mRNA_H-elongata_contig122026.1682.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122026.1682.1
Unique NamemRNA_H-elongata_contig122026.1682.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: A0A6H5L4N8_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N8_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 5.690e-102
Identity = 155/178 (87.08%), Postives = 175/178 (98.31%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +GTPEYA+ILAFDVKIDSDAR+HA+E+GVRIFTADIIYHLFDQFTA+MDRLMEQRRQDA+NLAVFPCIVKIMK HVFNMKDPIIVGMEV+EG+LRVGTPLCIP +GG+EIGRVTSIEQNHREVDK+ KG+SGAVR+DDAHGGSTLTYGRQFSA+SG+L+SSITRETINALKAHF++Q+
Sbjct:  878 KGTPEYATILAFDVKIDSDARRHADENGVRIFTADIIYHLFDQFTAHMDRLMEQRRQDAKNLAVFPCIVKIMKEHVFNMKDPIIVGMEVIEGNLRVGTPLCIPAMGGMEIGRVTSIEQNHREVDKMGKGASGAVRVDDAHGGSTLTYGRQFSADSGSLYSSITRETINALKAHFREQL 1055
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: A0A836CHS5_9STRA (Tr-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS5_9STRA)

HSP 1 Score: 267 bits (683), Expect = 1.060e-80
Identity = 132/178 (74.16%), Postives = 154/178 (86.52%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +G PEYA+ILAFDV+ID+DAR +AEE GVRIFTADIIYHLFDQFTA+M  LMEQRR DA+  AVFPCI KIM  HVFN KDPIIVGMEV+EG+LRVGTPLCIP L GL IGRV SIE NHR+V K++KG SGAVRI+DA+GGSTLTYGRQF A SG+L+S I+R +I+ALKA+F+ +V
Sbjct:  825 KGKPEYATILAFDVRIDADARAYAEEVGVRIFTADIIYHLFDQFTAFMANLMEQRRTDAQATAVFPCICKIMPQHVFNKKDPIIVGMEVIEGTLRVGTPLCIPALEGLPIGRVASIEDNHRQVQKLAKGGSGAVRIEDANGGSTLTYGRQFDATSGSLYSMISRPSIDALKANFRAEV 1002
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: A0A7S0CGW3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW3_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.990e-66
Identity = 107/178 (60.11%), Postives = 139/178 (78.09%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +G  EYA+ILAFDVK++ DAR HA E GVRIFTADIIYHLFDQFT +M+ L E RR++A  +AVFP I +I+  H+FN KDPIIVG+EV EG L++GTPLCIP L GL IG+VTSIE N ++ D   KG+S AV+I++ H   TLTYGRQF + + +L+S +TR +I+ALK +FKD++
Sbjct:  177 RGVSEYATILAFDVKVEPDARDHAREMGVRIFTADIIYHLFDQFTRFMEELSETRREEAAAIAVFPSICRILPQHIFNQKDPIIVGIEVAEGILKIGTPLCIPALEGLYIGKVTSIEMNGKQQDTARKGASVAVKIENEHN-PTLTYGRQFDS-TNSLYSQVTRASIDALKTNFKDKL 352
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: A0A7R9ZL82_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZL82_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.260e-65
Identity = 104/171 (60.82%), Postives = 136/171 (79.53%), Query Frame = 1 
Query:   19 YASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKD 531
            YA+ILAFDV I+ +AR+HA + GVRI TADIIYHLFDQFT +MD L ++RR++A  +AVFP I+KI+  HVFN KDPIIVG+EV+EG L+VGTPLC+P LGGL +G+VTSIE + RE D   KGSS A++I +  G   +TYGRQF A + +L+S++TR +I+ALK +FKD
Sbjct:    1 YATILAFDVDIEREAREHATDMGVRIMTADIIYHLFDQFTRFMDDLTQRRREEAAAVAVFPSIIKILPQHVFNQKDPIIVGVEVVEGILKVGTPLCVPALGGLHVGKVTSIENSGREQDTAKKGSSVAIKIVN-EGNPNITYGRQFDA-AHSLYSTLTRASIDALKENFKD 169
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: A0A7S1D5X2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5X2_CYCTE)

HSP 1 Score: 211 bits (538), Expect = 1.660e-64
Identity = 104/178 (58.43%), Postives = 139/178 (78.09%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +G PE+A+ILAFDV+++ +AR HA+E  VRIFTADIIYHLFDQFT +M+ L E+RR +A  +AVFP I KI+  H+FN KDPIIVG+EV+EG L+VGTPLC+P LGGL +G+VTSIE N RE     KGSS A++I +      LTYGRQF A + +L+S+++R +I+ALK +FKD++
Sbjct:  187 KGAPEFATILAFDVEVEKEARDHAQEMSVRIFTADIIYHLFDQFTRFMEELTERRRAEAAEIAVFPSICKILPQHIFNQKDPIIVGVEVVEGILKVGTPLCVPALGGLHVGKVTSIESNGREQQTARKGSSVAIKIVN-ESNPNLTYGRQFDA-THSLYSTLSRASIDALKENFKDKL 362
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: B7GD73_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD73_PHATC)

HSP 1 Score: 217 bits (552), Expect = 2.100e-64
Identity = 106/178 (59.55%), Postives = 143/178 (80.34%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +G PE+A+ILAFDV I+ +AR+HAE+ GVRI TADIIYHLFDQFT +MD L +++R++A  +AVFP I++++  HVFN KDPIIVG+E++EG L+VGTPLC+P LGGL IG+VTSIE N RE +   KG S A++I +     T+TYGRQF + S +L+SS+TR +I+ALKAHFK+Q+
Sbjct:  406 KGHPEFATILAFDVDIEREAREHAEDMGVRIMTADIIYHLFDQFTRFMDELNQRKREEATAVAVFPSIIRVLPQHVFNQKDPIIVGVEIVEGILKVGTPLCVPALGGLHIGKVTSIEMNGREQETARKGLSVAIKIVN-ESNPTITYGRQFDS-SHSLYSSLTRASIDALKAHFKEQL 581
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: B8BV18_THAPS (Tr-type G domain-containing protein n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BV18_THAPS)

HSP 1 Score: 216 bits (551), Expect = 2.530e-64
Identity = 108/178 (60.67%), Postives = 141/178 (79.21%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +G PEYA+ILAFDV ++ +AR+ AEE  VRIFTADIIYHLFDQFT +M++L E+RR+DA  +AVFP I+KI+  HVFN KDPIIVG+EV+EG L+VGTPLC+P LGGL +G VTSIE N RE +   KGSS A++I +     T+TYGRQF A S +L+S ++R +I+ALK HFK+++
Sbjct:  398 KGCPEYATILAFDVPVEREAREQAEEVNVRIFTADIIYHLFDQFTRFMEQLTEKRREDAAAIAVFPSIIKILPQHVFNQKDPIIVGVEVVEGILKVGTPLCVPALGGLTVGTVTSIESNGREQETAKKGSSVAIKIVN-ESNPTITYGRQFDA-SHSLYSHLSRASIDALKLHFKEKL 573
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: A0A7R9WHP7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHP7_9STRA)

HSP 1 Score: 219 bits (557), Expect = 7.010e-64
Identity = 107/178 (60.11%), Postives = 143/178 (80.34%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +G  EYA+ILAFDV ++ +AR+HA E  VRIFTADIIYHLFDQFT +M+ L E+RRQDA ++AVFP I+KI+  HVFN KDPIIVG+EV+EG L+VGTPLC+P +GGL +G+VTSIE N RE +   KG+S AV+I +     T+TYGRQF + + +L+S++TR++I+ALK HFKD++
Sbjct:  588 KGCGEYATILAFDVPVEREAREHANEMSVRIFTADIIYHLFDQFTRFMEELTERRRQDAADVAVFPSIIKILPQHVFNQKDPIIVGVEVVEGILKVGTPLCVPAIGGLHVGKVTSIESNGREQETAKKGASVAVKIVN-ESNPTITYGRQFDS-THSLYSTLTRQSIDALKEHFKDKL 763
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: A0A7S2Y322_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y322_9STRA)

HSP 1 Score: 221 bits (563), Expect = 7.130e-64
Identity = 110/178 (61.80%), Postives = 141/178 (79.21%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +G PE+A++LAFDV +  +AR+HA E GVRI TADIIYHLFDQFT +MD L ++RR++A  +AVFP IVKI+  H+FN KDPIIVGME++EG L+VGTPLC+P LGGL +G+V SIE N RE +   KG+S AV+I +     TLTYGRQF A S  L+S++TRE+I+ALKAHFKDQ+
Sbjct:  805 KGRPEFATVLAFDVDVSKEAREHATEMGVRIMTADIIYHLFDQFTRFMDELNQRRREEAAAVAVFPSIVKILPQHIFNQKDPIIVGMEIVEGILKVGTPLCVPALGGLFVGKVDSIESNGREQETARKGNSVAVKIVN-ESNPTLTYGRQFDA-SNMLYSTLTRESIDALKAHFKDQL 980
[Close]
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Match: A0A7S4K8F1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K8F1_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.260e-63
Identity = 110/178 (61.80%), Postives = 144/178 (80.90%), Query Frame = 1 
Query:    4 QGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMDRLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTPLCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGRQFSAESGNLFSSITRETINALKAHFKDQV 537
            +G  E+A+ILAFDV ++ +AR+HA E GVRIFTADIIYHLFDQFT +M+ L E+RRQDA ++AVFP IVKI+  HVFN KDPIIVG+EV+EG L+VGTPLC+P LGGL IG+VTSIE N RE +   KGSS A++I +     T+TYGRQF + + +L+S++TR++I+ALK HFKD++
Sbjct:  745 KGCSEFATILAFDVPVEKEAREHATEMGVRIFTADIIYHLFDQFTRFMEELTERRRQDAADVAVFPSIVKILPQHVFNQKDPIIVGVEVVEGILKVGTPLCVPVLGGLHIGKVTSIECNSREQETARKGSSVAIKIVN-ESNPTITYGRQFDS-THSLYSTLTRQSIDALKEHFKDKL 920
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122026.1682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N8_9PHAE5.690e-10287.08Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CHS5_9STRA1.060e-8074.16Tr-type G domain-containing protein n=1 Tax=Tribon... [more]
A0A7S0CGW3_9STRA1.990e-6660.11Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9ZL82_9STRA1.260e-6560.82Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1D5X2_CYCTE1.660e-6458.43Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7GD73_PHATC2.100e-6459.55Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
B8BV18_THAPS2.530e-6460.67Tr-type G domain-containing protein n=2 Tax=Thalas... [more]
A0A7R9WHP7_9STRA7.010e-6460.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2Y322_9STRA7.130e-6461.80Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4K8F1_9STRA1.260e-6361.80Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122026contigH-elongata_contig122026:111..1502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.6
Seed ortholog evalue6e-86
Seed eggNOG ortholog2880.D8LKY1
Preferred nameFUN12
KEGG koko:K03243,ko:K12834
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00352
GOsGO:0000166,GO:0000462,GO:0001732,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030687,GO:0031323,GO:0031326,GO:0031369,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033290,GO:0034248,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1144@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEIF5B, eukaryotic translation initiation factor 5B
Ec32 orthologEc-11_005980.1
Exons3
Model size537
Cds size537
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122026.1682.1prot_H-elongata_contig122026.1682.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122026 111..1502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.2088633-CDS-H-elongata_contig122026:110..3231622929718.2088633-CDS-H-elongata_contig122026:110..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122026 111..323 +
1691679130.9604912-CDS-H-elongata_contig122026:110..3231691679130.9604912-CDS-H-elongata_contig122026:110..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122026 111..323 +
1622929718.2194421-CDS-H-elongata_contig122026:556..7001622929718.2194421-CDS-H-elongata_contig122026:556..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122026 557..700 +
1691679130.9730518-CDS-H-elongata_contig122026:556..7001691679130.9730518-CDS-H-elongata_contig122026:556..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122026 557..700 +
1622929718.2306106-CDS-H-elongata_contig122026:1322..15021622929718.2306106-CDS-H-elongata_contig122026:1322..1502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122026 1323..1502 +
1691679130.9819443-CDS-H-elongata_contig122026:1322..15021691679130.9819443-CDS-H-elongata_contig122026:1322..1502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122026 1323..1502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122026.1682.1

>prot_H-elongata_contig122026.1682.1 ID=prot_H-elongata_contig122026.1682.1|Name=mRNA_H-elongata_contig122026.1682.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MQGTPEYASILAFDVKIDSDARKHAEESGVRIFTADIIYHLFDQFTAYMD
RLMEQRRQDARNLAVFPCIVKIMKAHVFNMKDPIIVGMEVLEGSLRVGTP
LCIPGLGGLEIGRVTSIEQNHREVDKISKGSSGAVRIDDAHGGSTLTYGR
QFSAESGNLFSSITRETINALKAHFKDQV
back to top

mRNA from alignment at H-elongata_contig122026:111..1502+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122026.1682.1 ID=mRNA_H-elongata_contig122026.1682.1|Name=mRNA_H-elongata_contig122026.1682.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1392bp|location=Sequence derived from alignment at H-elongata_contig122026:111..1502+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGGAACGCCCGAGTACGCATCCATTCTGGCCTTCGATGTTAAAAT
AGACAGCGATGCCCGCAAGCACGCAGAAGAATCGGGGGTCCGGATCTTCA
CGGCGGACATAATCTACCACTTGTTCGACCAGTTCACCGCCTATATGGAC
CGTCTCATGGAGCAGAGGAGGCAGGACGCACGGAACTTGGCCGTCTTCCC
GTGCATCGTTAAGGTAAGGGTCCGAGATGGAATCCTCGAAAGAGTCTTGT
GTGGCTTCAAAAATCGCCTTACTGACAGGGGGCGACAGCCTCTCGAGAGA
GTCGACGCTGGAGTCAGGACGTCCAGCGAGATAGCTTGGTTGAGGCCAAG
TCCTGCGGTCCTTGAATTGTATTTTAGTTTATTTTGTTTTATTTTTTCTG
GGTGGAAATGGAAAACGTTTGCGCGTGACGTGTCCGTTGGCGACAGATCA
TGAAAGCGCACGTGTTCAACATGAAGGACCCAATCATCGTGGGTATGGAG
GTCCTCGAAGGCAGTCTCCGCGTGGGGACGCCGCTGTGCATCCCCGGCCT
TGGAGGCCTGGAGATCGGCCGCGTTACTTCCATCGAGCAGGTTTTATTAA
CAGTATAGTATGAGGGTTTATAGAGATAACAATTCGGTTTCAATAGGGAG
GGTGATTTTTTCTGCCTTTTCTAAAAAATCAAATAAAATTAATTCCAACT
CTTCGAACATCCACGTAATATTTTACACCATGAGACTTGTAGTCCAGGGA
ATCAATTATCGCCAGGTTGAAGTGGTCTATTACTGCCTGTCATTGTTTTT
GTTTTCCTCTAGCTTAGAGCCTAAGCCTTTACTTAGGCTGCCAGAGAAAT
TTCCTCAAGAGAAAGGTGTAAAAGTTTAAAACACTCATTTTGGACAACAA
TACGTCCCCCATCATATATATTTTTCCGAGGGTATTTCTGTTTTCTGAAA
AGGGCAATCTCTCCAAAAACGCATGTCGCAAAAATAATATTGGATGCGAC
TGGTAATTTTCTTTTTTCAATTATAAATGTGTATGCATATATACATTTGT
GTGATTTTTCTCTTTTTTTTTCTATGATATTTTACATTTTTTTTTTTTCT
CTATATATATATATATTTTTTTTTTAAATTAATTTTTATTATTATTATTT
GGTTTGTTTGATTTTATTTTAAATATTATTATTATTTACGAACGCCATTT
TTTTTCGGGCAGAACCACCGAGAGGTGGACAAGATTTCGAAGGGGTCTTC
TGGTGCGGTGAGGATAGACGATGCCCACGGGGGGTCGACCTTGACCTATG
GCCGACAGTTCAGTGCCGAATCGGGCAACCTCTTTAGCAGCATTACGCGA
GAAACGATCAACGCCCTCAAGGCGCACTTCAAGGACCAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig122026:111..1502+

>mRNA_H-elongata_contig122026.1682.1 ID=mRNA_H-elongata_contig122026.1682.1|Name=mRNA_H-elongata_contig122026.1682.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig122026:111..1502+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGGAACGCCCGAGTACGCATCCATTCTGGCCTTCGATGTTAAAAT
AGACAGCGATGCCCGCAAGCACGCAGAAGAATCGGGGGTCCGGATCTTCA
CGGCGGACATAATCTACCACTTGTTCGACCAGTTCACCGCCTATATGGAC
CGTCTCATGGAGCAGAGGAGGCAGGACGCACGGAACTTGGCCGTCTTCCC
GTGCATCGTTAAGATGCAGGGAACGCCCGAGTACGCATCCATTCTGGCCT
TCGATGTTAAAATAGACAGCGATGCCCGCAAGCACGCAGAAGAATCGGGG
GTCCGGATCTTCACGGCGGACATAATCTACCACTTGTTCGACCAGTTCAC
CGCCTATATGGACCGTCTCATGGAGCAGAGGAGGCAGGACGCACGGAACT
TGGCCGTCTTCCCGTGCATCGTTAAGATCATGAAAGCGCACGTGTTCAAC
ATGAAGGACCCAATCATCGTGGGTATGGAGGTCCTCGAAGGCAGTCTCCG
CGTGGGGACGCCGCTGTGCATCCCCGGCCTTGGAGGCCTGGAGATCGGCC
GCGTTACTTCCATCGAGCAGATCATGAAAGCGCACGTGTTCAACATGAAG
GACCCAATCATCGTGGGTATGGAGGTCCTCGAAGGCAGTCTCCGCGTGGG
GACGCCGCTGTGCATCCCCGGCCTTGGAGGCCTGGAGATCGGCCGCGTTA
CTTCCATCGAGCAGAACCACCGAGAGGTGGACAAGATTTCGAAGGGGTCT
TCTGGTGCGGTGAGGATAGACGATGCCCACGGGGGGTCGACCTTGACCTA
TGGCCGACAGTTCAGTGCCGAATCGGGCAACCTCTTTAGCAGCATTACGC
GAGAAACGATCAACGCCCTCAAGGCGCACTTCAAGGACCAGGTGAACCAC
CGAGAGGTGGACAAGATTTCGAAGGGGTCTTCTGGTGCGGTGAGGATAGA
CGATGCCCACGGGGGGTCGACCTTGACCTATGGCCGACAGTTCAGTGCCG
AATCGGGCAACCTCTTTAGCAGCATTACGCGAGAAACGATCAACGCCCTC
AAGGCGCACTTCAAGGACCAGGTG
back to top