mRNA_H-elongata_contig122042.1684.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: D7G1L6_ECTSI (PEPD_MOUSE Xaa-Pro dipeptidase (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L6_ECTSI) HSP 1 Score: 182 bits (463), Expect = 5.340e-56 Identity = 86/131 (65.65%), Postives = 103/131 (78.63%), Query Frame = 1
Query: 97 ATATKEGLRPGHHPLDMPPL--HPTVGDYPVDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
ATA + P P +MP L HPTVG+YPVDY+MH+++R K++ R+R T GV R VLL RGGL+A RDETDHEP+FRQESTFHYLFGVREP+CL +DL TGKA ++IPRLPAEYA WMG I+PP HFQ
Sbjct: 34 ATAKRSKKNP-RVPSEMPALELHPTVGEYPVDYTMHAENRGKVINRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPNCLATIDLETGKATLFIPRLPAEYATWMGDILPPKHFQ 163
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A6H5KDB9_9PHAE (AMP_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB9_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.400e-52 Identity = 88/133 (66.17%), Postives = 106/133 (79.70%), Query Frame = 1
Query: 91 AAATATKEGLRPGHHPLDMPPL--HPTVGDYPVDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
AAA +K+ R P +MP L HPTVG+YPVDY+MH+++RAK++ R+R T GV R VLL RGGL+A RDETDHEP+FRQESTFHYLFGVREPDCL +DL TGKA ++IPRLPA YA WMG+I+PP HFQ
Sbjct: 34 AAAKRSKKNPR---VPSEMPALELHPTVGEYPVDYTMHAENRAKVINRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAVYATWMGEILPPKHFQ 163
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A7S1CA66_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA66_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.320e-36 Identity = 61/103 (59.22%), Postives = 83/103 (80.58%), Query Frame = 1
Query: 181 VDYSMHSQHRAKLVERMRATQG--VPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
+D+S+H+++RA +V+ ++ G VP ++V+L +GG++ RD+TDHEPLFRQES FHYLFGVREPDC GA+D+ATG A ++IPRLP YA WMG I+PP HFQ
Sbjct: 25 IDFSLHARNRAAVVDNLKRFGGATVPEKAVILVQGGVAETRDDTDHEPLFRQESNFHYLFGVREPDCFGAIDVATGAATLFIPRLPDVYATWMGDILPPAHFQ 127
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A388JTW8_CHABU (AMP_N domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTW8_CHABU) HSP 1 Score: 117 bits (294), Expect = 1.120e-29 Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 1
Query: 169 GDYPVDYSMHSQHRAKLV----ERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
G +PV SMH+ +R +LV +R++ + G P SV+L GG+S R TDHEPLFRQES F YLFGV+EP GA+DLATGK +++P LP +YA+WMG I P HF+
Sbjct: 31 GTHPVPMSMHAGNRKRLVTKMLKRIQESGGSPRNSVVLLEGGVSETRYCTDHEPLFRQESYFSYLFGVKEPGFYGALDLATGKCFLFMPLLPKDYAVWMGTIHGPEHFK 139
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A7S1H3N2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H3N2_HEMAN) HSP 1 Score: 114 bits (284), Expect = 3.310e-29 Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 181 VDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKI 462
V SMH+Q+R +LV M + V L GG S RD++DHE +FRQES FHYLFGV EPDCLGAVD+ G A ++IPRLPA+YA+WMG I
Sbjct: 16 VPRSMHAQNRQRLVSLMNKQS---CKGVALLLGGTSKTRDDSDHEEIFRQESNFHYLFGVAEPDCLGAVDVRNGAATLFIPRLPADYAMWMGPI 106
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A1Y1HWQ9_KLENI (Metallopeptidase M24 family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWQ9_KLENI) HSP 1 Score: 120 bits (302), Expect = 5.090e-29 Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = 1
Query: 139 LDMPPLHPTVGDYPVDYSMHSQHRAKLVERMRATQGVPARS--VLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
+ P P Y V S+H+++RAKLV+ + T + V+L +GG R +TDHEPLFRQES F YLFGV E GAVD+ATGK++++ PRLP+EYAIWMGKI PP HF+
Sbjct: 21 IKKPVNQPRFEKYVVPMSLHAENRAKLVKALGETLSAAGKENGVVLLQGGEQQTRYDTDHEPLFRQESYFAYLFGVTEAGFYGAVDVATGKSILFAPRLPSEYAIWMGKIQPPQHFK 137
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: H2ZPY4_CIOSA (AMP_N domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZPY4_CIOSA) HSP 1 Score: 116 bits (291), Expect = 1.540e-28 Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 178 PVDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
PV S+ + +R +L ++++A + VP S++L +GG Q+D TD + FRQES F + FGV EPDC G +++A+GKAV++IP+LP EY +WMG+I PP HFQ
Sbjct: 1 PVSMSLFANNRKRLCDKLKAKK-VPENSIVLLQGGQQTQQDSTDRDITFRQESYFQWCFGVTEPDCFGTIEVASGKAVLFIPKLPKEYQVWMGEIYPPSHFQ 101
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: L8GWD9_ACACA (Peptidase D, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWD9_ACACA) HSP 1 Score: 118 bits (295), Expect = 3.870e-28 Identity = 53/97 (54.64%), Postives = 72/97 (74.23%), Query Frame = 1
Query: 175 YPVDYSMHSQHRAKLVERM-RATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKI 462
+PV +M ++R +L+ R ++ +G P SV+L RGG + R ETDHE LFRQES FH+ FGV +PDC GA+DL +A+++IPRLPAEYA+WMGKI
Sbjct: 14 HPVPMAMFRENRERLIARFEKSAEGTPEGSVVLLRGGKAKMRHETDHEHLFRQESFFHWTFGVADPDCFGAIDLKRRRAILFIPRLPAEYAVWMGKI 110
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A3M6TRW1_POCDA (AMP_N domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TRW1_POCDA) HSP 1 Score: 112 bits (280), Expect = 3.910e-28 Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 181 VDYSMHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHFQ 483
+ S+H+ +R +L ER++ +GVP+ +++L +GG +QR TD + +FRQES FH+ FGV E DC GAV++ T A++++PRLP EYAIWMGKI HFQ
Sbjct: 62 IPVSLHATNRKRLCERLKKIEGVPSGAIVLLQGGEQSQRYCTDTDVVFRQESYFHWTFGVLEADCFGAVEVDTACAILFVPRLPPEYAIWMGKIHSQEHFQ 162
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Match: A0A058ZCZ0_FONAL (AMP_N domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZCZ0_FONAL) HSP 1 Score: 118 bits (296), Expect = 4.070e-28 Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 166 VGDYPVDYS-MHSQHRAKLVERMRATQGVPARSVLLFRGGLSAQRDETDHEPLFRQESTFHYLFGVREPDCLGAVDLATGKAVIYIPRLPAEYAIWMGKIMPPGHF 480
G + +D + +H HRAKL ERM+ V A +VL GG+ A RD TDHEPLFRQES FHYLFGVRE +GAV L TG+++++ PRLP YA+WMG I PP HF
Sbjct: 19 AGTFEIDLAALHGAHRAKLAERMQ----VDAWAVLA--GGVQATRDATDHEPLFRQESFFHYLFGVREAGFMGAVHLKTGRSLLFAPRLPEAYAVWMGTIHPPSHF 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122042.1684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122042.1684.1 >prot_H-elongata_contig122042.1684.1 ID=prot_H-elongata_contig122042.1684.1|Name=mRNA_H-elongata_contig122042.1684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp MVTSGDAGSTSISLLSPAPSTAFLPAAATATKEGLRPGHHPLDMPPLHPTback to top mRNA from alignment at H-elongata_contig122042:199..693- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122042.1684.1 ID=mRNA_H-elongata_contig122042.1684.1|Name=mRNA_H-elongata_contig122042.1684.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig122042:199..693- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122042:199..693- >mRNA_H-elongata_contig122042.1684.1 ID=mRNA_H-elongata_contig122042.1684.1|Name=mRNA_H-elongata_contig122042.1684.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig122042:199..693- (Himanthalia elongata Himel1 dioecious)back to top |