mRNA_H-elongata_contig121943.1678.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121943.1678.1
Unique NamemRNA_H-elongata_contig121943.1678.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121943.1678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121943contigH-elongata_contig121943:365..938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size574
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121943.1678.1prot_H-elongata_contig121943.1678.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121943 546..851 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.8320935-UTR-H-elongata_contig121943:364..5451622929717.8320935-UTR-H-elongata_contig121943:364..545Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121943 365..545 +
1691679130.7145422-UTR-H-elongata_contig121943:364..5451691679130.7145422-UTR-H-elongata_contig121943:364..545Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121943 365..545 +
1622929717.8578885-UTR-H-elongata_contig121943:851..9381622929717.8578885-UTR-H-elongata_contig121943:851..938Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121943 852..938 +
1691679130.7382987-UTR-H-elongata_contig121943:851..9381691679130.7382987-UTR-H-elongata_contig121943:851..938Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121943 852..938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.8427525-CDS-H-elongata_contig121943:545..8511622929717.8427525-CDS-H-elongata_contig121943:545..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121943 546..851 +
1691679130.7268622-CDS-H-elongata_contig121943:545..8511691679130.7268622-CDS-H-elongata_contig121943:545..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121943 546..851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121943.1678.1

>prot_H-elongata_contig121943.1678.1 ID=prot_H-elongata_contig121943.1678.1|Name=mRNA_H-elongata_contig121943.1678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MIVISWVLCRSKRRITQASRALFCLTVAGGTQLSAVGYFTLLAVSFLLFI
SRPVPLELPHLSLRFKSILDFVYYSSRYHLLSSVPHGLGEADKPPRQRYY
H*
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mRNA from alignment at H-elongata_contig121943:365..938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121943.1678.1 ID=mRNA_H-elongata_contig121943.1678.1|Name=mRNA_H-elongata_contig121943.1678.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=574bp|location=Sequence derived from alignment at H-elongata_contig121943:365..938+ (Himanthalia elongata Himel1 dioecious)
TTCACGTGTTGCAGCGAGCGAAAATGCTGCCCCCATCTACGTGCATGTTA
GTTCAAGGTTTTGAATTCATAGTCCCTACGCGTCTCGAATGTACTGCGAT
CTGAGCTTCCTTGCCTTTATCCTTTGCATGGATTCGTGAAGGTGGAAAAA
ATATCTGCTTACCAGTCCCGTTTGTTTCTATATGATCGTCATCTCCTGGG
TATTATGCCGCTCAAAGCGCCGTATTACTCAAGCATCGAGGGCTCTCTTT
TGTTTAACCGTTGCGGGTGGTACACAGCTCTCCGCAGTTGGCTACTTTAC
CCTGCTTGCGGTTTCTTTTCTGCTATTCATCTCGCGGCCAGTGCCACTCG
AACTTCCGCATCTCTCTCTGCGTTTCAAATCCATCCTAGATTTCGTCTAT
TACTCTTCACGGTACCACTTACTCTCCAGCGTCCCGCATGGCCTTGGTGA
AGCTGATAAACCACCTCGACAACGCTACTATCACTGAGTGGTTCGCTTGA
TGCGTCACAATTCGCCGCTGCTACCTCCTTTCGGACGCCACGACGGCCGA
TAGTCAATAGTCGATAGTCATCCG
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Coding sequence (CDS) from alignment at H-elongata_contig121943:365..938+

>mRNA_H-elongata_contig121943.1678.1 ID=mRNA_H-elongata_contig121943.1678.1|Name=mRNA_H-elongata_contig121943.1678.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig121943:365..938+ (Himanthalia elongata Himel1 dioecious)
ATGATCGTCATCTCCTGGGTATTATGCCGCTCAAAGCGCCGTATTACTCA
AGCATCGAGGGCTCTCTTTTGTTTAACCGTTGCGGGTGGTACACAGCTCT
CCGCAGTTGGCTACTTTACCCTGCTTGCGGTTTCTTTTCTGCTATTCATC
TCGCGGCCAGTGCCACTCGAACTTCCGCATCTCTCTCTGCGTTTCAAATC
CATCCTAGATTTCGTCTATTACTCTTCACGGTACCACTTACTCTCCAGCG
TCCCGCATGGCCTTGGTGAAGCTGATAAACCACCTCGACAACGCTACTAT
CACTGAATGATCGTCATCTCCTGGGTATTATGCCGCTCAAAGCGCCGTAT
TACTCAAGCATCGAGGGCTCTCTTTTGTTTAACCGTTGCGGGTGGTACAC
AGCTCTCCGCAGTTGGCTACTTTACCCTGCTTGCGGTTTCTTTTCTGCTA
TTCATCTCGCGGCCAGTGCCACTCGAACTTCCGCATCTCTCTCTGCGTTT
CAAATCCATCCTAGATTTCGTCTATTACTCTTCACGGTACCACTTACTCT
CCAGCGTCCCGCATGGCCTTGGTGAAGCTGATAAACCACCTCGACAACGC
TACTATCACTGA
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