mRNA_H-elongata_contig121862.1673.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: D7FPG7_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG7_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 1.970e-18 Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 1 MSHRKVRAMIPRAGFLTLIVMLVMTSSVI-AFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEAHE 246
M+ +++R M P+A F + + + S AFKDPHN FCG+D+CY +LGL RGA+K +IKKAYR IS +VHPDKN + A E
Sbjct: 1 MARKRMRVMSPQAIFFVVAIAVAAFSGFAEAFKDPHNKFCGEDECYAVLGLQRGADKADIKKAYRTISLDVHPDKNPTAAAKE 83
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A835YSJ5_9STRA (Heat shock protein 40 like protein/ DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ5_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 4.680e-11 Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 52 LIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKN 225
L+++L+ ++ KDPH +FCGKD+CY++L + R A K EI+++YR +S E HPDKN
Sbjct: 9 LLLVLLGFAAAAKIKDPHGIFCGKDNCYEVLAVPRNATKDEIRRSYRALSLENHPDKN 66
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A7S1TDL4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDL4_9RHOD) HSP 1 Score: 62.8 bits (151), Expect = 8.860e-10 Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 94 KDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEAHE 246
+DP FCGKDDC+ LLGL+R A E+K +YR +S ++HPD+N++ +A E
Sbjct: 5 RDPTEFFCGKDDCFSLLGLNRSATLAEVKSSYRRLSLQLHPDRNKADDAEE 55
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A7S3VYZ7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VYZ7_9SPIT) HSP 1 Score: 59.7 bits (143), Expect = 1.000e-9 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 88 AFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEA 240
A + +++CGKDDCY LL +DR A TEIKKAYR+++ + HPDKN +A
Sbjct: 2 AAQGASDLYCGKDDCYSLLDVDRAATSTEIKKAYRKLALKWHPDKNRGAKA 52
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A4D9D8H7_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8H7_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.200e-9 Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 10 RKVRAMIPRAGFLTLIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESP 234
R A R+ L ++++ + + + KD HN+FCGK++CY LLG+ + AE I++A+R++S HPDK SP
Sbjct: 5 RNYHAAFGRSRLLVAMILVSLFQGLQSLKDYHNIFCGKENCYDLLGVPQEAESPAIRRAFRQLSLVHHPDKGGSP 79
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: UPI0006B07742 (dnaJ homolog subfamily C member 25 homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B07742) HSP 1 Score: 61.2 bits (147), Expect = 3.930e-9 Identity = 24/68 (35.29%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 37 AGFLTLIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEA 240
+ T+I++L+M ++ F + ++CGK++CY +LG+ R + K++I +AYR ++++ HPD + S EA
Sbjct: 12 SNIFTIILVLIMVQAIHGFMELEGLYCGKENCYDVLGVPRESSKSDIARAYRRLARKYHPDMHRSTEA 79
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A5J4Z9U7_PORPP (Chaperone protein dnaJ 50 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9U7_PORPP) HSP 1 Score: 59.3 bits (142), Expect = 1.740e-8 Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 40 GFLTLIVMLVMTSSVIAFKDPHNVFCGKD-DCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEAHE 246
G +++V++ + + V + + +FCGK +CY+LLG++RGAE +IK+AYR++S E+HPDKN +A E
Sbjct: 19 GIASVLVVIGLCAQVAS---AYEIFCGKKANCYELLGVERGAELRDIKRAYRKLSLELHPDKNPREDAAE 85
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: UPI001BB18367 (dnaJ homolog subfamily C member 25 homolog isoform X1 n=3 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB18367) HSP 1 Score: 57.8 bits (138), Expect = 6.610e-8 Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 1
Query: 25 MIPRAGFLTLIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEAHE 246
M P +G + LI + V A D ++CGK++CY +LG+ + AEK+EI K YR+++++ HPDKN+ A E
Sbjct: 1 MAPYSGIVILISVFVTFHCCDAMID--GLYCGKENCYDVLGVSKDAEKSEIAKNYRQLARKYHPDKNKDAGAEE 72
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: UPI00103DEA57 (dnaJ homolog subfamily C member 25 homolog n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103DEA57) HSP 1 Score: 57.4 bits (137), Expect = 9.140e-8 Identity = 25/65 (38.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 52 LIVMLVMTSSVIAFKDP--HNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEA 240
++V ++ +++++ D ++CGK +CY++LGL R A K+EI K YR+++K+ HPD + PEA
Sbjct: 8 ILVAVIWQATIVSSHDHLLEGIYCGKQNCYEVLGLTREATKSEIGKTYRQLAKKFHPDLHRDPEA 72
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: T0SAV8_SAPDV (J domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SAV8_SAPDV) HSP 1 Score: 56.6 bits (135), Expect = 1.650e-7 Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 82 VIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEA 240
V+A N++CG+ +CY LLGL+R A TE++K YR +S +HPDKN S +A
Sbjct: 9 VLAVVHGRNMYCGQRECYDLLGLERTASATEVRKQYRALSLLMHPDKNPSADA 61 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig121862.1673.1 >prot_H-elongata_contig121862.1673.1 ID=prot_H-elongata_contig121862.1673.1|Name=mRNA_H-elongata_contig121862.1673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp MSHRKVRAMIPRAGFLTLIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLback to top mRNA from alignment at H-elongata_contig121862:341..586+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig121862.1673.1 ID=mRNA_H-elongata_contig121862.1673.1|Name=mRNA_H-elongata_contig121862.1673.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig121862:341..586+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig121862:341..586+ >mRNA_H-elongata_contig121862.1673.1 ID=mRNA_H-elongata_contig121862.1673.1|Name=mRNA_H-elongata_contig121862.1673.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig121862:341..586+ (Himanthalia elongata Himel1 dioecious)back to top |