mRNA_H-elongata_contig122059.1685.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122059.1685.1
Unique NamemRNA_H-elongata_contig122059.1685.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122059.1685.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.480e-16
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 ATNNTDYQLLASKDVSIFADNNFVTKTVLASVSPGDSFRTCLGTDPAIKVKHVP---LSRARSIV 186
            ATNNTDY LLAS DVSIF DN+FVTKT LASVSPG+SF+T LG DPA+K+   P    S+ R I+
Sbjct:  403 ATNNTDYLLLASNDVSIFFDNSFVTKTSLASVSPGESFQTFLGIDPAVKIIVAPPRKTSKKRGII 467
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BLAST of mRNA_H-elongata_contig122059.1685.1 vs. uniprot
Match: D8LRM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.400e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 ATNNTDYQLLASKDVSIFADNNFVTKTVLASVSPGDSFRTCLGTDPAIKVKHVP 162
            ATNNTDY LLAS+DVSIF DN+FV KT L SVSPG+SF+T LG DPA+KVK  P
Sbjct:  564 ATNNTDYLLLASEDVSIFFDNSFVAKTSLTSVSPGESFQTFLGIDPAVKVKVAP 617
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BLAST of mRNA_H-elongata_contig122059.1685.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 8.640e-16
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 ATNNTDYQLLASKDVSIFADNNFVTKTVLASVSPGDSFRTCLGTDPAIKVKHVP 162
            ATNNTDY LLAS DVSIF DN+FVTKT L SVSPG+SF+T LG DPA+K+   P
Sbjct:  435 ATNNTDYLLLASNDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAP 488
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BLAST of mRNA_H-elongata_contig122059.1685.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 8.650e-16
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 ATNNTDYQLLASKDVSIFADNNFVTKTVLASVSPGDSFRTCLGTDPAIKVKHVP 162
            ATNNTDY LLAS DVSIF DN+FVTKT L SVSPG+SF+T LG DPA+K+   P
Sbjct:  477 ATNNTDYLLLASNDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAP 530
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BLAST of mRNA_H-elongata_contig122059.1685.1 vs. uniprot
Match: A0A6H5KAH2_9PHAE (DUF4139 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.000e-15
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 ATNNTDYQLLASKDVSIFADNNFVTKTVLASVSPGDSFRTCLGTDPAIKVKHVPLSR 171
            ATNNTDY LLAS DVSIF DN+F+TKT L SV PG+SF+T LG DPA+K+   PL +
Sbjct:  313 ATNNTDYLLLASNDVSIFFDNSFITKTSLTSVCPGESFQTFLGIDPAVKITVGPLRK 369
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BLAST of mRNA_H-elongata_contig122059.1685.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.010e-15
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 ATNNTDYQLLASKDVSIFADNNFVTKTVLASVSPGDSFRTCLGTDPAIKVKHVP 162
            ATNNTDY LLAS +VSIF DN+FVTKT L+SVSPG+SF+T LG DPA+K+   P
Sbjct:  446 ATNNTDYLLLASNNVSIFFDNSFVTKTSLSSVSPGESFQTFLGIDPAVKITVAP 499
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BLAST of mRNA_H-elongata_contig122059.1685.1 vs. uniprot
Match: UPI001C7A6863 (uncharacterized protein n=1 Tax=Guyanagaster necrorhizus MCA 3950 TaxID=1450536 RepID=UPI001C7A6863)

HSP 1 Score: 50.1 bits (118), Expect = 1.780e-5
Identity = 24/56 (42.86%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    4 TNNTDYQLLASKDVSIFADNNFVTKTVLASVSPGDSFRTCLGTDPAIKVKHVPLSR 171
            TN +DY LLA    SI+ D +F+++++L SVSP +SF   LG DP++++ + P S+
Sbjct:  386 TNASDYSLLAGS-ASIYVDGSFISRSLLPSVSPQESFDCPLGLDPSLRITYHPQSK 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122059.1685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LRN6_ECTSI2.480e-1666.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRM9_ECTSI3.400e-1674.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN8_ECTSI8.640e-1672.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN5_ECTSI8.650e-1672.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAH2_9PHAE3.000e-1566.67DUF4139 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LRN7_ECTSI3.010e-1570.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001C7A68631.780e-542.86uncharacterized protein n=1 Tax=Guyanagaster necro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122059contigH-elongata_contig122059:370..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D8LRN6
GOsGO:0003674,GO:0005488,GO:0005515
EggNOG free text desc.Domain of unknown function (DUF4139)
EggNOG OGs28Q1A@1,2QWQ0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.378016-CDS-H-elongata_contig122059:369..5581622929718.378016-CDS-H-elongata_contig122059:369..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122059 370..558 -
1691679131.0591457-CDS-H-elongata_contig122059:369..5581691679131.0591457-CDS-H-elongata_contig122059:369..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122059 370..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122059.1685.1prot_H-elongata_contig122059.1685.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122059 370..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122059.1685.1

>prot_H-elongata_contig122059.1685.1 ID=prot_H-elongata_contig122059.1685.1|Name=mRNA_H-elongata_contig122059.1685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
ATNNTDYQLLASKDVSIFADNNFVTKTVLASVSPGDSFRTCLGTDPAIKV
KHVPLSRARSIV*
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mRNA from alignment at H-elongata_contig122059:370..558-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122059.1685.1 ID=mRNA_H-elongata_contig122059.1685.1|Name=mRNA_H-elongata_contig122059.1685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig122059:370..558- (Himanthalia elongata Himel1 dioecious)
GCGACGAACAACACCGACTACCAGCTTCTGGCGAGCAAGGACGTATCGAT
CTTCGCCGATAACAACTTCGTCACGAAAACTGTCCTCGCCTCGGTTTCCC
CCGGGGACTCTTTCCGGACGTGTCTAGGAACCGACCCCGCCATCAAGGTA
AAGCATGTACCCTTGTCACGTGCAAGATCTATAGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig122059:370..558-

>mRNA_H-elongata_contig122059.1685.1 ID=mRNA_H-elongata_contig122059.1685.1|Name=mRNA_H-elongata_contig122059.1685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig122059:370..558- (Himanthalia elongata Himel1 dioecious)
GCGACGAACAACACCGACTACCAGCTTCTGGCGAGCAAGGACGTATCGAT
CTTCGCCGATAACAACTTCGTCACGAAAACTGTCCTCGCCTCGGTTTCCC
CCGGGGACTCTTTCCGGACGTGTCTAGGAACCGACCCCGCCATCAAGGTA
AAGCATGTACCCTTGTCACGTGCAAGATCTATAGTATAGGCGACGAACAA
CACCGACTACCAGCTTCTGGCGAGCAAGGACGTATCGATCTTCGCCGATA
ACAACTTCGTCACGAAAACTGTCCTCGCCTCGGTTTCCCCCGGGGACTCT
TTCCGGACGTGTCTAGGAACCGACCCCGCCATCAAGGTAAAGCATGTACC
CTTGTCACGTGCAAGATCTATAGTATAG
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