGI)

HSP 1 Score: 116 bits (291), Expect = 2.680e-29
Identity = 68/170 (40.00%), Postives = 103/170 (60.59%), Query Frame = 1
Query:    1 SGCVLNDE-REVLLVKDKRKNAT-WKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQ--FGNSDLYFICRLAPKEGGVTKITKCDHEIEDVCWMPLEQFQKETRHSMLAV-VADMLDKPEDKELTRWGPGHTHERVSLSERPVDSVLLGRAPYYLYHR 495
            SG V+N++  E+L+V+DK +  T WKFPGGL+D GE IG+ AERE+ EETG+++EF+S+LSMR QH++   FG SD Y ICR+ P      +I+ C  EI +  WM +E  ++E   S L + + DM++         +G     + V +    ++S+  G   + LYHR
Sbjct:   68 SGVVINEKTEEILVVQDKNRPYTLWKFPGGLSDLGEDIGKTAEREIFEETGIKSEFKSVLSMRQQHNLPGAFGRSDFYIICRMKPL---TFEISACVEEIRECKWMHIEDLKREIEVSSLTMRLTDMVE---------YGLREGWDVVDIGCEEMESIYKG-FKFKLYHR 224          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: UPI00142569A1 (nucleoside diphosphate-linked moiety X motif 6-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142569A1)

HSP 1 Score: 116 bits (291), Expect = 6.710e-29
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 SGCVLNDEREVLLVKDK-RKNATWKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQFGNSDLYFICRLAPKEGGVTKITKCDHEIEDVCWMPLEQF 321
            +G V+N+  +VL+VK++  K A WK PGG+ADPGE +G  A+REV EETG+EAEF S+L+ R QH  +FG SDLYF+C +       ++I  C HEI D  WM ++++
Sbjct:  103 AGFVVNENNQVLVVKERFYKKANWKLPGGMADPGEDLGVTAKREVFEETGIEAEFISLLAFRQQHGFRFGQSDLYFVCEMKALN---SEIASCQHEISDCMWMNVDEY 207          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: A0A6P4YAU5_BRABE (nudix hydrolase 8-like isoform X1 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YAU5_BRABE)

HSP 1 Score: 114 bits (284), Expect = 7.000e-28
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 SGCVLNDEREVLLVKDKRKN---ATWKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQFGNSDLYFICRLAPKEGGVT----KITKCDHEIEDVCWMPLEQF 321
            +G V+ND  EVL++++K  +   A WK PGGLA+PGE + + A REVLEETGV+AEF S+L  RHQH+  FG SD+YF+C + PK   +T    ++TKC        WMP+ +F
Sbjct:  105 AGFVVNDRNEVLVIQEKYTHSVKAHWKLPGGLAEPGEDLADTARREVLEETGVDAEFLSLLCFRHQHNFSFGCSDMYFVCHMKPKNLDITVGEQEVTKCQ-------WMPISEF 211          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: R0LF77_ANAPL (Nucleoside diphosphate-linked moiety X motif 6 (Fragment) n=2 Tax=Anas platyrhynchos TaxID=8839 RepID=R0LF77_ANAPL)

HSP 1 Score: 111 bits (278), Expect = 1.060e-27
Identity = 69/172 (40.12%), Postives = 100/172 (58.14%), Query Frame = 1
Query:    1 SGCVLNDER-EVLLVKDKRKNAT-WKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMR--HQHDMQFGNSDLYFICRLAPKEGGVTKITKCDHEIEDVCWMPLEQFQKETRHS--MLAVVADMLDKPEDKELTRWGPGHTHERVSLSERPVDSVLLGRAPYYLYHRK 498
            +G VL++    VL+V+D+ K    WKFPGGLA+PGE IG+ A REV EETG+++EF+S+LS+R  HQH   FG SD+Y ICRL P       I  C  E     WM L++  + T+H+  + + VA +L          +G     +++ ++ R   +V  GR  Y LYHR+
Sbjct:   35 AGAVLDENTGRVLVVQDRNKTVNAWKFPGGLANPGEDIGDTAVREVFEETGIKSEFKSILSIRQQHQHPGAFGKSDMYIICRLEPSS---FNINFCQQECLRCEWMDLDELAR-TKHATPITSNVAKLL---------LYGYREGFDKIDITMREFPAVYTGRF-YKLYHRE 192          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: UPI00065BF192 (nucleoside diphosphate-linked moiety X motif 6 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065BF192)

HSP 1 Score: 115 bits (288), Expect = 1.230e-27
Identity = 73/170 (42.94%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    1 SGCVLN-DEREVLLVKDK-RKNATWKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQ--FGNSDLYFICRLAPKEGGVTKITKCDHEIEDVCWMPLEQFQKETRH-SMLAVVADMLDKPEDKELTRWGPGHTHERVSLSERPVDSVLLGRAPYYLYHR 495
            SG V+  D  EVL+VKDK R ++ WKFPGGL+D GE I   AEREV EETGV AEF+S+L+ R QH +   FG SDLYF+CRL P       +  C  EI+   WM L Q ++E    SM   +AD++ K         G  H  + V +    + S+  G   + L+HR
Sbjct:  219 SGIVIKEDSGEVLVVKDKNRSHSLWKFPGGLSDLGEDIAVTAEREVFEETGVRAEFQSVLAFRQQHTLPGAFGRSDLYFLCRLRPL---TFDLHPCSEEIQACQWMTLTQLRQEVETTSMTLRLADVVQK---------GLTHGFQEVDIGATEMASIYRG-LKFNLFHR 375          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: R7V4Y1_CAPTE (Nudix hydrolase domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V4Y1_CAPTE)

HSP 1 Score: 113 bits (282), Expect = 1.300e-27
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 SGCVLNDEREVLLVKDK-RKNATWKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQFGNSDLYFICRLAPKEGGVTKITKCDHEIEDVCWMPLEQF 321
            +G V+ND+ EVL+V+++  + A WK PGGLAD GE IGEAAEREV EETG+   F+S+L  RHQH   FG SDLYFIC +  +    T+I  C +EI    WMP+ ++
Sbjct:  111 AGFVVNDKEEVLVVQERFARKAHWKLPGGLADAGEDIGEAAEREVREETGITCRFQSILCFRHQHQYNFGCSDLYFICLMKAES---TQIKVCPNEIAVAQWMPIHEY 215          
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Match: A0A1S3I2N1_LINUN (nudix hydrolase 8 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I2N1_LINUN)

HSP 1 Score: 113 bits (282), Expect = 1.600e-27
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 SGCVLNDEREVLLVKDK-RKNATWKFPGGLADPGEGIGEAAEREVLEETGVEAEFRSMLSMRHQHDMQFGNSDLYFICRLAPKEGGVTKITKCDHEIEDVCWMPLEQF 321
            +G V+N E+++L++++K      WK PGGLAD GE IGEAAEREV EETGV  +F+S++  RH H  + G  D YFIC + P      +ITKCD EI   CWM L+++
Sbjct:  108 AGFVVNSEKKLLVIQEKYHVQKMWKLPGGLADTGEDIGEAAEREVFEETGVRCKFQSIICFRHMHKFRHGLDDFYFICLMEPMS---KEITKCDREISACCWMDLDEY 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122326.1706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP8_ECTSI5.750e-7167.86Nudix (Nucleoside diphosphate linked moiety X)-typ... [more]
A0A836C878_9STRA4.820e-3944.25Nucleoside diphosphate linked moiety X-type motif ... [more]
C3ZV31_BRAFL7.730e-3150.00Nudix hydrolase domain-containing protein (Fragmen... [more]
V4AS28_LOTGI2.680e-2940.00Nudix hydrolase domain-containing protein (Fragmen... [more]
UPI00142569A16.710e-2949.07nucleoside diphosphate-linked moiety X motif 6-lik... [more]
A0A6P4YAU5_BRABE7.000e-2848.25nudix hydrolase 8-like isoform X1 n=3 Tax=Branchio... [more]
R0LF77_ANAPL1.060e-2740.12Nucleoside diphosphate-linked moiety X motif 6 (Fr... [more]
UPI00065BF1921.230e-2742.94nucleoside diphosphate-linked moiety X motif 6 n=1... [more]
R7V4Y1_CAPTE1.300e-2751.85Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A1S3I2N1_LINUN1.600e-2749.07nudix hydrolase 8 n=2 Tax=Lingula unguis TaxID=757... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122326contigH-elongata_contig122326:356..1164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue2.7e-56
Seed eggNOG ortholog2880.D8LBP8
Preferred nameNUDT6
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0008083,GO:0008150,GO:0009966,GO:0010469,GO:0010646,GO:0023051,GO:0030545,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.8-hydroxy-dADP phosphatase activity
EggNOG OGsKOG0648@1,KOG0648@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-27_003180.1
Exons2
Model size504
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.9100277-CDS-H-elongata_contig122326:355..8081622929719.9100277-CDS-H-elongata_contig122326:355..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122326 356..808 +
1691679131.749896-CDS-H-elongata_contig122326:355..8081691679131.749896-CDS-H-elongata_contig122326:355..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122326 356..808 +
1622929719.9378269-CDS-H-elongata_contig122326:1113..11641622929719.9378269-CDS-H-elongata_contig122326:1113..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122326 1114..1164 +
1691679131.7639942-CDS-H-elongata_contig122326:1113..11641691679131.7639942-CDS-H-elongata_contig122326:1113..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122326 1114..1164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122326.1706.1prot_H-elongata_contig122326.1706.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122326 356..1164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122326.1706.1

>prot_H-elongata_contig122326.1706.1 ID=prot_H-elongata_contig122326.1706.1|Name=mRNA_H-elongata_contig122326.1706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
SGCVLNDEREVLLVKDKRKNATWKFPGGLADPGEGIGEAAEREVLEETGV
EAEFRSMLSMRHQHDMQFGNSDLYFICRLAPKEGGVTKITKCDHEIEDVC
WMPLEQFQKETRHSMLAVVADMLDKPEDKELTRWGPGHTHERVSLSERPV
DSVLLGRAPYYLYHRKT*
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mRNA from alignment at H-elongata_contig122326:356..1164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122326.1706.1 ID=mRNA_H-elongata_contig122326.1706.1|Name=mRNA_H-elongata_contig122326.1706.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=809bp|location=Sequence derived from alignment at H-elongata_contig122326:356..1164+ (Himanthalia elongata Himel1 dioecious)
TCAGGCTGTGTTTTAAACGACGAACGAGAGGTGTTGCTGGTGAAGGATAA GCGCAAAAACGCCACGTGGAAGTTCCCAGGGGGTCTAGCAGATCCAGGCG AAGGGATCGGAGAGGCGGCAGAGCGAGAGGTTTTGGAGGAGACGGGGGTG GAGGCCGAGTTCCGGTCGATGCTGAGCATGCGACACCAGCACGACATGCA GTTCGGAAATAGTGACCTATACTTCATCTGCCGGCTAGCGCCCAAGGAAG GCGGGGTAACGAAAATTACCAAGTGCGACCACGAGATCGAAGATGTTTGC TGGATGCCTCTGGAGCAGTTCCAGAAAGAGACGCGGCATTCCATGCTCGC CGTTGTCGCTGACATGCTCGACAAGCCCGAGGACAAGGAATTGACGAGGT GGGGACCAGGTCACACCCACGAGAGAGTATCTCTCTCGGAGCGTCCGGTA GATGTATATCTTGCTCCAGAGAAGGCAAAGGACATTGGTGTATTCAGAAA CAACGGTGCCTCGTAATCCACGACCCCCAGGGCGTTAGTAAGTGAAGGTG CTCCTCGCCTTCCCCGCCACGATGTTACTTCTGAATCAGGTCGTTAGAGG CAGTATATTTTGCTCTGGTTTTTGAGCAATGATACTGGGTGGGCAGAGCG ACACCATCAGGATGTCCGTGTGCGCGTCGCATCGTTTCGCTATCATCACG GGTAATAATTCGCATGTTTCCTACTGCCGCATACATCTCTATCAGGAGCC TCCACGAGTCGGTGCTTCTCGGTCGGGCGCCCTACTATCTCTATCATCGC AAAACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig122326:356..1164+

>mRNA_H-elongata_contig122326.1706.1 ID=mRNA_H-elongata_contig122326.1706.1|Name=mRNA_H-elongata_contig122326.1706.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig122326:356..1164+ (Himanthalia elongata Himel1 dioecious)
TCAGGCTGTGTTTTAAACGACGAACGAGAGGTGTTGCTGGTGAAGGATAA
GCGCAAAAACGCCACGTGGAAGTTCCCAGGGGGTCTAGCAGATCCAGGCG
AAGGGATCGGAGAGGCGGCAGAGCGAGAGGTTTTGGAGGAGACGGGGGTG
GAGGCCGAGTTCCGGTCGATGCTGAGCATGCGACACCAGCACGACATGCA
GTTCGGAAATAGTGACCTATACTTCATCTGCCGGCTAGCGCCCAAGGAAG
GCGGGGTAACGAAAATTACCAAGTGCGACCACGAGATCGAAGATGTTTGC
TGGATGCCTCTGGAGCAGTTCCAGAAAGAGACGCGGCATTCCATGCTCGC
CGTTGTCGCTGACATGCTCGACAAGCCCGAGGACAAGGAATTGACGAGGT
GGGGACCAGGTCACACCCACGAGAGAGTATCTCTCTCGGAGCGTCCGGTA
GATTCAGGCTGTGTTTTAAACGACGAACGAGAGGTGTTGCTGGTGAAGGA
TAAGCGCAAAAACGCCACGTGGAAGTTCCCAGGGGGTCTAGCAGATCCAG
GCGAAGGGATCGGAGAGGCGGCAGAGCGAGAGGTTTTGGAGGAGACGGGG
GTGGAGGCCGAGTTCCGGTCGATGCTGAGCATGCGACACCAGCACGACAT
GCAGTTCGGAAATAGTGACCTATACTTCATCTGCCGGCTAGCGCCCAAGG
AAGGCGGGGTAACGAAAATTACCAAGTGCGACCACGAGATCGAAGATGTT
TGCTGGATGCCTCTGGAGCAGTTCCAGAAAGAGACGCGGCATTCCATGCT
CGCCGTTGTCGCTGACATGCTCGACAAGCCCGAGGACAAGGAATTGACGA
GGTGGGGACCAGGTCACACCCACGAGAGAGTATCTCTCTCGGAGCGTCCG
GTAGATTCGGTGCTTCTCGGTCGGGCGCCCTACTATCTCTATCATCGCAA
AACGTGATCGGTGCTTCTCGGTCGGGCGCCCTACTATCTCTATCATCGCA
AAACGTGA
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