mRNA_H-elongata_contig121856.1672.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121856.1672.1
Unique NamemRNA_H-elongata_contig121856.1672.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: A0A6H5K128_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K128_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 5.320e-41
Identity = 77/97 (79.38%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 QEGVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPWQ 291
            Q G+SS GFA LAAAVF S+GFRV+ +      TVATPLVAFGVSH  ACAGVMVTASHNPK DNGYKVYWGNGSQIIPP DAGIAASI RNLEPWQ
Sbjct:  194 QGGLSSAGFANLAAAVFISRGFRVFLMD----GTVATPLVAFGVSHTKACAGVMVTASHNPKKDNGYKVYWGNGSQIIPPHDAGIAASIARNLEPWQ 286
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: D7FUQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ5_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 6.400e-41
Identity = 75/97 (77.32%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 QEGVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPWQ 291
            Q G+SS GFA LAA+VF S+GFRV+ +      TVATPLVAFGVS   ACAGVMVTASHNPK DNGYKVYWGNGSQIIPP DAGIAASI RNLEPWQ
Sbjct:  195 QGGLSSAGFANLAASVFISRGFRVFLMD----GTVATPLVAFGVSQTKACAGVMVTASHNPKKDNGYKVYWGNGSQIIPPHDAGIAASIARNLEPWQ 287
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: A0A482SXH0_9ARCH (PGM_PMM_I domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXH0_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 1.260e-32
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   10 VSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPW 288
            +SS GFA +AA VF  QG++VY L     N V TP+V FGV H    AG+MVTASHNPK DNG+KVYWGNG+QIIPP D GIAASI + L PW
Sbjct:   12 LSSLGFARIAAKVFLGQGYKVYLLE----NLVHTPMVPFGVQHFGCAAGMMVTASHNPKADNGFKVYWGNGAQIIPPHDEGIAASIAKCLAPW 100
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: Q6DFA0_XENLA (Pgm2l1-prov protein n=4 Tax=Xenopus TaxID=8353 RepID=Q6DFA0_XENLA)

HSP 1 Score: 123 bits (309), Expect = 7.390e-31
Identity = 59/94 (62.77%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    7 GVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPW 288
            G SS+ FA LAA  F SQG +VY       +   TP V + V+HL  CAG+MVTASHNPK DNGYKVYW NG+QIIPP D+GIA SIE+NLEPW
Sbjct:  112 GGSSKRFARLAATTFVSQGIKVYMFS----DITPTPFVPYAVTHLNLCAGIMVTASHNPKQDNGYKVYWENGAQIIPPHDSGIAQSIEKNLEPW 201
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: A0A7S1C782_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C782_9STRA)

HSP 1 Score: 114 bits (285), Expect = 9.480e-31
Identity = 57/92 (61.96%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:   13 SSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPW 288
            +SE FALL+AA   S+G +VY         VATPLV +GV  + A AG+MVTASHNPK DNGYKVYW NG QIIPP+D GIA +I  NLEPW
Sbjct:   15 ASERFALLSAAAIMSKGIKVYLYN----KLVATPLVPYGVDTVGAAAGIMVTASHNPKADNGYKVYWANGCQIIPPQDEGIADAIMANLEPW 102
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: A0A1Y2HA70_9FUNG (Phosphoglucomutase n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HA70_9FUNG)

HSP 1 Score: 123 bits (308), Expect = 1.130e-30
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    7 GVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPW 288
            G++S  FA L A VF S+G +VYF      N V TP+V FG++HL A  G+M+TASHNPK DNGYK+YWGNGSQI+PP DA IA SIE NLEPW
Sbjct:  105 GLTSARFARLTAGVFLSKGIKVYFYP----NLVHTPMVPFGITHLGASCGIMITASHNPKADNGYKLYWGNGSQIVPPMDAHIAQSIEDNLEPW 194
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: UPI0018796AF0 (LOW QUALITY PROTEIN: phosphoglucomutase-2-like n=1 Tax=Manis javanica TaxID=9974 RepID=UPI0018796AF0)

HSP 1 Score: 122 bits (306), Expect = 1.470e-30
Identity = 59/94 (62.77%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    7 GVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPW 288
            G SS+GFALLAA  F +QG  VY     +G T  TP V + VSHL  CAG+M+TASHNPK DNGYKVYW NG+QII P D GI+ +IE NLEPW
Sbjct:   60 GGSSKGFALLAATTFITQGIPVYLF---SGITPPTPFVPYTVSHLKLCAGIMITASHNPKQDNGYKVYWANGAQIISPHDKGISQAIEENLEPW 150
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: A0A3B1JXH5_ASTMX (Phosphoglucomutase 2 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1JXH5_ASTMX)

HSP 1 Score: 122 bits (305), Expect = 2.610e-30
Identity = 62/94 (65.96%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    7 GVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPW 288
            G SS+ FA LAAA+  S+G  VY     T     TP V F VSHL  CAG+MVTASHNPK DNGYKVYW NG+QIIPP D GIAASIE+NLEPW
Sbjct:  122 GGSSKRFASLAAAILTSRGVPVYLFSVFTP----TPYVPFTVSHLGLCAGIMVTASHNPKQDNGYKVYWENGAQIIPPHDKGIAASIEKNLEPW 211
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: A0A5A9PN48_9TELE (Phosphoglucomutase-2 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PN48_9TELE)

HSP 1 Score: 121 bits (303), Expect = 5.680e-30
Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    7 GVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPW 288
            G SS+ F+ LAAAVF S+G  VY       +   TP V + VSHL  CAGVMVTASHNPK DNGYKVYW NG+QIIPP D GIAA+IE NLEPW
Sbjct:  158 GGSSKRFSSLAAAVFISRGVPVYLFS----DITPTPYVPYTVSHLGLCAGVMVTASHNPKQDNGYKVYWANGAQIIPPHDKGIAAAIEENLEPW 247
[Close]
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Match: A0A8C1KZY1_CYPCA (Phosphoglucomutase 2 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1KZY1_CYPCA)

HSP 1 Score: 120 bits (302), Expect = 7.250e-30
Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    7 GVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTACAGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPW 288
            G SS+ FA LAA+V  S+G  VY       +   TP V F VSHL  CAGVMVTASHNPK DNGYKVYW NG+QIIPP D GIAA+IE+NLEPW
Sbjct:  147 GGSSKRFACLAASVLISRGVPVYLFS----DITPTPYVPFTVSHLGLCAGVMVTASHNPKQDNGYKVYWANGAQIIPPHDKGIAAAIEQNLEPW 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121856.1672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K128_9PHAE5.320e-4179.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUQ5_ECTSI6.400e-4177.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482SXH0_9ARCH1.260e-3263.44PGM_PMM_I domain-containing protein n=1 Tax=archae... [more]
Q6DFA0_XENLA7.390e-3162.77Pgm2l1-prov protein n=4 Tax=Xenopus TaxID=8353 Rep... [more]
A0A7S1C782_9STRA9.480e-3161.96Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1Y2HA70_9FUNG1.130e-3062.77Phosphoglucomutase n=1 Tax=Catenaria anguillulae P... [more]
UPI0018796AF01.470e-3062.77LOW QUALITY PROTEIN: phosphoglucomutase-2-like n=1... [more]
A0A3B1JXH5_ASTMX2.610e-3065.96Phosphoglucomutase 2 n=1 Tax=Astyanax mexicanus Ta... [more]
A0A5A9PN48_9TELE5.680e-3064.89Phosphoglucomutase-2 n=1 Tax=Triplophysa tibetana ... [more]
A0A8C1KZY1_CYPCA7.250e-3064.89Phosphoglucomutase 2 n=1 Tax=Cyprinus carpio TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121856contigH-elongata_contig121856:370..660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.1e-33
Seed eggNOG ortholog2880.D7FUQ5
Preferred nameGPM2
KEGG rclassRC00408
KEGG koko:K01835,ko:K15779
KEGG ReactionR00959,R01057,R02749,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
GOsGO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006139,GO:0006148,GO:0006152,GO:0006166,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008617,GO:0008973,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019318,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042451,GO:0042454,GO:0042455,GO:0043094,GO:0043101,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046102,GO:0046115,GO:0046128,GO:0046129,GO:0046130,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
EggNOG free text desc.alginic acid metabolic process
EggNOG OGsCOG1109@1,KOG1220@2759
EC5.4.2.2,5.4.2.7
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha-D-phosphohexomutase, alpha/beta/alpha domain II
Ec32 orthologEc-19_004310.1
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.501662-CDS-H-elongata_contig121856:369..6601622929717.501662-CDS-H-elongata_contig121856:369..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121856 370..660 +
1691679130.5803902-CDS-H-elongata_contig121856:369..6601691679130.5803902-CDS-H-elongata_contig121856:369..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121856 370..660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121856.1672.1prot_H-elongata_contig121856.1672.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121856 370..660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121856.1672.1

>prot_H-elongata_contig121856.1672.1 ID=prot_H-elongata_contig121856.1672.1|Name=mRNA_H-elongata_contig121856.1672.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
QEGVSSEGFALLAAAVFASQGFRVYFLGCATGNTVATPLVAFGVSHLTAC
AGVMVTASHNPKMDNGYKVYWGNGSQIIPPRDAGIAASIERNLEPWQ
back to top

mRNA from alignment at H-elongata_contig121856:370..660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121856.1672.1 ID=mRNA_H-elongata_contig121856.1672.1|Name=mRNA_H-elongata_contig121856.1672.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig121856:370..660+ (Himanthalia elongata Himel1 dioecious)
CAGGAAGGCGTTTCCTCGGAGGGGTTCGCCCTGCTCGCGGCCGCGGTTTT
TGCGTCTCAGGGGTTCCGCGTGTATTTCCTGGGCTGCGCTACTGGCAACA
CCGTGGCCACGCCGCTCGTGGCATTCGGAGTTTCCCATCTAACGGCGTGC
GCTGGCGTCATGGTGACGGCGTCCCACAACCCGAAAATGGACAACGGCTA
CAAGGTGTACTGGGGGAATGGGAGCCAGATCATCCCGCCGCGCGACGCCG
GGATTGCCGCCAGCATCGAGCGGAACCTGGAGCCCTGGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig121856:370..660+

>mRNA_H-elongata_contig121856.1672.1 ID=mRNA_H-elongata_contig121856.1672.1|Name=mRNA_H-elongata_contig121856.1672.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig121856:370..660+ (Himanthalia elongata Himel1 dioecious)
CAGGAAGGCGTTTCCTCGGAGGGGTTCGCCCTGCTCGCGGCCGCGGTTTT
TGCGTCTCAGGGGTTCCGCGTGTATTTCCTGGGCTGCGCTACTGGCAACA
CCGTGGCCACGCCGCTCGTGGCATTCGGAGTTTCCCATCTAACGGCGTGC
GCTGGCGTCATGGTGACGGCGTCCCACAACCCGAAAATGGACAACGGCTA
CAAGGTGTACTGGGGGAATGGGAGCCAGATCATCCCGCCGCGCGACGCCG
GGATTGCCGCCAGCATCGAGCGGAACCTGGAGCCCTGGCAGCAGGAAGGC
GTTTCCTCGGAGGGGTTCGCCCTGCTCGCGGCCGCGGTTTTTGCGTCTCA
GGGGTTCCGCGTGTATTTCCTGGGCTGCGCTACTGGCAACACCGTGGCCA
CGCCGCTCGTGGCATTCGGAGTTTCCCATCTAACGGCGTGCGCTGGCGTC
ATGGTGACGGCGTCCCACAACCCGAAAATGGACAACGGCTACAAGGTGTA
CTGGGGGAATGGGAGCCAGATCATCCCGCCGCGCGACGCCGGGATTGCCG
CCAGCATCGAGCGGAACCTGGAGCCCTGGCAG
back to top