mRNA_H-elongata_contig122083.1688.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122083.1688.1
Unique NamemRNA_H-elongata_contig122083.1688.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: D7FNX4_ECTSI (Putative anion:sodium symporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNX4_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.180e-103
Identity = 170/198 (85.86%), Postives = 184/198 (92.93%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVA---PTIISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPVRAPTFDRKVKERFEKV 585
            SVMMTTITTLGAIVMTPLLCK++LGTVVPVDA+GIA ST+QVVLAPI+VGMMTNKFFP  V AVLPVTPVVGVLSTCFLVASAVA   PTIIS+G+ALQIPI+LLHL+GGLIGY LP+ MGFSEVS+RTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSM+AI+WRYIPV  P FDR VK RFEK+
Sbjct:  188 SVMMTTITTLGAIVMTPLLCKLLLGTVVPVDAVGIAFSTVQVVLAPIVVGMMTNKFFPSVVKAVLPVTPVVGVLSTCFLVASAVAQVAPTIISAGLALQIPIILLHLLGGLIGYFLPKAMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMMAIIWRYIPVETPKFDRGVKGRFEKI 385
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: A0A836CI93_9STRA (Putative anion:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI93_9STRA)

HSP 1 Score: 308 bits (789), Expect = 1.260e-102
Identity = 167/198 (84.34%), Postives = 184/198 (92.93%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVA---PTIISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPVRAPTFDRKVKERFEKV 585
            SVMMTTITTLGAIVMTPLLCK++LG VVPVDA+GIA ST++VVLAPI VGM TNK+FPK V AVLP+TPVVGVLSTCFLVASAVA   PTIIS+GIALQIPI+LLHL+GGL+GY +PR +GFSEVS+RTMAIETSMKSSAFGFLLAKLHFGSFEARVPAA+SVVWMAITGS+LAIVWRYIPV+AP FDR VK RFEKV
Sbjct:  129 SVMMTTITTLGAIVMTPLLCKLLLGAVVPVDALGIARSTVEVVLAPIAVGMATNKYFPKLVKAVLPITPVVGVLSTCFLVASAVAQVAPTIISAGIALQIPIILLHLVGGLLGYLVPRKLGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAVSVVWMAITGSLLAIVWRYIPVKAPKFDRGVKARFEKV 326
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: A0A7S1XKP9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKP9_9STRA)

HSP 1 Score: 261 bits (667), Expect = 3.910e-83
Identity = 137/195 (70.26%), Postives = 167/195 (85.64%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVA---PTIISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPVRAPTFDRKVKERF 576
            SV+MTT+TT GAIV TPLLCK++LG VVPV+A+GIAVSTIQVVLAPI +GM  NKFFPKAV +VLP+TPV+G  STC LVA++VA   P I+++G+ LQ P++LLHL+GGLIGY+LPR +GFSE S+RTMAIET+MKSSAFGFLLAKLHF  F  RVP+A+SVVWMAITGS LA+ WRY+PV   TFDRK+ E++
Sbjct:  211 SVLMTTVTTFGAIVFTPLLCKVLLGAVVPVNAVGIAVSTIQVVLAPIFLGMTLNKFFPKAVKSVLPLTPVIGTFSTCLLVAASVAQCAPDIMNAGLKLQFPVLLLHLVGGLIGYSLPRKLGFSETSSRTMAIETAMKSSAFGFLLAKLHFVDFAVRVPSAVSVVWMAITGSALAVFWRYMPVPRATFDRKLPEKY 405
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: A0A7S1D1B0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1B0_CYCTE)

HSP 1 Score: 255 bits (652), Expect = 1.630e-82
Identity = 134/183 (73.22%), Postives = 160/183 (87.43%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVAPT---IISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPVR 540
            SV+MTT TT+GAI MTPLLCK +LGTVVPVDA+GIA+ST+QVVLAPI +GM TNKFFP  V  VLP  PVVGV+STC LVASAVA     I+ +G++LQIP++LLHL+GGL+GY LPR  GF+EVS+RTMAIETSMKSSAFGFLLAKLHFG + ARVP+A+SVVWMA+TGS+LA++WRYIPV+
Sbjct:  104 SVLMTTATTIGAIFMTPLLCKALLGTVVPVDAVGIAMSTLQVVLAPIAIGMTTNKFFPGFVKTVLPFAPVVGVVSTCLLVASAVAQVAAPILDAGVSLQIPVLLLHLVGGLVGYFLPRLTGFNEVSSRTMAIETSMKSSAFGFLLAKLHFGEYAARVPSAVSVVWMALTGSILAVIWRYIPVK 286
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: A0A1E7FNI1_9STRA (BASS family transporter: sodium ion/bile acid n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNI1_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.620e-81
Identity = 134/183 (73.22%), Postives = 155/183 (84.70%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVAPT---IISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPVR 540
            SV+MTT TT+GAI MTPL+CK +LGTVVPVDA GIA STIQVVL PI VGM TNKFFP  V  +LP+TPV+GVLSTC LVASAVA     I+++G+ LQ PI LLHLIGGL+GY LP+  GF EV +RTMAIETSMKSSAFGFLLAKLHFG + ARVP+A+SVVWMA+TGSMLA++WRYIPV+
Sbjct:   81 SVLMTTATTVGAIFMTPLICKGLLGTVVPVDAAGIAFSTIQVVLGPIAVGMATNKFFPNFVKKILPITPVIGVLSTCMLVASAVAQVTEPILNAGLQLQAPIFLLHLIGGLVGYGLPKLTGFGEVKSRTMAIETSMKSSAFGFLLAKLHFGQYAARVPSAVSVVWMALTGSMLAVIWRYIPVK 263
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: A0A7S1E294_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E294_9STRA)

HSP 1 Score: 252 bits (644), Expect = 3.880e-81
Identity = 132/182 (72.53%), Postives = 160/182 (87.91%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVAPT---IISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPV 537
            SV+MTT TT+GAI MTPLLCK +LGTVVPVDA+GIA ST+QVVLAPI +GM  N+FFPK V A+LP+TPVVGVLSTC LVASAVA     I+++G+ LQ+P++LLH++GGL+GY LP+  GF EV++RTMAIETSMKSSAFGFLLAKLHFG + ARVP+A+SVVWMA+TGSMLA+VWRYIP+
Sbjct:  116 SVLMTTATTVGAIFMTPLLCKAVLGTVVPVDAVGIAKSTLQVVLAPIALGMTANQFFPKFVKAILPITPVVGVLSTCMLVASAVAQVSEPIMNAGLTLQLPLLLLHVVGGLVGYFLPKATGFDEVTSRTMAIETSMKSSAFGFLLAKLHFGEYAARVPSAVSVVWMALTGSMLAVVWRYIPI 297
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: A0A448ZNR0_9STRA (Uncharacterized protein n=3 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZNR0_9STRA)

HSP 1 Score: 254 bits (650), Expect = 7.810e-81
Identity = 135/182 (74.18%), Postives = 158/182 (86.81%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVAPT---IISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPV 537
            SV+MTT TTLGAI MTPL+CK +LGTVVPVDA+GIA+STIQVVLAPI +GM TNKFFP  V  +LP+TPVVGVLSTC LVASAVA     I+++G+ LQ P+ LLHL+GGL+GY LP+  GFSEV +RTMAIETSMKSSAFGFLLAKLHFG + ARVP+A+SVVWMA+TGS+LA+VWRYIPV
Sbjct:  209 SVLMTTATTLGAIFMTPLICKAVLGTVVPVDAVGIAMSTIQVVLAPIAIGMTTNKFFPNFVKXILPITPVVGVLSTCLLVASAVAQVSEPIMNAGLQLQTPVFLLHLLGGLVGYFLPKLTGFSEVKSRTMAIETSMKSSAFGFLLAKLHFGQYAARVPSAVSVVWMALTGSLLAVVWRYIPV 390
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: A0A7S2RGT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RGT9_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.640e-80
Identity = 133/190 (70.00%), Postives = 158/190 (83.16%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVAPT---IISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPVRAPT-FDR 558
            SV+MTT TT+GAI MTP LCK+ LG VVPVDA GIA+ST+QVVLAPI +GM    FFPK V+ +LP  PVVGV+STC LVASAVA     I+S+G++LQ+P +LLHLIGGL+GYALP+  GF EV+ RTMAIETSMKSSAFGFLLAKLHFG + ARVPAA+SVVWMA+TGS+LA++WRY+PV  P  FDR
Sbjct:    7 SVLMTTATTVGAIFMTPFLCKLALGAVVPVDATGIAISTLQVVLAPIALGMSFKSFFPKFVDKILPFAPVVGVVSTCLLVASAVAQVADPIMSAGLSLQLPCLLLHLIGGLVGYALPKMSGFGEVACRTMAIETSMKSSAFGFLLAKLHFGEYAARVPAAVSVVWMALTGSILAVIWRYVPVEPPKKFDR 196
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BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: A0A7S1FU32_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU32_9STRA)

HSP 1 Score: 254 bits (650), Expect = 1.950e-80
Identity = 137/196 (69.90%), Postives = 165/196 (84.18%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVAPT---IISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPVRAP-TFDRKVKERF 576
            SV+MTT TTLGAI MTPLLCK +LG +VPVDA+GIA+STIQVVLAPI VGM  NK FPK V A+LP  PVVGV+STC LVASAVA     I ++G++LQIP++LLHL+GGL+G+ LP+ +GF EV+ RTMAIETSMKSSAFGFLLAKLHFG + ARVP+A+SVVWMA+TGSMLA++WRYIPV  P  FDR + E++
Sbjct:  213 SVLMTTATTLGAIFMTPLLCKTLLGAIVPVDAVGIAMSTIQVVLAPIAVGMFLNKNFPKVVKAILPFAPVVGVVSTCLLVASAVAQVAEPIRNAGMSLQIPVLLLHLLGGLVGFILPKLLGFGEVACRTMAIETSMKSSAFGFLLAKLHFGQYAARVPSAVSVVWMALTGSMLAVIWRYIPVPQPKVFDRSLLEKY 408
[Close]
BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Match: B8CAH3_THAPS (Sodium dependent bile acid symporter n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAH3_THAPS)

HSP 1 Score: 249 bits (635), Expect = 2.950e-80
Identity = 133/182 (73.08%), Postives = 156/182 (85.71%), Query Frame = 1 
Query:    1 SVMMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMMTNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVAPT---IISSGIALQIPIVLLHLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMLAIVWRYIPV 537
            SV+MTT TT+GAI+MTP LCK MLG VVPVDA GIA+STIQVVLAPI +GM  NKFFPK V A+LP  PVVGV+STC LVASAVA     I+++GI LQIP++LLHL+GG++GY LP+  GF EV +RTMAIETSMKSSAFGFLLAKLHFG + ARVP+A+SVVWMA+TGS+LA+VWRYIPV
Sbjct:   81 SVLMTTATTVGAILMTPFLCKSMLGAVVPVDARGIAMSTIQVVLAPIAIGMTANKFFPKIVKAILPFAPVVGVVSTCLLVASAVAQVSEPILNAGIGLQIPVLLLHLLGGIVGYWLPKLTGFGEVKSRTMAIETSMKSSAFGFLLAKLHFGDYIARVPSAVSVVWMALTGSLLAVVWRYIPV 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122083.1688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNX4_ECTSI1.180e-10385.86Putative anion:sodium symporter n=2 Tax=Ectocarpus... [more]
A0A836CI93_9STRA1.260e-10284.34Putative anion:sodium symporter n=1 Tax=Tribonema ... [more]
A0A7S1XKP9_9STRA3.910e-8370.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1D1B0_CYCTE1.630e-8273.22Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1E7FNI1_9STRA3.620e-8173.22BASS family transporter: sodium ion/bile acid n=1 ... [more]
A0A7S1E294_9STRA3.880e-8172.53Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A448ZNR0_9STRA7.810e-8174.18Uncharacterized protein n=3 Tax=Pseudo-nitzschia T... [more]
A0A7S2RGT9_9STRA1.640e-8070.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1FU32_9STRA1.950e-8069.90Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
B8CAH3_THAPS2.950e-8073.08Sodium dependent bile acid symporter n=1 Tax=Thala... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122083contigH-elongata_contig122083:95..1973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.6
Seed ortholog evalue2.6e-82
Seed eggNOG ortholog2880.D7FNX4
Preferred nameBASS2
KEGG koko:K03453
KEGG TC2.A.28
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006848,GO:0006849,GO:0008028,GO:0008150,GO:0008509,GO:0008514,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0015075,GO:0015318,GO:0015711,GO:0015718,GO:0015849,GO:0022857,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050833,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0098656,GO:1901475,GO:1903825,GO:1905039
EggNOG free text desc.bile acid:sodium symporter activity
EggNOG OGsCOG0385@1,KOG2718@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionputative anion:sodium symporter
Ec32 orthologEc-10_004650.1
Exons4
Model size603
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122083.1688.1prot_H-elongata_contig122083.1688.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122083 95..1967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.53727-CDS-H-elongata_contig122083:94..3611622929718.53727-CDS-H-elongata_contig122083:94..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122083 95..361 -
1691679131.10964-CDS-H-elongata_contig122083:94..3611691679131.10964-CDS-H-elongata_contig122083:94..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122083 95..361 -
1622929718.5480127-CDS-H-elongata_contig122083:910..9971622929718.5480127-CDS-H-elongata_contig122083:910..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122083 911..997 -
1691679131.1225007-CDS-H-elongata_contig122083:910..9971691679131.1225007-CDS-H-elongata_contig122083:910..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122083 911..997 -
1622929718.5593164-CDS-H-elongata_contig122083:1239..13651622929718.5593164-CDS-H-elongata_contig122083:1239..1365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122083 1240..1365 -
1691679131.13223-CDS-H-elongata_contig122083:1239..13651691679131.13223-CDS-H-elongata_contig122083:1239..1365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122083 1240..1365 -
1622929718.5739555-CDS-H-elongata_contig122083:1850..19671622929718.5739555-CDS-H-elongata_contig122083:1850..1967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122083 1851..1967 -
1691679131.1403313-CDS-H-elongata_contig122083:1850..19671691679131.1403313-CDS-H-elongata_contig122083:1850..1967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122083 1851..1967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.5880618-UTR-H-elongata_contig122083:1967..19731622929718.5880618-UTR-H-elongata_contig122083:1967..1973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122083 1968..1973 -
1691679131.1483555-UTR-H-elongata_contig122083:1967..19731691679131.1483555-UTR-H-elongata_contig122083:1967..1973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122083 1968..1973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122083.1688.1

>prot_H-elongata_contig122083.1688.1 ID=prot_H-elongata_contig122083.1688.1|Name=mRNA_H-elongata_contig122083.1688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MMTTITTLGAIVMTPLLCKIMLGTVVPVDAIGIAVSTIQVVLAPILVGMM
TNKFFPKAVNAVLPVTPVVGVLSTCFLVASAVAPTIISSGIALQIPIVLL
HLIGGLIGYALPRYMGFSEVSARTMAIETSMKSSAFGFLLAKLHFGSFEA
RVPAAISVVWMAITGSMLAIVWRYIPVRAPTFDRKVKERFEKVREKSK*
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mRNA from alignment at H-elongata_contig122083:95..1973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122083.1688.1 ID=mRNA_H-elongata_contig122083.1688.1|Name=mRNA_H-elongata_contig122083.1688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1879bp|location=Sequence derived from alignment at H-elongata_contig122083:95..1973- (Himanthalia elongata Himel1 dioecious)
TCGGTGATGATGACCACCATTACCACTCTTGGGGCGATCGTCATGACCCC
GCTGCTGTGCAAGATCATGCTCGGAACCGTGGTACCCGTCGACGCTATTG
GCATCGCCGTGTCCACCATCCAGGTAAAAAAAATAAATAAATCCCGCTAC
CGCTCTTTTTGTTTTCCTCCGTCAATTACGCCTTTGACTCTACAGAGGGT
GTTGTAAAGATATAGGCTTGCGTCGAATTTCGTGCCGCTAAGAGCCATAT
CGAAAACAATGCTGCAAGTATCCTGTCCAGCTCTATTTTCTTGCGTTTAG
GTTTACGCTTTCATCTCTGTTTCGTTGATTTAAGAAATCTAGGGGTGACC
CCGCCCTGGCCGGGTCGGGCCGCTCCTTTAGTAAGGTACAGGAGACCTCC
AACAGCGACGTGAAACGGGTTCCGTTCGGTAGGCGACATAGCTCCAGATC
CCTTGCACCTAAATTCCGACCATCTCCTTTGTCGGCTGCCAGGATTTCAG
GAGACGGAAGTGTCACGTTTTGCAGCCAAATGAAGCAAGGAGCTCTTACT
GTATTAACTGCATGATATGATGGGGTCTCAACGATACCGCCGTTTGCTCG
AATGGCAGGTGGTGCTCGCGCCCATCTTGGTAGGCATGATGACCAACAAG
TTCTTCCCCAAAGCCGTTAACGCTGTGCTCCCCGTGACCCCAGTGGTGGG
CGTGCTGTCCACGTGCTTCTTGGTCGCCTCGGCCGTCGCGCAGGCAAGCT
TTTCGTTTCCATTGTAGCAGGGGCTGGAGATGAGTATGAGACGCTGCCTG
TATTTTTATCATTTTTGTCTTGTGCGGTAGCTTGCGTCTGATATCATCTT
ATCTACTCAAGCCCCTCGGGAGAACGGTGCTGAGATGCCCCAAAACGCCG
GGGTATAAAAACAAGCGATCTGACGTTTTGACCATCGACTGCCGACCTCG
TGTTGTTTGCTGCGGGCGTGTTTTAGGTGGCGCCCACGATCATTTCCTCT
GGGATCGCGCTTCAGATCCCAATCGTCCTTCTCCACCTCATCGGAGGACT
GATCGGATATGCGGTGAGCAGCGCGATCGAGAGTCGGCGTTAGGAATTTG
TCTGGAAATAAGGCGGGGGACCCTTTCCCTTACAGATCTCGCTATCTGAC
TCGCGCTCATCTTAAGTCCTCGGCGGTTTTCTCTTTCGTTCCTTAGAGCC
GGAAATGCCACGCTGGTGCCACGCGCCCTCATCAGTGGCGCCTCGCGTTT
CTAATCGAACTCCGTGCTGCGCGGCGCTTGGTTTACGATTTTTGGCTCTA
TCAGCGAAACCGCCATGTTATGAAACGTTCTTCGTTCCCCCACACCCCAA
CGAAATAGCAAGAGACCTTTATTTCCACACCGGGGTGAAATAATTGTTAT
AGCTTTGGCACTACACGCTTCATCTCTTTTCTTTTATTTTGTCTCTCGCC
CCATTCCCATTTATCGTACTTCACCCTCGCTTGACTGGCTGTTAACGATC
GGGACACGATTCATCCTGATGTCGCAAGAGACGTTCGATTTTTTTTATGC
AGATTCCCCCCCCTCAATGCGCCTTTTACTCACTCGCGTCTTCCTTTTCT
TGACTCGTCCAGCTACCTAGGTACATGGGCTTTTCCGAGGTGTCCGCCCG
GACGATGGCGATCGAGACCTCCATGAAGTCTTCCGCGTTCGGCTTTCTTC
TCGCAAAGCTTCACTTCGGCTCGTTCGAGGCTCGCGTACCCGCCGCGATC
TCCGTGGTGTGGATGGCGATCACTGGGTCCATGCTGGCCATCGTGTGGCG
CTACATCCCCGTGAGGGCCCCTACGTTCGACCGGAAAGTCAAGGAACGTT
TCGAGAAGGTGAGGGAGAAGTCTAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig122083:95..1973-

>mRNA_H-elongata_contig122083.1688.1 ID=mRNA_H-elongata_contig122083.1688.1|Name=mRNA_H-elongata_contig122083.1688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig122083:95..1973- (Himanthalia elongata Himel1 dioecious)
ATGATGACCACCATTACCACTCTTGGGGCGATCGTCATGACCCCGCTGCT
GTGCAAGATCATGCTCGGAACCGTGGTACCCGTCGACGCTATTGGCATCG
CCGTGTCCACCATCCAGATGATGACCACCATTACCACTCTTGGGGCGATC
GTCATGACCCCGCTGCTGTGCAAGATCATGCTCGGAACCGTGGTACCCGT
CGACGCTATTGGCATCGCCGTGTCCACCATCCAGGTGGTGCTCGCGCCCA
TCTTGGTAGGCATGATGACCAACAAGTTCTTCCCCAAAGCCGTTAACGCT
GTGCTCCCCGTGACCCCAGTGGTGGGCGTGCTGTCCACGTGCTTCTTGGT
CGCCTCGGCCGTGGTGCTCGCGCCCATCTTGGTAGGCATGATGACCAACA
AGTTCTTCCCCAAAGCCGTTAACGCTGTGCTCCCCGTGACCCCAGTGGTG
GGCGTGCTGTCCACGTGCTTCTTGGTCGCCTCGGCCGTGGCGCCCACGAT
CATTTCCTCTGGGATCGCGCTTCAGATCCCAATCGTCCTTCTCCACCTCA
TCGGAGGACTGATCGGATATGCGGTGGCGCCCACGATCATTTCCTCTGGG
ATCGCGCTTCAGATCCCAATCGTCCTTCTCCACCTCATCGGAGGACTGAT
CGGATATGCGCTACCTAGGTACATGGGCTTTTCCGAGGTGTCCGCCCGGA
CGATGGCGATCGAGACCTCCATGAAGTCTTCCGCGTTCGGCTTTCTTCTC
GCAAAGCTTCACTTCGGCTCGTTCGAGGCTCGCGTACCCGCCGCGATCTC
CGTGGTGTGGATGGCGATCACTGGGTCCATGCTGGCCATCGTGTGGCGCT
ACATCCCCGTGAGGGCCCCTACGTTCGACCGGAAAGTCAAGGAACGTTTC
GAGAAGGTGAGGGAGAAGTCTAAATAGCTACCTAGGTACATGGGCTTTTC
CGAGGTGTCCGCCCGGACGATGGCGATCGAGACCTCCATGAAGTCTTCCG
CGTTCGGCTTTCTTCTCGCAAAGCTTCACTTCGGCTCGTTCGAGGCTCGC
GTACCCGCCGCGATCTCCGTGGTGTGGATGGCGATCACTGGGTCCATGCT
GGCCATCGTGTGGCGCTACATCCCCGTGAGGGCCCCTACGTTCGACCGGA
AAGTCAAGGAACGTTTCGAGAAGGTGAGGGAGAAGTCTAAATAG
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