mRNA_H-elongata_contig121985.1679.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121985.1679.1
Unique NamemRNA_H-elongata_contig121985.1679.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.080e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   58 GLRKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            G RKQLV+MDEVDGMGGSDRGGI ELILLIKK++VPIIAICNDRQH KIR
Sbjct:  564 GFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIR 613          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A0L0HA68_SPIPD (Replication factor C subunit 1 n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HA68_SPIPD)

HSP 1 Score: 82.4 bits (202), Expect = 9.270e-17
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 QVLSFSKEGTSGGGSSGCGGLR---KQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            +  S S+ G++       GGLR   +Q+++MDEVDGM G DRGG  ELI LIKKTKVPII ICNDRQ PKI+
Sbjct:  557 EFFSSSENGSTNSNGKKTGGLRTGKRQVLVMDEVDGMSGGDRGGTAELIQLIKKTKVPIICICNDRQSPKIK 628          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: T0RT30_SAPDV (Replication factor C subunit 1 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RT30_SAPDV)

HSP 1 Score: 81.3 bits (199), Expect = 2.350e-16
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 QVLSFSKEGTSGGGSSGCGGLRKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            Q LSF       GGS+   GL+K+L++MDEVDGM   DRGG+ ELI +IKK+K PI+ ICNDRQ PK+R
Sbjct:  361 QALSF-------GGSATKMGLKKRLIVMDEVDGMSSGDRGGMAELIAIIKKSKTPIVCICNDRQSPKVR 422          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A507ETD7_9FUNG (BRCT domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ETD7_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 2.370e-16
Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 QVLSFSKEGTSGGGSSGCGGLR---KQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            +  S S+ G+        GGLR   +Q+++MDEVDGM G DRGG  ELI LIKKTKVPII ICNDRQ PKI+
Sbjct:  895 EFFSSSENGSINSNGKKAGGLRTGKRQVLVMDEVDGMSGGDRGGSAELIQLIKKTKVPIICICNDRQSPKIK 966          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1E1X5R4_9ACAR (Replication factor C subunit 1 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1X5R4_9ACAR)

HSP 1 Score: 80.9 bits (198), Expect = 3.200e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   43 SSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            SSGCG   K ++IMDEVDGM G+ DRGG+ ELI LIK T++PII ICNDR HPK+R
Sbjct:  276 SSGCGMTSKHVLIMDEVDGMAGNEDRGGVQELIALIKTTRIPIICICNDRSHPKMR 331          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1Y2GD29_9FUNG (Replication factor C subunit 1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GD29_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 4.410e-16
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   64 RKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            +KQL+IMDEVDGM G DRGGI +LI  IKKT+VPII ICNDRQ PK+R
Sbjct:  585 KKQLIIMDEVDGMAGGDRGGIAQLISFIKKTRVPIICICNDRQSPKVR 632          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A2K6GMT7_PROCO (Replication factor C subunit 1 n=6 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6GMT7_PROCO)

HSP 1 Score: 80.1 bits (196), Expect = 6.030e-16
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   40 GSSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            G + C G  K ++IMDEVDGM GS DRGGI ELI LIK TK+PII +CNDR HPKIR
Sbjct:  674 GGAACSGSTKHVLIMDEVDGMAGSEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 730          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1S3EKN1_DIPOR (Replication factor C subunit 1 n=6 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3EKN1_DIPOR)

HSP 1 Score: 79.7 bits (195), Expect = 8.240e-16
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   31 SGGGSSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            SGG   G  G  K  +IMDEVDGM G+ DRGGI ELI LIK TK+PII +CNDR HPKIR
Sbjct:  707 SGGSGGGASGSTKHALIMDEVDGMAGTEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 766          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A197K2W2_9FUNG (Replication factor C subunit 1 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K2W2_9FUNG)

HSP 1 Score: 79.3 bits (194), Expect = 1.120e-15
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   64 RKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            +KQL+IMDEVDGM G DRGG+ ++I  IKKT+VPII ICNDRQ PK+R
Sbjct:  556 KKQLIIMDEVDGMAGGDRGGVAQMIAFIKKTQVPIICICNDRQSPKVR 603          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: UPI0018A7B502 (replication factor C subunit 1-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A7B502)

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-15
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   67 KQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
            K  ++MDEVDGM G+ DRGG+ ELI LIKK+K+PII +CNDR HPKIR
Sbjct:   52 KHALVMDEVDGMSGNEDRGGVQELITLIKKSKIPIITMCNDRNHPKIR 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND0_ECTSI8.080e-2188.00Replication factor C subunit 1 n=2 Tax=Ectocarpus ... [more]
A0A0L0HA68_SPIPD9.270e-1758.33Replication factor C subunit 1 n=1 Tax=Spizellomyc... [more]
T0RT30_SAPDV2.350e-1657.97Replication factor C subunit 1 n=2 Tax=Saprolegnia... [more]
A0A507ETD7_9FUNG2.370e-1658.33BRCT domain-containing protein n=1 Tax=Spizellomyc... [more]
A0A1E1X5R4_9ACAR3.200e-1667.86Replication factor C subunit 1 (Fragment) n=1 Tax=... [more]
A0A1Y2GD29_9FUNG4.410e-1675.00Replication factor C subunit 1 n=1 Tax=Lobosporang... [more]
A0A2K6GMT7_PROCO6.030e-1668.42Replication factor C subunit 1 n=6 Tax=Lemuriforme... [more]
A0A1S3EKN1_DIPOR8.240e-1666.67Replication factor C subunit 1 n=6 Tax=Heteromyida... [more]
A0A197K2W2_9FUNG1.120e-1570.83Replication factor C subunit 1 n=1 Tax=Linnemannia... [more]
UPI0018A7B5021.500e-1568.75replication factor C subunit 1-like n=1 Tax=Penaeu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121985contigH-elongata_contig121985:206..412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D8LND0
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0022616,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901576
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.8932722-CDS-H-elongata_contig121985:205..4121622929717.8932722-CDS-H-elongata_contig121985:205..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121985 206..412 +
1691679130.7511244-CDS-H-elongata_contig121985:205..4121691679130.7511244-CDS-H-elongata_contig121985:205..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121985 206..412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121985.1679.1prot_H-elongata_contig121985.1679.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121985 206..412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121985.1679.1

>prot_H-elongata_contig121985.1679.1 ID=prot_H-elongata_contig121985.1679.1|Name=mRNA_H-elongata_contig121985.1679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
QVLSFSKEGTSGGGSSGCGGLRKQLVIMDEVDGMGGSDRGGIHELILLIK
KTKVPIIAICNDRQHPKIR
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mRNA from alignment at H-elongata_contig121985:206..412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121985.1679.1 ID=mRNA_H-elongata_contig121985.1679.1|Name=mRNA_H-elongata_contig121985.1679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig121985:206..412+ (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGTCCTTCTCAAAAGAAGGCACTAGTGGCGGCGGTAGCAGCGG GTGCGGGGGGCTGAGGAAACAGCTGGTGATCATGGACGAGGTGGATGGGA TGGGCGGCTCGGACCGCGGGGGCATCCATGAGCTGATATTGCTCATCAAG AAGACCAAGGTGCCTATCATCGCCATCTGCAACGACCGACAGCACCCAAA AATAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig121985:206..412+

>mRNA_H-elongata_contig121985.1679.1 ID=mRNA_H-elongata_contig121985.1679.1|Name=mRNA_H-elongata_contig121985.1679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig121985:206..412+ (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGTCCTTCTCAAAAGAAGGCACTAGTGGCGGCGGTAGCAGCGG
GTGCGGGGGGCTGAGGAAACAGCTGGTGATCATGGACGAGGTGGATGGGA
TGGGCGGCTCGGACCGCGGGGGCATCCATGAGCTGATATTGCTCATCAAG
AAGACCAAGGTGCCTATCATCGCCATCTGCAACGACCGACAGCACCCAAA
AATAAGGCAGGTGCTGTCCTTCTCAAAAGAAGGCACTAGTGGCGGCGGTA
GCAGCGGGTGCGGGGGGCTGAGGAAACAGCTGGTGATCATGGACGAGGTG
GATGGGATGGGCGGCTCGGACCGCGGGGGCATCCATGAGCTGATATTGCT
CATCAAGAAGACCAAGGTGCCTATCATCGCCATCTGCAACGACCGACAGC
ACCCAAAAATAAGG
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