mRNA_H-elongata_contig12231.1703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12231.1703.1
Unique NamemRNA_H-elongata_contig12231.1703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12231.1703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12231contigH-elongata_contig12231:3161..5428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12231.1703.1prot_H-elongata_contig12231.1703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12231 3184..5428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.763186-UTR-H-elongata_contig12231:3160..31831622929719.763186-UTR-H-elongata_contig12231:3160..3183Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12231 3161..3183 +
1691679131.6711183-UTR-H-elongata_contig12231:3160..31831691679131.6711183-UTR-H-elongata_contig12231:3160..3183Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12231 3161..3183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.7741044-CDS-H-elongata_contig12231:3183..32071622929719.7741044-CDS-H-elongata_contig12231:3183..3207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12231 3184..3207 +
1691679131.684037-CDS-H-elongata_contig12231:3183..32071691679131.684037-CDS-H-elongata_contig12231:3183..3207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12231 3184..3207 +
1622929719.784705-CDS-H-elongata_contig12231:5209..54281622929719.784705-CDS-H-elongata_contig12231:5209..5428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12231 5210..5428 +
1691679131.700547-CDS-H-elongata_contig12231:5209..54281691679131.700547-CDS-H-elongata_contig12231:5209..5428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12231 5210..5428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12231.1703.1

>prot_H-elongata_contig12231.1703.1 ID=prot_H-elongata_contig12231.1703.1|Name=mRNA_H-elongata_contig12231.1703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MRLLPDEEERQTWRRMLSSVFSSFERGPRSPMVRRGRWLDTRSNGHSCWS
GSWLDTVSWPQRGGTALIHFVRACALLDRP*
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mRNA from alignment at H-elongata_contig12231:3161..5428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12231.1703.1 ID=mRNA_H-elongata_contig12231.1703.1|Name=mRNA_H-elongata_contig12231.1703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2268bp|location=Sequence derived from alignment at H-elongata_contig12231:3161..5428+ (Himanthalia elongata Himel1 dioecious)
TTCGGCGCCCACCCTACTCACCGATGCGATTGCTTCCAGACGAAGAGGTG
TGAGGTCTGAGAGAGCCTCGTCTTAACAACAGGTTATGATGATTTTTTCA
GAGTCGCGAAATGAAGCCCTCTTCGGGAAACGTTAGCCTCCACATCCACC
TTTACCTTGACCCTTCCCTTCCATTCGGCCTGCTGTCTAAAGCCACACAT
TGATGTACTAGACGAGTACGTCCTACTACCTTCATGAGCCACGCGGGACC
CCAGGCCAGTATTGGAATATATTCCATTTTGCCCATCATACTCGATAGCA
CTCGTCGCCGAAGCAGTATAGCTAGCGGCCACAGGAAAAGCAATAGGGAG
TTCCATTCTACTAGACATGTCTTCTTGTTCTTGTAGCGGAACGCATGGGA
ACGGGGGGTAGAGTGCAACGTTCAACCATTGGTTAACGGGATGCAGGGGT
GCCGAACTTGTTTCGCGATAAAAAAGACTTCGTTGGCGTGAGGCGGGATG
GGTTAGGTCGGCAGCTTTTCAGGCCGTCAATTACAAGGCCTTACATGGGA
CAGATTTGTCAGATGCCGCCATAGCGGTACGATACGGGAGTGCCTTGTGA
ACATTTAAGGGTATACGGTATGGGAACTCGACTGCGCGGAAACGCGTCGT
AAGGTACTCTCACCCGCCACGGTAACATAATCATACGGTACGGCGTACGA
TACGTAATTATGTTAACAGTGCAGGAATCATTACGTAGGGTAACCTCATA
TCGTGGTAAATTAAACATCGATGCCGCCCAGCGATGTGCCCATAGCTTTC
GGCCTGTTGCATAATCATGGAGGGAGTTTTTCCGAACAATTCGGTACCTG
GCATGATACTTGGCCAAGTTCATCTGCATTCAATTTTGATTTTTTTTAAT
ATATATATATATAGTTCAAAATATATTGTGATTTGAGTTTGGATTCTGCC
ATCCCAATACCCCGGTACCACGAACGTTCTCACCCCAATACCCCGGTACC
GTACGCTCACCGTCTTCGCATAAAACAATAATTCCTTTTTATATCTCTCG
TTTTTCCCCCTTTCTTTGGCATTATTCTGATTTCGCCGTGGTCCATTCGA
ATGCCGATCCGCTATATAATGCCGACATACCAAAGACGGAAATACCACAG
TCTACAGAACATATCATCATATAGATGATTGTTTAATTACTCACAGTACA
GCTCGATACCGACCACTCGGCCAGTCGTTGCCTCATTCTTAGCCACAGCG
GTGTCCTTGCTATATTAGTCCCGCGACGCTTTTCTTCGTCTCGAGATCGA
CCTGGTTCTACGGCTTAACTATAACCTCTGGGATGCACCTTTCGCTGAGC
CTCACAAGCATCATCATCTGCTTGACTTTAAAAGCACCCGTGCTCGGCCG
CATGTTTATCGATGAGCAGCAAGAGGACATTAAAAGCTGTGCTCCCCCTG
GTAGCTGGTAGCGTCGATTCAATTATGAAGGGTGCGCTAAGAGCGTAGTC
TGCCATAGCTGGTGCCGCAGCAATCTCACCTATGAGGAGGAGCGACTGCG
TCAAATCTCTTCAACCAAACCCCGCCAGAGATAATCGTCCGACGTCCGGT
TCCACCCCCCCCTCTAAGGCATTTCGCCAACTCATGACCCACGTGTGACA
CGGGTAATCTCTAGTCCTCTAATCACCCCGGAAGCCGTAGCACACGCGGT
CTCTTTGTCGCGTGGGTTGAAGCACCACCGTGACCTGGAACTAGAGTGGA
GGAAGGGACAGGGGCTAGAGAAGAGGCTCGAGCAGGAGATGATGCCTCCG
AAGGAAGAGTAGCTTTATCGTCAAGCCCGGGGGAAAAGCTAGCCAAAGTT
GTGATGTCATTAATCCCCCACATGACTAAATCAAGTATCTGGTGCCATCG
TTCGAGACCCATTTCAATAAGCGGCCGCATACTTTCAGCGCCCCACATTT
AAACAACTTTACACACCGCACGTTGCTGCAGTGGATGGATGTCGAAAACT
CCTCGATCACTGGCCACACTAATGACATATTCGCCATGGTTGCCGGTAGG
AGCGGCAAACATGGCGACGGATGCTGTCGAGCGTGTTCTCAAGTTTCGAA
CGAGGACCTCGTTCACCGATGGTGCGCCGCGGGCGCTGGCTCGACACCCG
TAGCAACGGTCACAGCTGCTGGTCTGGAAGCTGGCTCGACACCGTCAGCT
GGCCGCAGCGAGGAGGAACCGCTCTCATTCATTTTGTACGAGCATGTGCG
CTCCTAGACCGCCCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig12231:3161..5428+

>mRNA_H-elongata_contig12231.1703.1 ID=mRNA_H-elongata_contig12231.1703.1|Name=mRNA_H-elongata_contig12231.1703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig12231:3161..5428+ (Himanthalia elongata Himel1 dioecious)
ATGCGATTGCTTCCAGACGAAGAGATGCGATTGCTTCCAGACGAAGAGGA
GCGGCAAACATGGCGACGGATGCTGTCGAGCGTGTTCTCAAGTTTCGAAC
GAGGACCTCGTTCACCGATGGTGCGCCGCGGGCGCTGGCTCGACACCCGT
AGCAACGGTCACAGCTGCTGGTCTGGAAGCTGGCTCGACACCGTCAGCTG
GCCGCAGCGAGGAGGAACCGCTCTCATTCATTTTGTACGAGCATGTGCGC
TCCTAGACCGCCCCTAAGAGCGGCAAACATGGCGACGGATGCTGTCGAGC
GTGTTCTCAAGTTTCGAACGAGGACCTCGTTCACCGATGGTGCGCCGCGG
GCGCTGGCTCGACACCCGTAGCAACGGTCACAGCTGCTGGTCTGGAAGCT
GGCTCGACACCGTCAGCTGGCCGCAGCGAGGAGGAACCGCTCTCATTCAT
TTTGTACGAGCATGTGCGCTCCTAGACCGCCCCTAA
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