mRNA_H-elongata_contig121921.1677.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121921.1677.1
Unique NamemRNA_H-elongata_contig121921.1677.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121921.1677.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 103 bits (256), Expect = 4.100e-24
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 LLAVFPPCLGQLSNNDIADQQTQPLLSGSVCRVRDTLDFLDPKERAKVTFKRRVDIAKRELAVGPTC 201
            LLA FPPCL Q + N++AD QT+PLLSGSVCRVRDT+DFL P +RAK+TFKRR+ IA  ELAVGPTC
Sbjct:   12 LLAAFPPCLSQ-TVNELADMQTRPLLSGSVCRVRDTVDFLSPTKRAKITFKRRIGIAAGELAVGPTC 77
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BLAST of mRNA_H-elongata_contig121921.1677.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.370e-20
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 LLAVFPPCLGQLSNNDIADQQTQPLLSGSVCRVRDTLDFLDPKERAKVTFKRRVDIAKRELAVGPTC 201
            LLA  PPCLG  SN +   Q T PLLSGSVCRVRD+LDFL P ERAKVT ++RVD AK E  VGPTC
Sbjct:   10 LLAASPPCLGATSNEE--HQPTHPLLSGSVCRVRDSLDFLSPTERAKVTLQKRVDTAKEEFQVGPTC 74
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BLAST of mRNA_H-elongata_contig121921.1677.1 vs. uniprot
Match: A0A3G3BM34_SACJA (Vanadium-dependent bromine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM34_SACJA)

HSP 1 Score: 88.6 bits (218), Expect = 5.770e-19
Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 LLAVFPPCLGQLSNNDIADQQTQPLLSGSVCRVRDTLDFLDPKERAKVTFKRRVDIAKRELAVGPTC 201
            LLA FPPCLG     D   + TQPLLSGSVCRVRD+LDFLDP  RAKVT  +R+ IAK E +VGPTC
Sbjct:   47 LLAAFPPCLGY----DEPAEPTQPLLSGSVCRVRDSLDFLDPVPRAKVTLLKRLAIAKDEFSVGPTC 109
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BLAST of mRNA_H-elongata_contig121921.1677.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.430e-17
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 LLAVFPPCLGQLSNNDIADQQTQPLLSGSVCRVRDTLDFLDPKERAKVTFKRRVDIAKRELAVGPTC 201
            LLA FPPC     ++++  + T PLLSGSVCRVRD+LDFLDP +RA VT ++R+ IAK E  VGPTC
Sbjct:   10 LLAAFPPCFAAGDHDEV--RATLPLLSGSVCRVRDSLDFLDPVQRATVTLEKRLAIAKNEFGVGPTC 74
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BLAST of mRNA_H-elongata_contig121921.1677.1 vs. uniprot
Match: Q7X9V0_9PHAE (Vanadium-dependent bromoperoxidase 2 n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7X9V0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.430e-17
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 LLAVFPPCLGQLSNNDIADQQTQPLLSGSVCRVRDTLDFLDPKERAKVTFKRRVDIAKRELAVGPTC 201
            LLA F PCLG     +   + TQPLLSG+VCRVRD+LDFLDP  RAKVT  +R+ IAK E++VGPTC
Sbjct:   47 LLAAFAPCLGY----EEPPEPTQPLLSGNVCRVRDSLDFLDPVPRAKVTLLKRLAIAKDEISVGPTC 109
[Close]
BLAST of mRNA_H-elongata_contig121921.1677.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 73.2 bits (178), Expect = 1.510e-13
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 LLAVFPPCLGQLSNNDIADQQTQPLLSGSVCRVRDTLDFLDPKERAKVTFKRRVDIAKRELAVGPTC 201
            LLA FPPCLG   +N+   Q  +   SG VC VRD+LDFLDP +RA+VT   R+ IA+ E  VGPTC
Sbjct:   51 LLAAFPPCLGAGDSNET--QANKSPASGDVCNVRDSLDFLDPVQRAEVTRANRLAIAEDEFKVGPTC 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121921.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO4.100e-2473.13Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
D8LTP5_ECTSI1.370e-2068.66Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
A0A3G3BM34_SACJA5.770e-1967.16Vanadium-dependent bromine peroxidase n=1 Tax=Sacc... [more]
B7ZGM1_9PHAE2.430e-1759.70Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
Q7X9V0_9PHAE2.430e-1762.69Vanadium-dependent bromoperoxidase 2 n=2 Tax=Lamin... [more]
A0A411NJW8_SACJA1.510e-1355.22Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121921contigH-elongata_contig121921:59..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue6.5e-17
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.7821236-CDS-H-elongata_contig121921:60..1381622929717.7821236-CDS-H-elongata_contig121921:60..138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121921 61..138 -
1691679130.688213-CDS-H-elongata_contig121921:60..1381691679130.688213-CDS-H-elongata_contig121921:60..138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121921 61..138 -
1622929717.7929091-CDS-H-elongata_contig121921:1072..11951622929717.7929091-CDS-H-elongata_contig121921:1072..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121921 1073..1195 -
1691679130.7014034-CDS-H-elongata_contig121921:1072..11951691679130.7014034-CDS-H-elongata_contig121921:1072..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121921 1073..1195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121921.1677.1prot_H-elongata_contig121921.1677.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121921 61..1195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121921.1677.1

>prot_H-elongata_contig121921.1677.1 ID=prot_H-elongata_contig121921.1677.1|Name=mRNA_H-elongata_contig121921.1677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
LLAVFPPCLGQLSNNDIADQQTQPLLSGSVCRVRDTLDFLDPKERAKVTF
KRRVDIAKRELAVGPTC
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mRNA from alignment at H-elongata_contig121921:59..1195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121921.1677.1 ID=mRNA_H-elongata_contig121921.1677.1|Name=mRNA_H-elongata_contig121921.1677.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1137bp|location=Sequence derived from alignment at H-elongata_contig121921:59..1195- (Himanthalia elongata Himel1 dioecious)
CTGCTAGCGGTATTTCCACCCTGTCTGGGCCAGCTCTCCAACAACGACAT
TGCAGACCAGCAGACACAACCGCTTTTAAGTGGTAGCGTGTGCCGAGTCA
GAGACACCCTTGACTTCCTCGACGTGAGCACCAAGTCTGACTGAAATGCC
CGTCATTGATACCTTACATGCTGCAAAACTAAGTACTTCATGCACTGTAG
CTTCCCCCCCACCCTTACACCACACTGCTTAATATGGCATAGGTATAGAC
CACCACGGAGGACCTTTAACCGCACGATCCCTCCTTCGGATTGCGATCGC
TGCTATTTAGGTGGTGAAGGCGATATATTTTTGGTCAATATTTTTGTTAG
GTGTCAGGACTACCGGTAACTCCAGCTCGTGTGGTGGTACACCTAAACAT
TTAAAGCTAATCCAACGATACGGGGGGAGATTAGTCACACGTCCCCAATT
CACGGAGAGAAAAGATAGATTCAACCTGTTCCGGTGACCGTACATAAGAA
TCTCCGGTTCTATGGCGATCACCCTCCCCTCTCCAAACCGGGGACAATTA
AGTGATCCCCCCTCGTCTCTGCATTGGGTTTCCATTACGAACATGTAATG
GCGTAAGGCAAACAATAGATGCAGAGCAAGTAACGAAGTCCCGAACGAAC
AATCATTAGAGCGTACTTGAGGATCACTTCGATCTTCTTCTATGGTAGTT
TCTTTACAAAGGAAACTGTTCTAAGGGCTTAAGCAATGACGTGTGGATCC
AAGAGCTTGCCACATTTCACATTCTCCATATATTTTCAGATAATGCGCTC
TTTAGCTGAATAGAGATTGGGCTTGCACAAGGGCAGTAAGCAAAGCGAAA
CGTATTCTCCCTGTGTGTGTTGTCCGGAATTGTCCGAATAAATATTGTGC
CGCCGAACCACGGTGTGACAATTTTACTTGTACCCCTTCTACGTTTAGCG
AGAGCCATTGACTTCATTTCCCCATGGCAAAGATAACAAAGCCATAATAA
TCATCACACCATCAACAACACCACCACCCGCCGTATCATTACCACCGTAA
CATATAGCCTAAGGAGCGTGCTAAGGTCACCTTCAAGAGGCGCGTTGATA
TCGCCAAGAGGGAGCTCGCCGTCGGGCCGACCTGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig121921:59..1195-

>mRNA_H-elongata_contig121921.1677.1 ID=mRNA_H-elongata_contig121921.1677.1|Name=mRNA_H-elongata_contig121921.1677.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig121921:59..1195- (Himanthalia elongata Himel1 dioecious)
CTGCTAGCGGTATTTCCACCCTGTCTGGGCCAGCTCTCCAACAACGACAT
TGCAGACCAGCAGACACAACCGCTTTTAAGTGGTAGCGTGTGCCGAGTCA
GAGACACCCTTGACTTCCTCGACCTGCTAGCGGTATTTCCACCCTGTCTG
GGCCAGCTCTCCAACAACGACATTGCAGACCAGCAGACACAACCGCTTTT
AAGTGGTAGCGTGTGCCGAGTCAGAGACACCCTTGACTTCCTCGACCCTA
AGGAGCGTGCTAAGGTCACCTTCAAGAGGCGCGTTGATATCGCCAAGAGG
GAGCTCGCCGTCGGGCCGACCTGCCCTAAGGAGCGTGCTAAGGTCACCTT
CAAGAGGCGCGTTGATATCGCCAAGAGGGAGCTCGCCGTCGGGCCGACCT
GC
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