mRNA_H-elongata_contig122209.1700.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122209.1700.1
Unique NamemRNA_H-elongata_contig122209.1700.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122209.1700.1 vs. uniprot
Match: A0A6H5KRN1_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN1_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.250e-26
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 AYRVLYVSVCAVAFVNAMTYSVLGPFLPAYVSERFGSASTEVGMIMAAYPAMNLVTSPLVGLLVTR 198
            AYR+LYVS C+VAFVNAMT+SVLGPFLPAY+++RFG  ST+VGMIMAAYPA+NL  SPLVG ++ R
Sbjct:   24 AYRLLYVSACSVAFVNAMTFSVLGPFLPAYIADRFGRTSTQVGMIMAAYPAVNLAASPLVGWVMNR 89
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BLAST of mRNA_H-elongata_contig122209.1700.1 vs. uniprot
Match: D7G1X7_ECTSI (Major facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X7_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.910e-15
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   52 MTYSVLGPFLPAYVSERFGSASTEVGMIMAAYPAMNLVTSPLVGLLVTR 198
            MT+SVLGPFLPAY+++RFGS ST+VGMIMAAYPA+NL  SPLVG ++ R
Sbjct:    1 MTFSVLGPFLPAYIADRFGSTSTQVGMIMAAYPAVNLAASPLVGWVMYR 49
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BLAST of mRNA_H-elongata_contig122209.1700.1 vs. uniprot
Match: A0A836CL52_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL52_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.340e-9
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   61 SVLGPFLPAYVSERFGSASTEVGMIMAAYPAMNLVTSPLVGLLVTR 198
            SVLGPFLP Y   RFGS+  +VG+IMA YPA NL+ SP VG +  R
Sbjct:  551 SVLGPFLPNYAERRFGSSPAQVGIIMAVYPAFNLLASPWVGYVANR 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122209.1700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRN1_9PHAE1.250e-2674.24MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1X7_ECTSI1.910e-1573.47Major facilitator superfamily permease n=1 Tax=Ect... [more]
A0A836CL52_9STRA3.340e-960.87Major facilitator superfamily domain-containing pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122209contigH-elongata_contig122209:1047..1620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.5212696-CDS-H-elongata_contig122209:1046..11241622929719.5212696-CDS-H-elongata_contig122209:1046..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122209 1047..1124 -
1691679131.584876-CDS-H-elongata_contig122209:1046..11241691679131.584876-CDS-H-elongata_contig122209:1046..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122209 1047..1124 -
1622929719.5387487-CDS-H-elongata_contig122209:1497..16201622929719.5387487-CDS-H-elongata_contig122209:1497..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122209 1498..1620 -
1691679131.5995076-CDS-H-elongata_contig122209:1497..16201691679131.5995076-CDS-H-elongata_contig122209:1497..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122209 1498..1620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122209.1700.1prot_H-elongata_contig122209.1700.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122209 1047..1620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122209.1700.1

>prot_H-elongata_contig122209.1700.1 ID=prot_H-elongata_contig122209.1700.1|Name=mRNA_H-elongata_contig122209.1700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
AYRVLYVSVCAVAFVNAMTYSVLGPFLPAYVSERFGSASTEVGMIMAAYP
AMNLVTSPLVGLLVTR*
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mRNA from alignment at H-elongata_contig122209:1047..1620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122209.1700.1 ID=mRNA_H-elongata_contig122209.1700.1|Name=mRNA_H-elongata_contig122209.1700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=574bp|location=Sequence derived from alignment at H-elongata_contig122209:1047..1620- (Himanthalia elongata Himel1 dioecious)
GCTTACCGTGTCCTGTACGTCAGCGTTTGCGCGGTGGCTTTCGTGAACGC
CATGACCTATTCCGTCCTAGGACCCTTCTTGCCTGCCTACGTCTCGGAAA
GATTCGGGAGCGCGTCCACGGAGGTATATTAATCTCAACCTGGTACGATG
TGCTTCACAGTAGCCAAGTCAAGTCCCGGAGATTTGAAGGCTACATTCGC
GCACATCCCGCTGTGCGTAAGTGTGTGCGCGTACGTTTGTACAAATGCGA
ACGCTTCCTTGTTGGAATAAGCATTCCACGGTGGACGTCAACCCCCCCCC
CCCCCCCCCTCCCCGCAATCCCTTTTCCCTAGGCCCCCCCCCCGCCCCCC
CCCCCCCTCCATCTCTCCCTGTAATCCTTTCTCCGTAGCCTCCCCCGCCG
CTGCCCTGCCCCCCCCCCCCCCTTGCCTCACGTTACTGCCCTTGCTTCGT
GTACCGATGCCCTGTCGTGATCGCTGACGGCGGCGCACGAGAACAGGTGG
GGATGATAATGGCCGCATATCCAGCGATGAACCTCGTAACTTCGCCCCTC
GTGGGCCTTCTCGTCACCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig122209:1047..1620-

>mRNA_H-elongata_contig122209.1700.1 ID=mRNA_H-elongata_contig122209.1700.1|Name=mRNA_H-elongata_contig122209.1700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig122209:1047..1620- (Himanthalia elongata Himel1 dioecious)
GCTTACCGTGTCCTGTACGTCAGCGTTTGCGCGGTGGCTTTCGTGAACGC
CATGACCTATTCCGTCCTAGGACCCTTCTTGCCTGCCTACGTCTCGGAAA
GATTCGGGAGCGCGTCCACGGAGGCTTACCGTGTCCTGTACGTCAGCGTT
TGCGCGGTGGCTTTCGTGAACGCCATGACCTATTCCGTCCTAGGACCCTT
CTTGCCTGCCTACGTCTCGGAAAGATTCGGGAGCGCGTCCACGGAGGTGG
GGATGATAATGGCCGCATATCCAGCGATGAACCTCGTAACTTCGCCCCTC
GTGGGCCTTCTCGTCACCAGGTGAGTGGGGATGATAATGGCCGCATATCC
AGCGATGAACCTCGTAACTTCGCCCCTCGTGGGCCTTCTCGTCACCAGGT
GA
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